MGE detailed information
MGE type: Prophage MGE length: 88682 bp
Accession: NZ_CP086623 Location: 2346727..2435408 Organism: Escherichia coli strain RIVM_C037794 Replicon: chromosome
Accession: NZ_CP086623 Location: 2346727..2435408 Organism: Escherichia coli strain RIVM_C037794 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN358_RS11415 () | 2343775..2344746 | - | 972 | WP_000564730.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| LN358_RS11420 () | 2344743..2345486 | - | 744 | WP_000019591.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| LN358_RS11425 () | 2345527..2345922 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| LN358_RS11430 () | 2345975..2346745 | - | 771 | WP_042196262.1 | DUF72 domain-containing protein | - |
| LN358_RS11435 () | 2346727..2348040 | - | 1314 | WP_000362005.1 | Putative defective protein IntQ ; Integrase | Integrase |
| LN358_RS11440 () | 2348096..2348332 | - | 237 | WP_000528718.1 | excisionase family protein | - |
| LN358_RS11445 () | 2348341..2348487 | - | 147 | WP_001030156.1 | hypothetical protein | - |
| LN358_RS11450 () | 2348491..2348733 | - | 243 | WP_000457723.1 | DUF4222 domain-containing protein | - |
| LN358_RS11455 () | 2348818..2349162 | - | 345 | WP_021519728.1 | hypothetical protein | - |
| LN358_RS11460 () | 2349159..2349326 | - | 168 | WP_021519727.1 | hypothetical protein | - |
| LN358_RS11465 () | 2349337..2349600 | - | 264 | WP_000224227.1 | hypothetical protein | - |
| LN358_RS11470 () | 2349887..2350012 | - | 126 | Protein_2250 | hypothetical protein | - |
| LN358_RS11475 () | 2350014..2350829 | - | 816 | WP_021519725.1 | ead/Ea22-like family protein | - |
| LN358_RS11480 () | 2350816..2351130 | - | 315 | WP_021519724.1 | hypothetical protein | - |
| LN358_RS11485 () | 2351084..2351401 | - | 318 | WP_000179800.1 | DUF4752 family protein | - |
| LN358_RS11490 () | 2351650..2352231 | - | 582 | WP_001199104.1 | hypothetical protein | - |
| LN358_RS11495 () | 2352237..2352425 | - | 189 | WP_021556324.1 | hypothetical protein | - |
| LN358_RS11500 () | 2352620..2352826 | - | 207 | WP_000141093.1 | hypothetical protein | - |
| LN358_RS11505 () | 2353117..2353617 | - | 501 | WP_021556323.1 | helix-turn-helix domain-containing protein | - |
| LN358_RS11510 () | 2353721..2354377 | - | 657 | WP_000838344.1 | S24 family peptidase | - |
| LN358_RS11515 () | 2354489..2354716 | + | 228 | WP_000177358.1 | hypothetical protein | - |
| LN358_RS11520 () | 2354713..2355420 | + | 708 | WP_001551257.1 | Rha family transcriptional regulator | - |
| LN358_RS11525 () | 2355529..2356383 | + | 855 | WP_001551256.1 | Rha family phage regulatory protein | - |
| LN358_RS11530 () | 2356380..2356574 | + | 195 | WP_000626793.1 | hypothetical protein | - |
| LN358_RS11535 () | 2356571..2356795 | + | 225 | WP_000618007.1 | hypothetical protein | - |
| LN358_RS11540 () | 2356792..2357091 | + | 300 | WP_000995578.1 | hypothetical protein | - |
| LN358_RS11545 () | 2357088..2358074 | + | 987 | WP_032301910.1 | hypothetical protein | - |
| LN358_RS11550 () | 2358085..2358984 | + | 900 | WP_000988266.1 | ATP-binding protein | - |
| LN358_RS11555 () | 2358981..2360381 | + | 1401 | WP_000203849.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| LN358_RS11560 () | 2360378..2360635 | + | 258 | WP_001065354.1 | hypothetical protein | - |
| LN358_RS11565 () | 2360687..2361676 | + | 990 | WP_032283452.1 | DUF968 domain-containing protein | - |
| LN358_RS11570 () | 2361694..2362074 | + | 381 | WP_001204806.1 | antiterminator Q family protein | - |
| LN358_RS11575 () | 2362290..2362487 | + | 198 | WP_000917767.1 | hypothetical protein | - |
| LN358_RS11580 () | 2362639..2363688 | + | 1050 | WP_000024332.1 | site-specific DNA-methyltransferase | - |
| LN358_RS11600 () | 2364093..2364242 | - | 150 | Protein_2273 | hypothetical protein | - |
| LN358_RS11605 () | 2364430..2364645 | + | 216 | WP_000839574.1 | class II holin family protein | - |
| LN358_RS11610 () | 2364650..2365000 | + | 351 | WP_192514396.1 | YdfR family protein | - |
| LN358_RS11615 () | 2365064..2365597 | + | 534 | WP_000992100.1 | lysozyme | - |
| LN358_RS11620 () | 2365814..2365999 | + | 186 | WP_001228685.1 | Rz1 family lipoprotein | - |
