MGE detailed information
MGE type: Prophage MGE length: 43401 bp
Accession: NZ_CP086678 Location: 1642514..1685914 Organism: Escherichia coli strain EFF60 Replicon: chromosome
Accession: NZ_CP086678 Location: 1642514..1685914 Organism: Escherichia coli strain EFF60 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMF34_RS07845 (1638365) | 1638365..1639780 | - | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| LMF34_RS07850 (1639863) | 1639863..1640846 | + | 984 | WP_000235495.1 | quinone oxidoreductase | - |
| LMF34_RS07855 (1641012) | 1641012..1641254 | - | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| LMF34_RS07860 (1641388) | 1641388..1642425 | - | 1038 | WP_001528313.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| LMF34_RS07865 (1642514) | 1642514..1643611 | + | 1098 | WP_000332274.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LMF34_RS07870 (1643673) | 1643673..1643921 | + | 249 | WP_001217553.1 | DinI-like family protein | - |
| LMF34_RS26880 (1643918) | 1643918..1643998 | - | 81 | Protein_1540 | capsid protein | - |
| LMF34_RS07875 (1644039) | 1644039..1644326 | - | 288 | WP_021568063.1 | hypothetical protein | - |
| LMF34_RS07880 (1644370) | 1644370..1645410 | - | 1041 | WP_108188763.1 | tail fiber domain-containing protein | - |
| LMF34_RS07885 (1645423) | 1645423..1645692 | - | 270 | WP_001544317.1 | hypothetical protein | - |
| LMF34_RS07890 (1645692) | 1645692..1648049 | - | 2358 | WP_248422721.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LMF34_RS07895 (1648114) | 1648114..1648713 | - | 600 | WP_021533784.1 | Outer membrane protein X | VF |
| LMF34_RS07900 (1648781) | 1648781..1652260 | - | 3480 | WP_249469324.1 | host specificity protein J | - |
| LMF34_RS07905 (1652327) | 1652327..1652665 | - | 339 | WP_001332187.1 | hypothetical protein | - |
| LMF34_RS07910 (1652738) | 1652738..1653340 | - | 603 | WP_064680940.1 | tail assembly protein | - |
| LMF34_RS07915 (1653277) | 1653277..1654020 | - | 744 | WP_248422973.1 | C40 family peptidase | - |
| LMF34_RS07920 (1654026) | 1654026..1654724 | - | 699 | WP_089477221.1 | phage minor tail protein L | - |
| LMF34_RS07925 (1654724) | 1654724..1655053 | - | 330 | WP_042004415.1 | phage tail protein | - |
| LMF34_RS07930 (1655050) | 1655050..1657629 | - | 2580 | WP_248422974.1 | phage tail tape measure protein | - |
| LMF34_RS07935 (1657622) | 1657622..1658056 | - | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| LMF34_RS07940 (1658038) | 1658038..1658460 | - | 423 | WP_029594073.1 | phage minor tail protein G | - |
| LMF34_RS07945 (1658476) | 1658476..1659216 | - | 741 | WP_097762128.1 | phage tail protein | - |
| LMF34_RS07950 (1659224) | 1659224..1659619 | - | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| LMF34_RS07955 (1659616) | 1659616..1660194 | - | 579 | WP_000975070.1 | phage tail protein | - |
| LMF34_RS07960 (1660206) | 1660206..1660559 | - | 354 | WP_000752979.1 | head-tail joining protein | - |
| LMF34_RS07965 (1660571) | 1660571..1660969 | - | 399 | WP_094319161.1 | DNA-packaging protein FI | - |
| LMF34_RS07970 (1661011) | 1661011..1662036 | - | 1026 | WP_000063252.1 | major capsid protein | - |
| LMF34_RS07975 (1662092) | 1662092..1662424 | - | 333 | WP_001299443.1 | head decoration protein | - |
| LMF34_RS07980 (1662434) | 1662434..1663753 | - | 1320 | WP_249469326.1 | S49 family peptidase | - |
| LMF34_RS07985 (1663734) | 1663734..1665335 | - | 1602 | WP_001534239.1 | phage portal protein | - |
| LMF34_RS07990 (1665332) | 1665332..1665538 | - | 207 | WP_000193669.1 | gpW family protein | - |
| LMF34_RS07995 (1665535) | 1665535..1667460 | - | 1926 | WP_249469328.1 | phage terminase large subunit family protein | - |
