Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2419297..2419568 | Replicon | chromosome |
| Accession | NZ_CP086623 | ||
| Organism | Escherichia coli strain RIVM_C037794 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2419427..2419530 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2419297..2419568 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN358_RS11905 | 2415852..2416514 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LN358_RS11910 | 2416538..2417194 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LN358_RS11915 | 2417296..2417526 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LN358_RS11920 | 2417665..2418039 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LN358_RS11925 | 2418043..2418915 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LN358_RS11930 | 2418928..2419269 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2419297..2419568 | - | 272 | - | - | Antitoxin |
| - | 2419427..2419530 | + | 104 | - | - | Toxin |
| LN358_RS11935 | 2419665..2420321 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LN358_RS11940 | 2420322..2420513 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LN358_RS11945 | 2420618..2420854 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LN358_RS11950 | 2420972..2422411 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2346727..2435408 | 88681 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T224151 NZ_CP086623:2419427-2419530 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT224151 NZ_CP086623:c2419568-2419297 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
