MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 85251 bp
Accession: NZ_CP086889 Location: 1..85251 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-67 Replicon: plasmid P3
Accession: NZ_CP086889 Location: 1..85251 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-67 Replicon: plasmid P3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE21_RS20385 (LOE21_20380) | 170..3508 | - | 3339 | WP_224556255.1 | DEAD/DEAH box helicase | - |
| LOE21_RS20390 (LOE21_20385) | 3713..4600 | + | 888 | WP_114273238.1 | Tn3 family transposase ISPsy42 | Transposase |
| LOE21_RS20395 (LOE21_20390) | 5042..6244 | + | 1203 | WP_089852475.1 | Sporulation initiation inhibitor protein Soj | VF |
| LOE21_RS20400 (LOE21_20395) | 6234..7193 | + | 960 | WP_121066477.1 | plasmid partitioning protein RepB | - |
| LOE21_RS20405 (LOE21_20400) | 7433..8590 | + | 1158 | WP_121066480.1 | helix-turn-helix domain-containing protein | - |
| LOE21_RS20410 (LOE21_20405) | 8656..9699 | + | 1044 | WP_114276417.1 | IS5 family transposase ISPmar3 | Transposase |
| LOE21_RS20415 (LOE21_20410) | 9990..12167 | + | 2178 | WP_224556256.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE21_RS20420 (LOE21_20415) | 12267..12740 | + | 474 | WP_114276003.1 | hypothetical protein | - |
| LOE21_RS20425 (LOE21_20420) | 13124..13288 | + | 165 | WP_007803240.1 | hypothetical protein | - |
| LOE21_RS20430 (LOE21_20425) | 13527..14972 | + | 1446 | WP_114276004.1 | hypothetical protein | - |
| LOE21_RS20435 (LOE21_20430) | 14982..15269 | - | 288 | WP_009827212.1 | H-NS histone family protein | - |
| LOE21_RS20440 (LOE21_20435) | 15689..16093 | + | 405 | WP_009827211.1 | single-stranded DNA-binding protein | - |
| LOE21_RS20445 (LOE21_20440) | 16148..16744 | - | 597 | WP_037954955.1 | hypothetical protein | - |
| LOE21_RS20450 (LOE21_20445) | 16784..17689 | + | 906 | WP_114276002.1 | hypothetical protein | - |
| LOE21_RS20455 (LOE21_20450) | 17827..19026 | + | 1200 | WP_121066443.1 | DUF932 domain-containing protein | - |
| LOE21_RS20460 (LOE21_20455) | 19154..19594 | + | 441 | WP_114276349.1 | DNA repair protein RadC | - |
| LOE21_RS20465 (LOE21_20460) | 19704..20222 | + | 519 | WP_114276373.1 | DNA repair protein RadC | - |
| LOE21_RS20470 (LOE21_20465) | 20326..20817 | + | 492 | WP_067297141.1 | hypothetical protein | - |
| LOE21_RS20475 (LOE21_20470) | 20828..21205 | + | 378 | WP_114276348.1 | hypothetical protein | - |
| LOE21_RS20480 (LOE21_20475) | 21207..21404 | + | 198 | WP_047998245.1 | hypothetical protein | - |
| LOE21_RS20485 (LOE21_20480) | 21480..21899 | + | 420 | WP_067297244.1 | hypothetical protein | - |
| LOE21_RS20490 (LOE21_20485) | 21892..22536 | + | 645 | WP_121066445.1 | antitoxin of toxin-antitoxin stability system | - |
| LOE21_RS20495 (LOE21_20490) | 22595..22996 | + | 402 | WP_067297291.1 | MbcA/ParS/Xre antitoxin family protein | - |
| LOE21_RS20500 (LOE21_20495) | 22993..23694 | + | 702 | WP_067297288.1 | RES family NAD+ phosphorylase | - |
| LOE21_RS20505 (LOE21_20500) | 24217..24510 | - | 294 | WP_067297285.1 | hypothetical protein | - |
| LOE21_RS20510 (LOE21_20505) | 24687..25067 | + | 381 | Protein_25 | hypothetical protein | - |
