MGE detailed information
MGE type: Prophage MGE length: 62237 bp
Accession: NZ_CP086678 Location: 4438760..4500996 Organism: Escherichia coli strain EFF60 Replicon: chromosome
Accession: NZ_CP086678 Location: 4438760..4500996 Organism: Escherichia coli strain EFF60 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMF34_RS21230 (4434659) | 4434659..4435879 | + | 1221 | WP_021523109.1 | DNA-binding transcriptional repressor Mlc | - |
| LMF34_RS21235 (4436004) | 4436004..4436699 | + | 696 | WP_248422688.1 | dethiobiotin synthase | - |
| LMF34_RS21240 (4436652) | 4436652..4437944 | - | 1293 | WP_071593650.1 | voltage-gated ClC-type chloride channel ClcB | - |
| LMF34_RS21245 (4438103) | 4438103..4438717 | - | 615 | WP_001520571.1 | Tat proofreading chaperone DmsD | - |
| LMF34_RS21250 (4438760) | 4438760..4439614 | - | 855 | WP_020233477.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| LMF34_RS21255 (4439616) | 4439616..4440233 | - | 618 | WP_001520568.1 | dimethylsulfoxide reductase subunit B | - |
| LMF34_RS21260 (4440244) | 4440244..4442667 | - | 2424 | WP_248422693.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LMF34_RS21265 (4442728) | 4442728..4445154 | - | 2427 | WP_001551145.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LMF34_RS21270 (4445353) | 4445353..4445658 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| LMF34_RS21275 (4445766) | 4445766..4446476 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| LMF34_RS21280 (4446479) | 4446479..4447039 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| LMF34_RS21285 (4447074) | 4447074..4447415 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| LMF34_RS21290 (4447550) | 4447550..4447876 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| LMF34_RS21295 (4448082) | 4448082..4449296 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LMF34_RS21300 (4449308) | 4449308..4450327 | + | 1020 | WP_000836037.1 | Zn-dependent oxidoreductase | - |
| LMF34_RS21305 (4450515) | 4450515..4451794 | - | 1280 | Protein_4155 | Putative defective protein IntQ ; Integrase | Integrase |
| LMF34_RS21310 (4451829) | 4451829..4452080 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| LMF34_RS21315 (4452153) | 4452153..4454624 | - | 2472 | WP_248422689.1 | exonuclease | - |
| LMF34_RS21320 (4454717) | 4454717..4454908 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LMF34_RS21325 (4454905) | 4454905..4455093 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LMF34_RS21330 (4455661) | 4455661..4455879 | - | 219 | WP_001171942.1 | protein YdfC | - |
| LMF34_RS26920 (4455909) | 4455909..4456037 | - | 129 | WP_000344964.1 | protein YdfB | - |
| LMF34_RS21335 (4456039) | 4456039..4456194 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LMF34_RS21340 (4456361) | 4456361..4456768 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LMF34_RS21345 (4456852) | 4456852..4457082 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LMF34_RS21350 (4457066) | 4457066..4457587 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| LMF34_RS21355 (4457568) | 4457568..4458533 | + | 966 | WP_248422690.1 | hypothetical protein | - |
| LMF34_RS21360 (4458574) | 4458574..4458996 | + | 423 | WP_248422691.1 | DUF977 family protein | - |
| LMF34_RS21365 (4458993) | 4458993..4459196 | + | 204 | Protein_4168 | class I SAM-dependent methyltransferase | - |
| LMF34_RS21370 (4459347) | 4459347..4460327 | - | 981 | WP_000019402.1 | IS5 family transposase IS5D | Transposase |
| LMF34_RS21375 (4460399) | 4460399..4460681 | + | 283 | Protein_4170 | SAM-dependent methyltransferase | - |
| LMF34_RS21380 (4461159) | 4461159..4461580 | + | 422 | Protein_4171 | hypothetical protein | - |
| LMF34_RS21385 (4462235) | 4462235..4463257 | + | 1023 | Protein_4172 | ISNCY family transposase ISCARN112 | Transposase |
| LMF34_RS21390 (4463378) | 4463378..4463527 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| LMF34_RS21395 (4463964) | 4463964..4464296 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LMF34_RS21400 (4464499) | 4464499..4464804 | - | 306 | WP_001326990.1 | protein YdfV | - |
| LMF34_RS21405 (4464829) | 4464829..4465068 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LMF34_RS21410 (4465068) | 4465068..4465355 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LMF34_RS21415 (4465427) | 4465427..4465582 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LMF34_RS21420 (4465799) | 4465799..4466050 | + | 252 | WP_000980994.1 | protein Rem | - |
| LMF34_RS21425 (4466117) | 4466117..4466395 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| LMF34_RS21430 (4466397) | 4466397..4467446 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| LMF34_RS21435 (4467460) | 4467460..4468212 | + | 753 | WP_001047135.1 | antitermination protein | - |
| LMF34_RS21440 (4468490) | 4468490..4468579 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| LMF34_RS21445 (4468634) | 4468634..4468846 | - | 213 | WP_248422963.1 | cold shock-like protein CspF | - |
