Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2418452..2418723 | Replicon | chromosome |
| Accession | NZ_CP086620 | ||
| Organism | Escherichia coli strain RIVM_C039205 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2418582..2418685 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2418452..2418723 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN351_RS11900 | 2415007..2415669 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LN351_RS11905 | 2415693..2416349 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LN351_RS11910 | 2416451..2416681 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LN351_RS11915 | 2416820..2417194 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LN351_RS11920 | 2417198..2418070 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LN351_RS11925 | 2418083..2418424 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2418452..2418723 | - | 272 | - | - | Antitoxin |
| - | 2418582..2418685 | + | 104 | - | - | Toxin |
| LN351_RS11930 | 2418820..2419476 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LN351_RS11935 | 2419477..2419668 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LN351_RS11940 | 2419773..2420009 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LN351_RS11945 | 2420127..2421566 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2345882..2434563 | 88681 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T224092 NZ_CP086620:2418582-2418685 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT224092 NZ_CP086620:c2418723-2418452 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
