MGE detailed information
MGE type: Prophage MGE length: 88682 bp
Accession: NZ_CP086620 Location: 2345882..2434563 Organism: Escherichia coli strain RIVM_C039205 Replicon: chromosome
Accession: NZ_CP086620 Location: 2345882..2434563 Organism: Escherichia coli strain RIVM_C039205 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN351_RS11410 () | 2342930..2343901 | - | 972 | WP_000564730.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| LN351_RS11415 () | 2343898..2344641 | - | 744 | WP_000019591.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| LN351_RS11420 () | 2344682..2345077 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| LN351_RS11425 () | 2345130..2345900 | - | 771 | WP_042196262.1 | DUF72 domain-containing protein | - |
| LN351_RS11430 () | 2345882..2347195 | - | 1314 | WP_000362005.1 | site-specific integrase | - |
| LN351_RS11435 () | 2347251..2347487 | - | 237 | WP_000528718.1 | excisionase family protein | - |
| LN351_RS11440 () | 2347496..2347642 | - | 147 | WP_001030156.1 | hypothetical protein | - |
| LN351_RS11445 () | 2347646..2347888 | - | 243 | WP_000457723.1 | DUF4222 domain-containing protein | - |
| LN351_RS11450 () | 2347973..2348317 | - | 345 | WP_021519728.1 | hypothetical protein | - |
| LN351_RS11455 () | 2348314..2348481 | - | 168 | WP_021519727.1 | hypothetical protein | - |
| LN351_RS11460 () | 2348492..2348755 | - | 264 | WP_000224227.1 | hypothetical protein | - |
| LN351_RS11465 () | 2349042..2349167 | - | 126 | Protein_2249 | hypothetical protein | - |
| LN351_RS11470 () | 2349169..2349984 | - | 816 | WP_021519725.1 | ead/Ea22-like family protein | - |
| LN351_RS11475 () | 2349971..2350285 | - | 315 | WP_021519724.1 | hypothetical protein | - |
| LN351_RS11480 () | 2350239..2350556 | - | 318 | WP_000179800.1 | DUF4752 family protein | - |
| LN351_RS11485 () | 2350805..2351386 | - | 582 | WP_001199104.1 | hypothetical protein | - |
| LN351_RS11490 () | 2351392..2351580 | - | 189 | WP_021556324.1 | hypothetical protein | - |
| LN351_RS11495 () | 2351775..2351981 | - | 207 | WP_000141093.1 | hypothetical protein | - |
| LN351_RS11500 () | 2352272..2352772 | - | 501 | WP_021556323.1 | helix-turn-helix domain-containing protein | - |
| LN351_RS11505 () | 2352876..2353532 | - | 657 | WP_000838344.1 | S24 family peptidase | - |
| LN351_RS11510 () | 2353644..2353871 | + | 228 | WP_000177358.1 | hypothetical protein | - |
| LN351_RS11515 () | 2353868..2354575 | + | 708 | WP_001551257.1 | Rha family transcriptional regulator | - |
| LN351_RS11520 () | 2354684..2355538 | + | 855 | WP_001551256.1 | Rha family phage regulatory protein | - |
| LN351_RS11525 () | 2355535..2355729 | + | 195 | WP_000626793.1 | hypothetical protein | - |
| LN351_RS11530 () | 2355726..2355950 | + | 225 | WP_000618007.1 | hypothetical protein | - |
| LN351_RS11535 () | 2355947..2356246 | + | 300 | WP_000995578.1 | hypothetical protein | - |
| LN351_RS11540 () | 2356243..2357229 | + | 987 | WP_032301910.1 | hypothetical protein | - |
| LN351_RS11545 () | 2357240..2358139 | + | 900 | WP_000988266.1 | ATP-binding protein | - |
| LN351_RS11550 () | 2358136..2359536 | + | 1401 | WP_000203849.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| LN351_RS11555 () | 2359533..2359790 | + | 258 | WP_001065354.1 | hypothetical protein | - |
| LN351_RS11560 () | 2359842..2360831 | + | 990 | WP_032283452.1 | DUF968 domain-containing protein | - |
| LN351_RS11565 () | 2360849..2361229 | + | 381 | WP_001204806.1 | antiterminator Q family protein | - |
| LN351_RS11570 () | 2361445..2361642 | + | 198 | WP_000917767.1 | hypothetical protein | - |
| LN351_RS11575 () | 2361794..2362843 | + | 1050 | WP_000024332.1 | site-specific DNA-methyltransferase | - |
| LN351_RS11595 () | 2363248..2363397 | - | 150 | Protein_2272 | hypothetical protein | - |
| LN351_RS11600 () | 2363585..2363800 | + | 216 | WP_000839574.1 | class II holin family protein | - |
| LN351_RS11605 () | 2363805..2364155 | + | 351 | WP_192514396.1 | YdfR family protein | - |
| LN351_RS11610 () | 2364219..2364752 | + | 534 | WP_000992100.1 | lysozyme | - |
| LN351_RS11615 () | 2364969..2365154 | + | 186 | WP_001228685.1 | Rz1 family lipoprotein | - |
| LN351_RS11620 () | 2365372..2365638 | + | 267 | WP_001100260.1 | hypothetical protein | - |