| LMF34_RS08000 (1667435) | 1667435..1667980 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| LMF34_RS08005 (1668437) | 1668437..1668973 | - | 537 | WP_248422991.1 | KilA-N domain-containing protein | - |
| LMF34_RS08010 (1669175) | 1669175..1669612 | - | 438 | WP_163406349.1 | lysis protein | - |
| LMF34_RS08015 (1669609) | 1669609..1670085 | - | 477 | WP_096965598.1 | glycoside hydrolase family protein | - |
| LMF34_RS08020 (1670089) | 1670089..1670424 | - | 336 | WP_001120502.1 | phage holin, lambda family | - |
| LMF34_RS08025 (1670501) | 1670501..1671553 | - | 1053 | WP_096965597.1 | site-specific DNA-methyltransferase | - |
| LMF34_RS08030 (1671704) | 1671704..1671907 | - | 204 | WP_063268626.1 | hypothetical protein | - |
| LMF34_RS08035 (1672178) | 1672178..1672624 | + | 447 | WP_089591643.1 | hypothetical protein | - |
| LMF34_RS08040 (1672709) | 1672709..1673074 | - | 366 | WP_001204819.1 | antiterminator Q family protein | - |
| LMF34_RS08045 (1673150) | 1673150..1673847 | + | 698 | WP_103215986.1 | IS1 family transposase IS1R | Transposase |
| LMF34_RS08050 (1673782) | 1673782..1674129 | - | 348 | WP_248440861.1 | hypothetical protein | - |
| LMF34_RS08055 (1674591) | 1674591..1674953 | + | 363 | WP_000135680.1 | protein YfdP | - |
| LMF34_RS08060 (1675019) | 1675019..1675843 | + | 825 | WP_000081287.1 | DUF2303 family protein | - |
| LMF34_RS08065 (1675971) | 1675971..1676507 | + | 537 | WP_000008200.1 | 5'-deoxynucleotidase | - |
| LMF34_RS08070 (1676498) | 1676498..1676623 | + | 126 | Protein_1580 | hypothetical protein | - |
| LMF34_RS08075 (1677010) | 1677010..1677495 | + | 486 | WP_248422889.1 | class I SAM-dependent methyltransferase | - |
| LMF34_RS08080 (1677492) | 1677492..1678091 | + | 600 | WP_248422890.1 | ead/Ea22-like family protein | - |
| LMF34_RS08085 (1678093) | 1678093..1678284 | + | 192 | WP_001014294.1 | hypothetical protein | - |
| LMF34_RS08090 (1678287) | 1678287..1678583 | + | 297 | Protein_1584 | DUF551 domain-containing protein | - |
| LMF34_RS08095 (1678830) | 1678830..1679021 | + | 192 | WP_248422892.1 | DUF551 domain-containing protein | - |
| LMF34_RS08100 (1679021) | 1679021..1679593 | + | 573 | WP_001061350.1 | 3'-5' exonuclease | - |
| LMF34_RS08105 (1679630) | 1679630..1679902 | + | 273 | WP_001093913.1 | pyocin activator PrtN family protein | - |
| LMF34_RS08110 (1679936) | 1679936..1680484 | - | 549 | WP_000019187.1 | hypothetical protein | Toxin Detail |
| LMF34_RS08115 (1680507) | 1680507..1680980 | - | 474 | WP_000287252.1 | DUF4065 domain-containing protein | Antitoxin Detail |
| LMF34_RS08120 (1681285) | 1681285..1681389 | - | 105 | Protein_1590 | tRNA-dihydrouridine synthase | - |
| LMF34_RS08125 (1681752) | 1681752..1682708 | - | 957 | WP_000014226.1 | DUF2713 family protein | - |
| LMF34_RS08130 (1683026) | 1683026..1683541 | + | 516 | WP_000416263.1 | zinc uptake transcriptional repressor Zur | - |
| LMF34_RS08135 (1683583) | 1683583..1683792 | - | 210 | WP_001030593.1 | CsbD family protein | - |
| LMF34_RS08140 (1683908) | 1683908..1685233 | - | 1326 | WP_021523322.1 | MATE family efflux transporter DinF | - |
| LMF34_RS08145 (1685306) | 1685306..1685914 | - | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| LMF34_RS08150 (1686024) | 1686024..1686392 | - | 369 | WP_001522162.1 | diacylglycerol kinase | - |
| LMF34_RS08155 (1686563) | 1686563..1688986 | + | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| LMF34_RS08160 (1689141) | 1689141..1690013 | - | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| LMF34_RS08165 (1690026) | 1690026..1690523 | - | 498 | WP_001305723.1 | chorismate lyase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|