MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 97226 bp
Accession: NZ_CP086923 Location: 1..97226 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-32 Replicon: plasmid P4
Accession: NZ_CP086923 Location: 1..97226 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-32 Replicon: plasmid P4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE17_RS21130 (LOE17_21100) | 1..399 | - | 399 | Protein_0 | SMC-Scp complex subunit ScpB | - |
| LOE17_RS21135 (LOE17_21105) | 447..1311 | - | 865 | Protein_1 | DUF1403 family protein | - |
| LOE17_RS21140 (LOE17_21110) | 1470..2564 | + | 1095 | WP_224556253.1 | tyrosine-type recombinase/integrase | - |
| LOE17_RS21145 (LOE17_21115) | 2668..6006 | - | 3339 | WP_224556255.1 | DEAD/DEAH box helicase | - |
| LOE17_RS21150 (LOE17_21120) | 6211..7098 | + | 888 | WP_114273238.1 | Tn3 family transposase ISPsy42 | Transposase |
| LOE17_RS21155 (LOE17_21125) | 7540..8742 | + | 1203 | WP_089852475.1 | Sporulation initiation inhibitor protein Soj | VF |
| LOE17_RS21160 (LOE17_21130) | 8732..9691 | + | 960 | WP_121066477.1 | plasmid partitioning protein RepB | - |
| LOE17_RS21165 (LOE17_21135) | 9931..11088 | + | 1158 | WP_121066480.1 | helix-turn-helix domain-containing protein | - |
| LOE17_RS21170 (LOE17_21140) | 11154..12197 | + | 1044 | WP_114276417.1 | IS5 family transposase ISPmar3 | Transposase |
| LOE17_RS21175 (LOE17_21145) | 12488..14665 | + | 2178 | WP_224556256.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE17_RS21180 (LOE17_21150) | 14765..15238 | + | 474 | WP_114276003.1 | hypothetical protein | - |
| LOE17_RS21185 (LOE17_21155) | 15622..15786 | + | 165 | WP_007803240.1 | hypothetical protein | - |
| LOE17_RS21190 (LOE17_21160) | 16025..17470 | + | 1446 | WP_114276004.1 | hypothetical protein | - |
| LOE17_RS21195 (LOE17_21165) | 17480..17767 | - | 288 | WP_009827212.1 | H-NS histone family protein | - |
| LOE17_RS21200 (LOE17_21170) | 18187..18591 | + | 405 | WP_009827211.1 | single-stranded DNA-binding protein | - |
| LOE17_RS21205 (LOE17_21175) | 18646..19242 | - | 597 | WP_037954955.1 | hypothetical protein | - |
| LOE17_RS21210 (LOE17_21180) | 19282..20187 | + | 906 | WP_114276002.1 | hypothetical protein | - |
| LOE17_RS21215 (LOE17_21185) | 20325..21524 | + | 1200 | WP_121066443.1 | DUF932 domain-containing protein | - |
| LOE17_RS21220 (LOE17_21190) | 21652..22092 | + | 441 | WP_114276349.1 | DNA repair protein RadC | - |
| LOE17_RS21225 (LOE17_21195) | 22202..22720 | + | 519 | WP_114276373.1 | DNA repair protein RadC | - |
| LOE17_RS21230 (LOE17_21200) | 22824..23315 | + | 492 | WP_067297141.1 | hypothetical protein | - |
| LOE17_RS21235 (LOE17_21205) | 23326..23703 | + | 378 | WP_114276348.1 | hypothetical protein | - |
| LOE17_RS21240 (LOE17_21210) | 23705..23902 | + | 198 | WP_047998245.1 | hypothetical protein | - |
| LOE17_RS21245 (LOE17_21215) | 23978..24397 | + | 420 | WP_067297244.1 | hypothetical protein | - |
| LOE17_RS21250 (LOE17_21220) | 24390..25034 | + | 645 | WP_121066445.1 | antitoxin of toxin-antitoxin stability system | - |
| LOE17_RS21255 (LOE17_21225) | 25093..25494 | + | 402 | WP_067297291.1 | MbcA/ParS/Xre antitoxin family protein | - |
| LOE17_RS21260 (LOE17_21230) | 25491..26192 | + | 702 | WP_067297288.1 | RES family NAD+ phosphorylase | - |
| LOE17_RS21265 (LOE17_21235) | 26715..27008 | - | 294 | WP_067297285.1 | hypothetical protein | - |
| LOE17_RS21270 (LOE17_21240) | 27185..27565 | + | 381 | Protein_28 | hypothetical protein | - |
| LOE17_RS21275 (LOE17_21245) | 27667..28776 | + | 1110 | WP_224558030.1 | IS110 family transposase ISEc45 | Transposase |
| LOE17_RS21280 (LOE17_21250) | 29002..31671 | + | 2670 | WP_229939218.1 | strawberry notch family protein | - |
