MGE detailed information
MGE type: Conjugative plasmid MGE length: 101785 bp
Accession: NZ_CP086607 Location: 1..101785 Organism: Escherichia fergusonii strain EF20JDJ4045 Replicon: plasmid pEF45-3
Accession: NZ_CP086607 Location: 1..101785 Organism: Escherichia fergusonii strain EF20JDJ4045 Replicon: plasmid pEF45-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN29_RS24015 (1) | 1..858 | + | 858 | WP_000130961.1 | incFII family plasmid replication initiator RepA | - |
| LNN29_RS24020 (1769) | 1769..1906 | + | 138 | Protein_1 | ribbon-helix-helix domain-containing protein | - |
| LNN29_RS24025 (1910) | 1910..2149 | + | 240 | WP_228932009.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LNN29_RS24030 (2344) | 2344..3552 | - | 1209 | WP_000198526.1 | IS91 family transposase ISSbo1 | Transposase |
| LNN29_RS24035 (3533) | 3533..3610 | - | 78 | Protein_4 | hypothetical protein | - |
| LNN29_RS24040 (3593) | 3593..3855 | + | 263 | Protein_5 | conjugal transfer protein TraA | - |
| LNN29_RS24045 (3944) | 3944..4812 | + | 869 | Protein_6 | IS3 family transposase IS2 | Transposase |
| LNN29_RS24050 (4884) | 4884..5539 | + | 656 | Protein_7 | transposase | - |
| LNN29_RS24055 (5541) | 5541..5710 | + | 170 | Protein_8 | IS66 family insertion sequence element accessory protein TnpB | - |
| LNN29_RS24060 (5796) | 5796..6818 | + | 1023 | WP_063100941.1 | IS21 family transposase IS100kyp | Transposase |
| LNN29_RS24065 (6815) | 6815..7596 | + | 782 | Protein_10 | IS21 family transposase IS100 | Transposase |
| LNN29_RS24070 (7657) | 7657..7844 | + | 188 | Protein_11 | IS66 family insertion sequence element accessory protein TnpB | - |
| LNN29_RS24075 (7834) | 7834..8216 | + | 383 | Protein_12 | IS66 family transposase ISCro1 | Transposase |
| LNN29_RS24080 (8863) | 8863..9866 | + | 1004 | Protein_13 | IS110 family transposase ISSfl8 | Transposase |
| LNN29_RS24085 (10315) | 10315..10536 | + | 222 | Protein_14 | IS66 family insertion sequence element accessory protein TnpB | - |
| LNN29_RS24090 (10556) | 10556..10753 | + | 198 | Protein_15 | IS66 family transposase ISCro1 | Transposase |
| LNN29_RS24095 (10775) | 10775..10908 | - | 134 | Protein_16 | IS66 family transposase ISCro1 | Transposase |
| LNN29_RS24100 (10994) | 10994..11581 | - | 588 | WP_229321790.1 | hypothetical protein | - |
| LNN29_RS24110 (12870) | 12870..13682 | - | 813 | WP_229321791.1 | hypothetical protein | - |
| LNN29_RS24115 (13991) | 13991..14320 | - | 330 | Protein_20 | integrase core domain-containing protein | - |
| LNN29_RS24120 (14415) | 14415..14609 | + | 195 | Protein_21 | plasmid segregation protein ParM | - |
| LNN29_RS24125 (14636) | 14636..15427 | - | 792 | Protein_22 | IS630 family transposase | - |
| LNN29_RS24130 (15893) | 15893..16645 | + | 753 | WP_229321792.1 | Invasin | VF |
| LNN29_RS24135 (17305) | 17305..21483 | + | 4179 | WP_229321793.1 | Invasin | VF |
| LNN29_RS24140 (21780) | 21780..21965 | + | 186 | WP_000264903.1 | hypothetical protein | - |
| LNN29_RS24145 (21985) | 21985..22254 | + | 270 | Protein_26 | DUF2913 family protein | - |
| LNN29_RS24150 (22178) | 22178..22360 | + | 183 | WP_001246914.1 | hypothetical protein | - |
| LNN29_RS24155 (23367) | 23367..24593 | + | 1227 | WP_001119619.1 | phosphoadenosine phosphosulfate reductase | - |
| LNN29_RS24160 (24578) | 24578..25231 | + | 654 | WP_000528462.1 | ParB N-terminal domain-containing protein | - |
| LNN29_RS24165 (25376) | 25376..27571 | - | 2196 | WP_148713339.1 | Ferric aerobactin receptor | VF |
| LNN29_RS24170 (27577) | 27577..28914 | - | 1338 | WP_000710669.1 | L-lysine N6-monooxygenase | VF |
| LNN29_RS24175 (28911) | 28911..30653 | - | 1743 | WP_001015706.1 | Aerobactin synthase | VF |