| LN351_RS11625 () | 2365644..2366183 | - | 540 | WP_000351660.1 | YfbU family protein | - |
| LN351_RS11630 () | 2366322..2366672 | + | 351 | WP_001514288.1 | HNH endonuclease | - |
| LN351_RS11635 () | 2366820..2367302 | + | 483 | WP_001330091.1 | phage terminase small subunit P27 family | - |
| LN351_RS11640 () | 2367302..2369059 | + | 1758 | WP_001140907.1 | terminase large subunit | - |
| LN351_RS11645 () | 2369056..2369217 | + | 162 | WP_000811487.1 | hypothetical protein | - |
| LN351_RS11650 () | 2369207..2370433 | + | 1227 | WP_000923132.1 | phage portal protein | - |
| LN351_RS11655 () | 2370426..2371025 | + | 600 | WP_000999828.1 | HK97 family phage prohead protease | - |
| LN351_RS11660 () | 2371040..2372257 | + | 1218 | WP_000766109.1 | phage major capsid protein | - |
| LN351_RS11665 () | 2372334..2372651 | + | 318 | WP_000719066.1 | head-tail connector protein | - |
| LN351_RS11670 () | 2372660..2372998 | + | 339 | WP_001147816.1 | phage head closure protein | - |
| LN351_RS11675 () | 2372995..2373444 | + | 450 | WP_023910305.1 | HK97 gp10 family phage protein | - |
| LN351_RS11680 () | 2373441..2373785 | + | 345 | WP_001206698.1 | DUF3168 domain-containing protein | - |
| LN351_RS11685 () | 2373845..2374549 | + | 705 | WP_000097528.1 | immunoglobulin domain-containing protein | - |
| LN351_RS11690 () | 2374564..2374935 | + | 372 | WP_000164661.1 | phage tail assembly chaperone | - |
| LN351_RS11695 () | 2374947..2375237 | + | 291 | WP_001211636.1 | DUF4035 domain-containing protein | - |
| LN351_RS11700 () | 2375284..2378523 | + | 3240 | WP_000224011.1 | phage tail tape measure protein | - |
| LN351_RS11705 () | 2378516..2378857 | + | 342 | WP_001115183.1 | phage tail protein | - |
| LN351_RS11710 () | 2378857..2379555 | + | 699 | WP_001152453.1 | phage minor tail protein L | - |
| LN351_RS11715 () | 2379560..2380303 | + | 744 | WP_000194743.1 | C40 family peptidase | - |
| LN351_RS11720 () | 2380201..2380848 | + | 648 | WP_021516997.1 | tail assembly protein | - |
| LN351_RS11725 () | 2380909..2384388 | + | 3480 | WP_192514654.1 | host specificity protein J | - |
| LN351_RS11730 () | 2384456..2385055 | + | 600 | WP_192514398.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| LN351_RS11735 () | 2385120..2387186 | + | 2067 | WP_229315503.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LN351_RS11740 () | 2387183..2387461 | + | 279 | WP_001204581.1 | hypothetical protein | - |
| LN351_RS11745 () | 2387471..2387764 | + | 294 | WP_001555069.1 | hypothetical protein | - |
| LN351_RS11750 () | 2387793..2387906 | + | 114 | Protein_2303 | tail fiber assembly protein | - |
| LN351_RS11755 () | 2387879..2388025 | + | 147 | WP_001420444.1 | hypothetical protein | - |
| LN351_RS11760 () | 2388022..2388270 | - | 249 | WP_001217553.1 | DinI-like family protein | - |
| LN351_RS11765 () | 2388533..2388628 | - | 96 | Protein_2306 | hypothetical protein | - |
| LN351_RS11770 () | 2388625..2389191 | - | 567 | WP_001551241.1 | hydrolase | - |
| LN351_RS11775 () | 2389501..2391273 | + | 1773 | WP_001551240.1 | aspartate--tRNA ligase | - |
| LN351_RS11780 () | 2391391..2391843 | + | 453 | WP_001308712.1 | dihydroneopterin triphosphate diphosphatase | - |
| LN351_RS11785 () | 2391872..2392612 | + | 741 | WP_000907234.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LN351_RS11790 () | 2392647..2393168 | + | 522 | WP_001551239.1 | crossover junction endodeoxyribonuclease RuvC | - |
| LN351_RS11795 () | 2393170..2393772 | - | 603 | WP_001024929.1 | YebB family permuted papain-like enzyme | - |
| LN351_RS11800 () | 2393843..2393908 | + | 66 | WP_010723105.1 | stress response small protein YobI | - |
| LN351_RS11805 () | 2394047..2394658 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| LN351_RS11810 () | 2394667..2395677 | + | 1011 | WP_000568522.1 | Holliday junction branch migration DNA helicase RuvB | - |
| LN351_RS11815 () | 2395827..2396612 | - | 786 | WP_000571479.1 | zinc ABC transporter permease subunit ZnuB | - |