| LOE21_RS20515 (LOE21_20510) | 25169..26278 | + | 1110 | WP_224558030.1 | IS110 family transposase ISEc45 | Transposase |
| LOE21_RS20520 (LOE21_20515) | 26504..29173 | + | 2670 | WP_229939218.1 | strawberry notch family protein | - |
| LOE21_RS20525 (LOE21_20520) | 29150..29596 | - | 447 | Protein_28 | IS6 family transposase | - |
| LOE21_RS20530 (LOE21_20525) | 29666..30256 | + | 591 | WP_052418560.1 | LysR substrate-binding domain-containing protein | - |
| LOE21_RS20535 (LOE21_20530) | 30287..31207 | + | 921 | WP_043755133.1 | HTH-type transcriptional regulator GltC | VF |
| LOE21_RS20540 (LOE21_20535) | 31356..32354 | + | 999 | WP_052418559.1 | TRAP transporter substrate-binding protein DctP | - |
| LOE21_RS20545 (LOE21_20540) | 32420..32965 | + | 546 | WP_081979733.1 | TRAP transporter small permease | - |
| LOE21_RS20550 (LOE21_20545) | 32965..34245 | + | 1281 | WP_052418558.1 | TRAP transporter large permease | - |
| LOE21_RS20555 (LOE21_20550) | 34235..35578 | + | 1344 | WP_224557915.1 | MmgE/PrpD family protein | - |
| LOE21_RS20560 (LOE21_20555) | 35575..36069 | + | 495 | WP_043755128.1 | MaoC family dehydratase | - |
| LOE21_RS20565 (LOE21_20560) | 36066..37301 | + | 1236 | WP_043755124.1 | acyl-CoA dehydrogenase family protein | - |
| LOE21_RS20570 (LOE21_20565) | 37312..37797 | + | 486 | WP_043755138.1 | MaoC family dehydratase | - |
| LOE21_RS20575 (LOE21_20570) | 37794..39023 | + | 1230 | WP_043755120.1 | CoA transferase | - |
| LOE21_RS20580 (LOE21_20575) | 39033..39950 | + | 918 | WP_043755117.1 | CoA ester lyase | - |
| LOE21_RS20590 (LOE21_20585) | 40840..41471 | - | 632 | Protein_41 | IS3 family transposase ISPko4 | Transposase |
| LOE21_RS20595 (LOE21_20590) | 41601..41951 | + | 351 | WP_229939210.1 | hypothetical protein | - |
| LOE21_RS20600 (LOE21_20595) | 42152..42871 | - | 720 | WP_224557875.1 | hypothetical protein | - |
| LOE21_RS20605 (LOE21_20600) | 43028..43888 | + | 861 | WP_224557876.1 | LysR family transcriptional regulator | - |
| LOE21_RS20610 (LOE21_20605) | 44243..45262 | - | 1020 | WP_224557877.1 | IS110 family transposase ISAzs4 | Transposase |
| LOE21_RS20615 (LOE21_20610) | 45388..45813 | + | 426 | WP_224557878.1 | hypothetical protein | - |
| LOE21_RS20620 (LOE21_20615) | 45888..46853 | - | 966 | WP_224557879.1 | Transcriptional regulatory protein AfsQ1 | VF |
| LOE21_RS20625 (LOE21_20620) | 46850..48187 | - | 1338 | WP_224557880.1 | HAMP domain-containing sensor histidine kinase | - |
| LOE21_RS20630 (LOE21_20625) | 48184..48666 | - | 483 | WP_224557881.1 | molybdopterin-dependent oxidoreductase | - |
| LOE21_RS20635 (LOE21_20630) | 48803..49354 | + | 552 | WP_224557882.1 | hypothetical protein | - |
| LOE21_RS20640 (LOE21_20635) | 49356..49928 | + | 573 | WP_224557883.1 | hypothetical protein | - |
| LOE21_RS20645 (LOE21_20640) | 49937..50416 | + | 480 | WP_224557884.1 | hypothetical protein | - |
| LOE21_RS20650 (LOE21_20645) | 50413..50940 | + | 528 | WP_224557885.1 | hypothetical protein | - |
| LOE21_RS20655 (LOE21_20650) | 50937..51461 | + | 525 | WP_224557886.1 | hypothetical protein | - |
| LOE21_RS20660 (LOE21_20655) | 51485..52456 | + | 972 | WP_224557888.1 | hypothetical protein | - |