| LOE17_RS21285 (LOE17_21255) | 31648..32094 | - | 447 | Protein_31 | IS6 family transposase | - |
| LOE17_RS21290 (LOE17_21260) | 32164..32754 | + | 591 | WP_052418560.1 | LysR substrate-binding domain-containing protein | - |
| LOE17_RS21295 (LOE17_21265) | 32785..33705 | + | 921 | WP_043755133.1 | HTH-type transcriptional regulator GltC | VF |
| LOE17_RS21300 (LOE17_21270) | 33854..34852 | + | 999 | WP_052418559.1 | TRAP transporter substrate-binding protein DctP | - |
| LOE17_RS21305 (LOE17_21275) | 34918..35463 | + | 546 | WP_081979733.1 | TRAP transporter small permease | - |
| LOE17_RS21310 (LOE17_21280) | 35463..36743 | + | 1281 | WP_052418558.1 | TRAP transporter large permease | - |
| LOE17_RS21315 (LOE17_21285) | 36733..38076 | + | 1344 | WP_224557915.1 | MmgE/PrpD family protein | - |
| LOE17_RS21320 (LOE17_21290) | 38073..38567 | + | 495 | WP_043755128.1 | MaoC family dehydratase | - |
| LOE17_RS21325 (LOE17_21295) | 38564..39799 | + | 1236 | WP_043755124.1 | acyl-CoA dehydrogenase family protein | - |
| LOE17_RS21330 (LOE17_21300) | 39810..40295 | + | 486 | WP_043755138.1 | MaoC family dehydratase | - |
| LOE17_RS21335 (LOE17_21305) | 40292..41521 | + | 1230 | WP_043755120.1 | CoA transferase | - |
| LOE17_RS21340 (LOE17_21310) | 41531..42448 | + | 918 | WP_043755117.1 | CoA ester lyase | - |
| LOE17_RS21350 (LOE17_21320) | 43338..43969 | - | 632 | Protein_44 | IS3 family transposase ISPko4 | Transposase |
| LOE17_RS21355 (LOE17_21325) | 44030..44449 | + | 420 | WP_229940658.1 | hypothetical protein | - |
| LOE17_RS21360 (LOE17_21330) | 44650..45369 | - | 720 | WP_224557875.1 | hypothetical protein | - |
| LOE17_RS21365 (LOE17_21335) | 45526..46386 | + | 861 | WP_224557876.1 | LysR family transcriptional regulator | - |
| LOE17_RS21370 (LOE17_21340) | 46741..47760 | - | 1020 | WP_224557877.1 | IS110 family transposase ISAzs4 | Transposase |
| LOE17_RS21375 (LOE17_21345) | 47886..48311 | + | 426 | WP_224557878.1 | hypothetical protein | - |
| LOE17_RS21380 (LOE17_21350) | 48386..49351 | - | 966 | WP_224557879.1 | Transcriptional regulatory protein AfsQ1 | VF |
| LOE17_RS21385 (LOE17_21355) | 49348..50685 | - | 1338 | WP_224557880.1 | HAMP domain-containing sensor histidine kinase | - |
| LOE17_RS21390 (LOE17_21360) | 50682..51164 | - | 483 | WP_224557881.1 | molybdopterin-dependent oxidoreductase | - |
| LOE17_RS21395 (LOE17_21365) | 51301..51852 | + | 552 | WP_224557882.1 | hypothetical protein | - |
| LOE17_RS21400 (LOE17_21370) | 51854..52426 | + | 573 | WP_224557883.1 | hypothetical protein | - |
| LOE17_RS21405 (LOE17_21375) | 52435..52914 | + | 480 | WP_224557884.1 | hypothetical protein | - |
| LOE17_RS21410 (LOE17_21380) | 52911..53438 | + | 528 | WP_224557885.1 | hypothetical protein | - |
| LOE17_RS21415 (LOE17_21385) | 53435..53959 | + | 525 | WP_224557886.1 | hypothetical protein | - |
| LOE17_RS21420 (LOE17_21390) | 53983..54954 | + | 972 | WP_224557888.1 | hypothetical protein | - |
| LOE17_RS21425 (LOE17_21395) | 54951..57251 | + | 2301 | WP_224557889.1 | VWA domain-containing protein | - |
| LOE17_RS21430 (LOE17_21400) | 57290..57784 | + | 495 | WP_224557890.1 | hypothetical protein | - |
| LOE17_RS21435 (LOE17_21405) | 57781..57993 | + | 213 | WP_224557891.1 | hypothetical protein | - |
| LOE17_RS21440 (LOE17_21410) | 57996..58920 | - | 925 | Protein_62 | IS5 family transposase ISUnCu15 | Transposase |
| LOE17_RS21445 (LOE17_21415) | 59240..60268 | - | 1029 | WP_224557892.1 | IS110 family transposase ISPko7 | Transposase |
| LOE17_RS21450 (LOE17_21420) | 60552..62780 | - | 2229 | WP_224557893.1 | glycosyltransferase | - |
| LOE17_RS21455 (LOE17_21425) | 62777..63802 | - | 1026 | WP_229942672.1 | lysylphosphatidylglycerol synthase transmembrane domain-containing protein | - |