| LNN29_RS24180 (30653) | 30653..31600 | - | 948 | WP_001287504.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| LNN29_RS24185 (31601) | 31601..33325 | - | 1725 | WP_002433343.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| LNN29_RS24190 (33461) | 33461..34654 | + | 1194 | WP_001134631.1 | MFS transporter | - |
| LNN29_RS24195 (34879) | 34879..37884 | - | 3006 | WP_024257006.1 | Invasin | VF |
| LNN29_RS24200 (37917) | 37917..38180 | - | 264 | Protein_37 | IS66 family transposase ISCro1 | Transposase |
| LNN29_RS24205 (38200) | 38200..38547 | - | 348 | WP_000624596.1 | IS66 family transposase ISCro1 | Transposase |
| LNN29_RS24210 (38547) | 38547..39197 | - | 651 | WP_000993941.1 | IS66 family transposase IS679 | Transposase |
| LNN29_RS24215 (39284) | 39284..39629 | + | 346 | Protein_40 | IS4/IS5 family transposase | - |
| LNN29_RS24220 (39907) | 39907..40776 | - | 870 | Protein_41 | IS110 family transposase ISEc66 | Transposase |
| LNN29_RS24225 (40930) | 40930..41358 | + | 429 | Protein_42 | hypothetical protein | - |
| LNN29_RS24230 (41279) | 41279..42850 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| LNN29_RS24235 (42870) | 42870..43217 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| LNN29_RS24240 (43217) | 43217..43894 | - | 678 | WP_001682408.1 | IS66 family transposase ISCro1 | Transposase |
| LNN29_RS24245 (43949) | 43949..44128 | + | 180 | Protein_46 | IS4/IS5 family transposase | - |
| LNN29_RS24250 (44176) | 44176..44332 | - | 157 | Protein_47 | hypothetical protein | - |
| LNN29_RS24255 (44743) | 44743..44862 | - | 120 | Protein_48 | IS4 family transposase ISLpn6 | Transposase |
| LNN29_RS24260 (44917) | 44917..45297 | + | 381 | WP_001132570.1 | colicin-like pore-forming protein | - |
| LNN29_RS24265 (45315) | 45315..45662 | - | 348 | WP_000762575.1 | colicin E1 family microcin immunity protein | - |
| LNN29_RS24270 (45784) | 45784..46137 | + | 354 | WP_000142422.1 | DUF6404 family protein | - |
| LNN29_RS24275 (46209) | 46209..46477 | - | 269 | Protein_52 | hypothetical protein | - |
| LNN29_RS24280 (46474) | 46474..46734 | - | 261 | WP_000343091.1 | hypothetical protein | - |
| LNN29_RS24285 (47351) | 47351..47764 | + | 414 | WP_000465034.1 | hypothetical protein | - |
| LNN29_RS24290 (47766) | 47766..48548 | + | 783 | WP_058799171.1 | site-specific integrase | - |
| LNN29_RS24295 (48679) | 48679..48954 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| LNN29_RS24300 (48948) | 48948..49592 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| LNN29_RS24305 (49821) | 49821..50792 | + | 972 | WP_001103691.1 | plasmid segregation protein ParM | - |
| LNN29_RS24310 (50797) | 50797..51189 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| LNN29_RS24315 (51194) | 51194..52465 | - | 1272 | WP_058799170.1 | Y-family DNA polymerase | - |
| LNN29_RS24320 (52465) | 52465..52902 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LNN29_RS24325 (52899) | 52899..53147 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| LNN29_RS24330 (53565) | 53565..54467 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| LNN29_RS24335 (54464) | 54464..54775 | + | 312 | WP_031942433.1 | hypothetical protein | - |
| LNN29_RS24340 (54851) | 54851..55534 | + | 684 | WP_000086147.1 | DNA methylase | - |
| LNN29_RS24345 (55535) | 55535..55756 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| LNN29_RS24350 (55770) | 55770..56204 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| LNN29_RS24355 (56250) | 56250..57026 | + | 777 | WP_052929989.1 | hypothetical protein | - |
| LNN29_RS24360 (57439) | 57439..57864 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| LNN29_RS24365 (57911) | 57911..58333 | + | 423 | WP_000271744.1 | DUF1380 family protein | - |
| LNN29_RS24370 (58330) | 58330..58521 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| LNN29_RS24375 (58799) | 58799..60466 | - | 1668 | WP_001762494.1 | group II intron reverse transcriptase/maturase | - |