| LOE21_RS20665 (LOE21_20660) | 52453..54753 | + | 2301 | WP_224557889.1 | VWA domain-containing protein | - |
| LOE21_RS20670 (LOE21_20665) | 54750..55286 | + | 537 | WP_229940780.1 | hypothetical protein | - |
| LOE21_RS20675 (LOE21_20675) | 55498..56422 | - | 925 | Protein_58 | IS5 family transposase ISUnCu15 | Transposase |
| LOE21_RS20680 (LOE21_20680) | 56742..57770 | - | 1029 | WP_224557892.1 | IS110 family transposase ISPko7 | Transposase |
| LOE21_RS20685 (LOE21_20685) | 58054..60282 | - | 2229 | WP_224557893.1 | glycosyltransferase | - |
| LOE21_RS20690 (LOE21_20690) | 60279..61343 | - | 1065 | WP_224557894.1 | lysylphosphatidylglycerol synthase transmembrane domain-containing protein | - |
| LOE21_RS20695 (LOE21_20695) | 61814..63176 | + | 1363 | WP_229939207.1 | IS3 family transposase ISPko4 | Transposase |
| LOE21_RS20700 (LOE21_20700) | 63294..64079 | + | 786 | WP_229939180.1 | zinc-binding dehydrogenase | - |
| LOE21_RS20705 (LOE21_20705) | 64098..64502 | - | 405 | WP_229939178.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| LOE21_RS20710 (LOE21_20710) | 64692..68159 | + | 3468 | WP_224557954.1 | indolepyruvate ferredoxin oxidoreductase family protein | - |
| LOE21_RS20715 (LOE21_20715) | 68258..69268 | + | 1011 | WP_224557953.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| LOE21_RS20720 (LOE21_20720) | 69651..70810 | + | 1160 | WP_224557952.1 | IS3 family transposase ISOba2 | Transposase |
| LOE21_RS20725 (LOE21_20725) | 70834..71031 | - | 198 | WP_224557951.1 | hypothetical protein | - |
| LOE21_RS20730 (LOE21_20730) | 71086..72471 | - | 1386 | WP_224558008.1 | ISKra4 family transposase ISUnCu7 | Transposase |
| LOE21_RS20735 (LOE21_20735) | 72498..73079 | - | 582 | WP_224558009.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| LOE21_RS20740 (LOE21_20740) | 73198..73860 | - | 663 | WP_224558010.1 | plasmid pRiA4b ORF-3 family protein | - |
| LOE21_RS20745 (LOE21_20745) | 73921..74247 | - | 327 | Protein_72 | DEAD/DEAH box helicase family protein | - |
| LOE21_RS20750 (LOE21_20750) | 74423..75895 | - | 1473 | WP_224557920.1 | ATP-binding protein | - |
| LOE21_RS20755 (LOE21_20755) | 76057..77115 | - | 1059 | WP_224557922.1 | HEPN domain-containing protein | - |
| LOE21_RS20760 (LOE21_20760) | 77112..79862 | - | 2751 | WP_224557923.1 | lactate dehydrogenase | - |
| LOE21_RS20765 (LOE21_20765) | 79859..80281 | - | 423 | WP_224557924.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LOE21_RS20770 (LOE21_20770) | 80285..80533 | - | 249 | WP_229939240.1 | plasmid stabilization protein | Antitoxin Detail |
| LOE21_RS20775 (LOE21_20775) | 80681..81670 | - | 990 | WP_224557926.1 | Type IV secretion system protein VirB11 | VF |
| LOE21_RS20780 (LOE21_20780) | 81781..83238 | - | 1458 | WP_224557927.1 | Type IV secretion system protein PtlG | VF |
| LOE21_RS20785 (LOE21_20785) | 83241..83972 | - | 732 | WP_224557928.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LOE21_RS20790 (LOE21_20790) | 83976..84620 | - | 645 | WP_224557929.1 | Type IV secretion system protein PtlE | VF |
| LOE21_RS20795 (LOE21_20795) | 84623..85174 | - | 552 | WP_229940781.1 | type IV secretion system protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|