| LN358_RS11625 () | 2366217..2366483 | + | 267 | WP_001100260.1 | hypothetical protein | - |
| LN358_RS11630 () | 2366489..2367028 | - | 540 | WP_000351660.1 | YfbU family protein | - |
| LN358_RS11635 () | 2367167..2367517 | + | 351 | WP_001514288.1 | HNH endonuclease | - |
| LN358_RS11640 () | 2367665..2368147 | + | 483 | WP_001330091.1 | phage terminase small subunit P27 family | - |
| LN358_RS11645 () | 2368147..2369904 | + | 1758 | WP_001140907.1 | terminase large subunit | - |
| LN358_RS11650 () | 2369901..2370062 | + | 162 | WP_000811487.1 | hypothetical protein | - |
| LN358_RS11655 () | 2370052..2371278 | + | 1227 | WP_000923132.1 | phage portal protein | - |
| LN358_RS11660 () | 2371271..2371870 | + | 600 | WP_000999828.1 | HK97 family phage prohead protease | - |
| LN358_RS11665 () | 2371885..2373102 | + | 1218 | WP_000766109.1 | phage major capsid protein | - |
| LN358_RS11670 () | 2373179..2373496 | + | 318 | WP_000719066.1 | head-tail connector protein | - |
| LN358_RS11675 () | 2373505..2373843 | + | 339 | WP_001147816.1 | phage head closure protein | - |
| LN358_RS11680 () | 2373840..2374289 | + | 450 | WP_023910305.1 | HK97 gp10 family phage protein | - |
| LN358_RS11685 () | 2374286..2374630 | + | 345 | WP_001206698.1 | DUF3168 domain-containing protein | - |
| LN358_RS11690 () | 2374690..2375394 | + | 705 | WP_000097528.1 | immunoglobulin domain-containing protein | - |
| LN358_RS11695 () | 2375409..2375780 | + | 372 | WP_000164661.1 | phage tail assembly chaperone | - |
| LN358_RS11700 () | 2375792..2376082 | + | 291 | WP_001211636.1 | DUF4035 domain-containing protein | - |
| LN358_RS11705 () | 2376129..2379368 | + | 3240 | WP_000224011.1 | phage tail tape measure protein | - |
| LN358_RS11710 () | 2379361..2379702 | + | 342 | WP_001115183.1 | phage tail protein | - |
| LN358_RS11715 () | 2379702..2380400 | + | 699 | WP_001152453.1 | phage minor tail protein L | - |
| LN358_RS11720 () | 2380405..2381148 | + | 744 | WP_000194743.1 | C40 family peptidase | - |
| LN358_RS11725 () | 2381046..2381693 | + | 648 | WP_021516997.1 | tail assembly protein | - |
| LN358_RS11730 () | 2381754..2385233 | + | 3480 | WP_192514654.1 | host specificity protein J | - |
| LN358_RS11735 () | 2385301..2385900 | + | 600 | WP_192514398.1 | Outer membrane protein X | VF |
| LN358_RS11740 () | 2385965..2388031 | + | 2067 | WP_171887052.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LN358_RS11745 () | 2388028..2388306 | + | 279 | WP_001204581.1 | hypothetical protein | - |
| LN358_RS11750 () | 2388316..2388609 | + | 294 | WP_001555069.1 | hypothetical protein | - |
| LN358_RS11755 () | 2388638..2388751 | + | 114 | Protein_2304 | tail fiber assembly protein | - |
| LN358_RS11760 () | 2388724..2388870 | + | 147 | WP_001420444.1 | hypothetical protein | - |
| LN358_RS11765 () | 2388867..2389115 | - | 249 | WP_001217553.1 | DinI-like family protein | - |
| LN358_RS11770 () | 2389378..2389473 | - | 96 | Protein_2307 | hypothetical protein | - |
| LN358_RS11775 () | 2389470..2390036 | - | 567 | WP_001551241.1 | hydrolase | - |
| LN358_RS11780 () | 2390346..2392118 | + | 1773 | WP_001551240.1 | aspartate--tRNA ligase | - |
| LN358_RS11785 () | 2392236..2392688 | + | 453 | WP_001308712.1 | dihydroneopterin triphosphate diphosphatase | - |
| LN358_RS11790 () | 2392717..2393457 | + | 741 | WP_000907234.1 | putative transcriptional regulatory protein YebC | VF |
| LN358_RS11795 () | 2393492..2394013 | + | 522 | WP_001551239.1 | crossover junction endodeoxyribonuclease RuvC | - |
| LN358_RS11800 () | 2394015..2394617 | - | 603 | WP_001024929.1 | YebB family permuted papain-like enzyme | - |
| LN358_RS11805 () | 2394688..2394753 | + | 66 | WP_010723105.1 | stress response small protein YobI | - |
| LN358_RS11810 () | 2394892..2395503 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| LN358_RS11815 () | 2395512..2396522 | + | 1011 | WP_000568522.1 | Holliday junction branch migration DNA helicase RuvB | - |
| LN358_RS11820 () | 2396672..2397457 | - | 786 | WP_000571479.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| LN358_RS11825 () | 2397454..2398209 | - | 756 | WP_000202996.1 | Zinc import ATP-binding protein ZnuC | VF |