| LOE17_RS21460 (LOE17_21430) | 64312..65674 | + | 1363 | WP_229939207.1 | IS3 family transposase ISPko4 | Transposase |
| LOE17_RS21465 (LOE17_21435) | 65777..66577 | + | 801 | WP_284145095.1 | zinc-binding dehydrogenase | - |
| LOE17_RS21470 (LOE17_21440) | 66596..67126 | - | 531 | WP_224557955.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| LOE17_RS21475 (LOE17_21445) | 67190..70657 | + | 3468 | WP_224557954.1 | indolepyruvate ferredoxin oxidoreductase family protein | - |
| LOE17_RS21480 (LOE17_21450) | 70756..71766 | + | 1011 | WP_224557953.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| LOE17_RS21485 (LOE17_21455) | 72149..73308 | + | 1160 | WP_224557952.1 | IS3 family transposase ISOba2 | Transposase |
| LOE17_RS21490 (LOE17_21460) | 73332..73529 | - | 198 | WP_224557951.1 | hypothetical protein | - |
| LOE17_RS21495 (LOE17_21465) | 73584..74969 | - | 1386 | WP_224558008.1 | ISKra4 family transposase ISUnCu7 | Transposase |
| LOE17_RS21500 (LOE17_21470) | 74996..75577 | - | 582 | WP_224558009.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| LOE17_RS21505 (LOE17_21475) | 75696..76358 | - | 663 | WP_224558010.1 | plasmid pRiA4b ORF-3 family protein | - |
| LOE17_RS21510 (LOE17_21480) | 76419..76745 | - | 327 | Protein_76 | DEAD/DEAH box helicase family protein | - |
| LOE17_RS21515 (LOE17_21485) | 76921..78375 | - | 1455 | WP_229941945.1 | ATP-binding protein | - |
| LOE17_RS21520 (LOE17_21490) | 78555..79613 | - | 1059 | WP_224557922.1 | HEPN domain-containing protein | - |
| LOE17_RS21525 (LOE17_21495) | 79610..82360 | - | 2751 | WP_224557923.1 | lactate dehydrogenase | - |
| LOE17_RS21530 (LOE17_21500) | 82357..82779 | - | 423 | WP_224557924.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LOE17_RS21535 (LOE17_21505) | 82783..83031 | - | 249 | WP_229939240.1 | plasmid stabilization protein | Antitoxin Detail |
| LOE17_RS21540 (LOE17_21510) | 83179..84168 | - | 990 | WP_224557926.1 | Type IV secretion system protein VirB11 | VF |
| LOE17_RS21545 (LOE17_21515) | 84279..85736 | - | 1458 | WP_224557927.1 | Type IV secretion system protein PtlG | VF |
| LOE17_RS21550 (LOE17_21520) | 85739..86470 | - | 732 | WP_224557928.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LOE17_RS21555 (LOE17_21525) | 86474..87118 | - | 645 | WP_224557929.1 | Type IV secretion system protein PtlE | VF |
| LOE17_RS21560 (LOE17_21530) | 87121..88122 | - | 1002 | WP_224557930.1 | type IV secretion system protein | - |
| LOE17_RS21565 (LOE17_21535) | 88122..88610 | - | 489 | WP_229939238.1 | hypothetical protein | - |
| LOE17_RS21570 (LOE17_21540) | 88614..89423 | - | 810 | WP_224557967.1 | type IV secretion system protein | - |
| LOE17_RS21575 (LOE17_21545) | 89413..90501 | - | 1089 | WP_224557968.1 | lytic transglycosylase domain-containing protein | - |
| LOE17_RS21580 (LOE17_21550) | 90667..92925 | - | 2259 | WP_229940657.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LOE17_RS21585 (LOE17_21555) | 93026..93301 | - | 276 | WP_009819926.1 | VirB3 family type IV secretion system protein | - |
| LOE17_RS21590 (LOE17_21560) | 93325..93609 | - | 285 | WP_224557971.1 | hypothetical protein | VF |
| LOE17_RS21595 (LOE17_21565) | 93606..94187 | - | 582 | WP_224557975.1 | lytic transglycosylase domain-containing protein | - |
| LOE17_RS21600 (LOE17_21570) | 94776..95045 | + | 270 | WP_111550073.1 | hypothetical protein | - |
| LOE17_RS21605 (LOE17_21575) | 95131..95784 | + | 654 | WP_121066465.1 | hypothetical protein | - |
| LOE17_RS21610 (LOE17_21580) | 96005..97162 | + | 1158 | WP_121066468.1 | replication initiation protein RepC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|