| LMF34_RS21450 (4469147) | 4469147..4469362 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LMF34_RS21455 (4469726) | 4469726..4469896 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LMF34_RS21460 (4470116) | 4470116..4470331 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LMF34_RS21465 (4470336) | 4470336..4470647 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| LMF34_RS21470 (4470644) | 4470644..4471177 | + | 534 | WP_001092971.1 | lysozyme | - |
| LMF34_RS21475 (4471174) | 4471174..4471671 | + | 498 | WP_147706730.1 | DUF2514 domain-containing protein | - |
| LMF34_RS21480 (4472034) | 4472034..4472246 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LMF34_RS21485 (4472257) | 4472257..4472445 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LMF34_RS21490 (4472448) | 4472448..4472513 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| LMF34_RS21495 (4472518) | 4472518..4472748 | + | 231 | WP_276573047.1 | protein YnfN | - |
| LMF34_RS21500 (4472915) | 4472915..4473088 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LMF34_RS21505 (4473240) | 4473240..4473650 | - | 411 | WP_001571459.1 | DUF1398 domain-containing protein | - |
| LMF34_RS21510 (4473708) | 4473708..4473941 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LMF34_RS21515 (4474330) | 4474330..4474875 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| LMF34_RS21520 (4474850) | 4474850..4476775 | + | 1926 | WP_249469292.1 | phage terminase large subunit family protein | - |
| LMF34_RS21525 (4476772) | 4476772..4476978 | + | 207 | WP_000198149.1 | gpW family protein | - |
| LMF34_RS21530 (4476975) | 4476975..4478576 | + | 1602 | WP_129965702.1 | phage portal protein | - |
| LMF34_RS21535 (4478557) | 4478557..4479888 | + | 1332 | WP_147706876.1 | S49 family peptidase | - |
| LMF34_RS21540 (4479898) | 4479898..4480230 | + | 333 | WP_000201478.1 | head decoration protein | - |
| LMF34_RS21545 (4480286) | 4480286..4481311 | + | 1026 | WP_000118192.1 | major capsid protein | - |
| LMF34_RS21550 (4481353) | 4481353..4481748 | + | 396 | WP_001586767.1 | DNA-packaging protein FI | - |
| LMF34_RS21555 (4481760) | 4481760..4482113 | + | 354 | WP_000752966.1 | head-tail joining protein | - |
| LMF34_RS21560 (4482125) | 4482125..4482703 | + | 579 | WP_001595432.1 | phage tail protein | - |
| LMF34_RS21565 (4482700) | 4482700..4483095 | + | 396 | WP_097093988.1 | phage minor tail U family protein | - |
| LMF34_RS21570 (4483103) | 4483103..4483843 | + | 741 | WP_001306179.1 | phage tail protein | - |
| LMF34_RS21575 (4483859) | 4483859..4484281 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| LMF34_RS21580 (4484263) | 4484263..4484697 | + | 435 | WP_000459481.1 | phage tail assembly protein T | - |
| LMF34_RS21585 (4484690) | 4484690..4487251 | + | 2562 | WP_248422981.1 | phage tail tape measure protein | - |
| LMF34_RS21590 (4487248) | 4487248..4487577 | + | 330 | WP_248422980.1 | phage tail protein | - |
| LMF34_RS21595 (4487577) | 4487577..4488275 | + | 699 | WP_001152525.1 | phage minor tail protein L | - |
| LMF34_RS21600 (4488280) | 4488280..4489023 | + | 744 | WP_032156900.1 | C40 family peptidase | - |
| LMF34_RS21605 (4489020) | 4489020..4489592 | + | 573 | WP_248422983.1 | tail assembly protein | - |
| LMF34_RS21610 (4489653) | 4489653..4493132 | + | 3480 | WP_249469294.1 | host specificity protein J | - |
| LMF34_RS21615 (4493200) | 4493200..4493799 | + | 600 | WP_175096856.1 | Outer membrane protein X | VF |
| LMF34_RS21620 (4493864) | 4493864..4496263 | + | 2400 | WP_249469296.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LMF34_RS21625 (4496260) | 4496260..4496541 | + | 282 | WP_000654154.1 | hypothetical protein | - |
| LMF34_RS21630 (4496551) | 4496551..4497255 | + | 705 | Protein_4221 | tail fiber domain-containing protein | - |
| LMF34_RS21635 (4497266) | 4497266..4497559 | + | 294 | WP_000355609.1 | hypothetical protein | - |
| LMF34_RS21640 (4497579) | 4497579..4497689 | + | 111 | Protein_4223 | tail fiber assembly protein | - |
| LMF34_RS21645 (4497787) | 4497787..4498377 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LMF34_RS21650 (4498694) | 4498694..4498927 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LMF34_RS21655 (4498996) | 4498996..4499109 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LMF34_RS21660 (4499713) | 4499713..4500996 | + | 1284 | Protein_4227 | MHS family MFS transporter YdfJ | - |
| LMF34_RS21665 (4501085) | 4501085..4502545 | + | 1461 | WP_000527786.1 | mannitol dehydrogenase family protein | - |
| LMF34_RS21670 (4502581) | 4502581..4502784 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LMF34_RS21675 (4502962) | 4502962..4503648 | - | 687 | WP_000215553.1 | DNA-binding transcriptional regulator rspR | - |
| LMF34_RS21680 (4503737) | 4503737..4504483 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|