| LN358_RS11830 () | 2398288..2399220 | + | 933 | WP_011076428.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| LN358_RS11835 () | 2399236..2400558 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| LN358_RS11840 () | 2400678..2401649 | + | 972 | WP_001551238.1 | Lipid A biosynthesis myristoyltransferase | VF |
| LN358_RS11845 () | 2401781..2403223 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| LN358_RS11850 () | 2403351..2404220 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| LN358_RS11855 () | 2404558..2406033 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| LN358_RS11860 () | 2406268..2408079 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| LN358_RS11865 () | 2408116..2408757 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LN358_RS11870 () | 2408812..2409990 | - | 1179 | WP_001551236.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LN358_RS11875 () | 2410124..2410414 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| LN358_RS11880 () | 2410481..2410837 | + | 357 | WP_001295500.1 | protein YebF | - |
| LN358_RS11885 () | 2411164..2411823 | + | 660 | WP_000024733.1 | tellurite resistance TerB family protein | - |
| LN358_RS11890 () | 2411987..2413156 | - | 1170 | WP_001551234.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LN358_RS11895 () | 2413213..2413638 | + | 426 | WP_000064873.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LN358_RS11900 () | 2413795..2415855 | + | 2061 | WP_001551233.1 | oligopeptidase B | - |
| LN358_RS11905 () | 2415852..2416514 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LN358_RS11910 () | 2416538..2417194 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LN358_RS11915 () | 2417296..2417526 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LN358_RS11920 () | 2417665..2418039 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LN358_RS11925 () | 2418043..2418915 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LN358_RS11930 () | 2418928..2419269 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2419297..2419568 | - | 272 | - | - | Antitoxin Detail |
| - | 2419427..2419530 | + | 104 | - | - | Toxin Detail |
| LN358_RS11935 () | 2419665..2420321 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LN358_RS11940 () | 2420322..2420513 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LN358_RS11945 () | 2420618..2420854 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LN358_RS11950 () | 2420972..2422411 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LN358_RS11955 () | 2422491..2425124 | - | 2634 | WP_001306757.1 | hypothetical protein | VF |
| LN358_RS11960 () | 2425093..2426376 | - | 1284 | WP_001316436.1 | membrane integrity lipid transport subunit YebS | - |
| LN358_RS11965 () | 2426506..2427003 | + | 498 | WP_001043876.1 | L-methionine (R)-S-oxide reductase | - |
| LN358_RS11970 () | 2427100..2427798 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| LN358_RS11975 () | 2427818..2429866 | + | 2049 | WP_001055785.1 | carboxy terminal-processing peptidase | - |
| LN358_RS11980 () | 2430058..2430939 | + | 882 | WP_000984517.1 | protease HtpX | - |
| LN358_RS11985 () | 2430985..2432358 | - | 1374 | WP_001551227.1 | MFS transporter | - |
| LN358_RS11990 () | 2432535..2433326 | + | 792 | WP_001262179.1 | DNA-binding transcriptional regulator KdgR | - |
| LN358_RS11995 () | 2433470..2433709 | - | 240 | WP_001211011.1 | YobH family protein | - |
| LN358_RS12000 () | 2433868..2434011 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| LN358_RS12005 () | 2434086..2434373 | + | 288 | WP_001006855.1 | YebO family protein | - |
| LN358_RS12010 () | 2435043..2435186 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| LN358_RS12015 () | 2435199..2435408 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LN358_RS12020 () | 2435574..2436383 | + | 810 | WP_000010109.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LN358_RS12025 () | 2436380..2436946 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| LN358_RS12030 () | 2437375..2437833 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| LN358_RS12035 () | 2437888..2438739 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| LN358_RS12040 () | 2438752..2439552 | - | 801 | WP_000406928.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|