| LN351_RS11820 () | 2396609..2397364 | - | 756 | WP_000202996.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| LN351_RS11825 () | 2397443..2398375 | + | 933 | WP_011076428.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| LN351_RS11830 () | 2398391..2399713 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| LN351_RS11835 () | 2399833..2400804 | + | 972 | WP_001551238.1 | lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase | - |
| LN351_RS11840 () | 2400936..2402378 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| LN351_RS11845 () | 2402506..2403375 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| LN351_RS11850 () | 2403713..2405188 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| LN351_RS11855 () | 2405423..2407234 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| LN351_RS11860 () | 2407271..2407912 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LN351_RS11865 () | 2407967..2409145 | - | 1179 | WP_001551236.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LN351_RS11870 () | 2409279..2409569 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| LN351_RS11875 () | 2409636..2409992 | + | 357 | WP_001295500.1 | protein YebF | - |
| LN351_RS11880 () | 2410319..2410978 | + | 660 | WP_000024733.1 | tellurite resistance TerB family protein | - |
| LN351_RS11885 () | 2411142..2412311 | - | 1170 | WP_001551234.1 | RNA-guided endonuclease TnpB family protein | - |
| LN351_RS11890 () | 2412368..2412793 | + | 426 | WP_000064873.1 | IS200/IS605-like element ISEc46 family transposase | - |
| LN351_RS11895 () | 2412950..2415010 | + | 2061 | WP_001551233.1 | oligopeptidase B | - |
| LN351_RS11900 () | 2415007..2415669 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LN351_RS11905 () | 2415693..2416349 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LN351_RS11910 () | 2416451..2416681 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LN351_RS11915 () | 2416820..2417194 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LN351_RS11920 () | 2417198..2418070 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LN351_RS11925 () | 2418083..2418424 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2418452..2418723 | - | 272 | - | - | Antitoxin Detail |
| - | 2418582..2418685 | + | 104 | - | - | Toxin Detail |
| LN351_RS11930 () | 2418820..2419476 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LN351_RS11935 () | 2419477..2419668 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LN351_RS11940 () | 2419773..2420009 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LN351_RS11945 () | 2420127..2421566 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LN351_RS11950 () | 2421646..2424279 | - | 2634 | WP_001306757.1 | lipid-binding membrane homeostasis protein YebT | - |
| LN351_RS11955 () | 2424248..2425531 | - | 1284 | WP_001316436.1 | membrane integrity lipid transport subunit YebS | - |
| LN351_RS11960 () | 2425661..2426158 | + | 498 | WP_001043876.1 | L-methionine (R)-S-oxide reductase | - |
| LN351_RS11965 () | 2426255..2426953 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| LN351_RS11970 () | 2426973..2429021 | + | 2049 | WP_001055785.1 | carboxy terminal-processing peptidase | - |
| LN351_RS11975 () | 2429213..2430094 | + | 882 | WP_000984517.1 | protease HtpX | - |
| LN351_RS11980 () | 2430140..2431513 | - | 1374 | WP_001551227.1 | MFS transporter | - |
| LN351_RS11985 () | 2431690..2432481 | + | 792 | WP_001262179.1 | DNA-binding transcriptional regulator KdgR | - |
| LN351_RS11990 () | 2432625..2432864 | - | 240 | WP_001211011.1 | YobH family protein | - |
| LN351_RS11995 () | 2433023..2433166 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| LN351_RS12000 () | 2433241..2433528 | + | 288 | WP_001006855.1 | YebO family protein | - |
| LN351_RS12005 () | 2434198..2434341 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| LN351_RS12010 () | 2434354..2434563 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LN351_RS12015 () | 2434729..2435538 | + | 810 | WP_000010109.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LN351_RS12020 () | 2435535..2436101 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| LN351_RS12025 () | 2436530..2436988 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| LN351_RS12030 () | 2437043..2437894 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| LN351_RS12035 () | 2437907..2438707 | - | 801 | WP_000406928.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|