| LNN29_RS24380 (61616) | 61616..62050 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| LNN29_RS24385 (62144) | 62144..62410 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| LNN29_RS24390 (62475) | 62475..63416 | + | 942 | WP_052940124.1 | Recombination-promoting nuclease RpnA | VF |
| LNN29_RS24395 (63478) | 63478..63660 | + | 183 | WP_000150323.1 | hypothetical protein | - |
| LNN29_RS24400 (63691) | 63691..63942 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| LNN29_RS24405 (64522) | 64522..65370 | + | 849 | WP_001578092.1 | DUF4942 domain-containing protein | - |
| LNN29_RS24410 (65456) | 65456..65758 | - | 303 | WP_229321794.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| LNN29_RS24415 (66025) | 66025..66357 | + | 333 | WP_001284001.1 | IncI1-type relaxosome accessory protein NikA | - |
| LNN29_RS24420 (66368) | 66368..69066 | + | 2699 | Protein_81 | Protein TraI | Relaxase |
| LNN29_RS24425 (69103) | 69103..71394 | - | 2292 | WP_001289276.1 | F-type conjugative transfer protein TrbC | - |
| LNN29_RS24430 (71387) | 71387..72457 | - | 1071 | WP_000151576.1 | IncI1-type conjugal transfer protein TrbB | - |
| LNN29_RS24435 (72476) | 72476..73684 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (73864) | 73864..73926 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (73864) | 73864..73926 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (73864) | 73864..73926 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (73864) | 73864..73926 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| LNN29_RS24440 (73976) | 73976..74128 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| LNN29_RS24445 (74200) | 74200..74451 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| LNN29_RS25270 (74951) | 74951..75046 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| LNN29_RS24455 (75111) | 75111..75248 | - | 138 | WP_047088497.1 | hypothetical protein | - |
| LNN29_RS24460 (75293) | 75293..76519 | - | 1227 | WP_024186316.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| LNN29_RS24465 (76578) | 76578..76982 | + | 405 | WP_001175009.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| LNN29_RS24470 (77314) | 77314..77523 | - | 210 | WP_032178830.1 | hemolysin expression modulator Hha | - |
| LNN29_RS24475 (77621) | 77621..78283 | - | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LNN29_RS24480 (78354) | 78354..80522 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| LNN29_RS24485 (80619) | 80619..81203 | - | 585 | WP_001037985.1 | IncI1-type conjugal transfer protein TraX | - |
| LNN29_RS24490 (81232) | 81232..82434 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| LNN29_RS24495 (82401) | 82401..83015 | - | 615 | WP_000337400.1 | IncI1-type conjugal transfer protein TraV | - |
| LNN29_RS24500 (83015) | 83015..86059 | - | 3045 | WP_229321789.1 | IncI1-type conjugal transfer protein TraU | - |
| LNN29_RS24505 (86116) | 86116..87654 | - | 1539 | WP_001547431.1 | IS66 family transposase ISEc8 | Transposase |
| LNN29_RS24510 (87704) | 87704..88051 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| LNN29_RS24515 (88048) | 88048..88428 | - | 381 | WP_072157534.1 | IS66 family transposase ISEc8 | Transposase |
| LNN29_RS24520 (88521) | 88521..89336 | - | 816 | Protein_101 | IS4 family transposase ISSfl9 | Transposase |
| LNN29_RS24525 (89375) | 89375..90100 | + | 726 | WP_104920585.1 | conjugal transfer complement resistance protein TraT | - |
| LNN29_RS24530 (90282) | 90282..90959 | + | 678 | WP_001682408.1 | IS66 family transposase ISCro1 | Transposase |
| LNN29_RS24535 (90959) | 90959..91306 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| LNN29_RS24540 (91326) | 91326..92897 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| LNN29_RS24545 (93060) | 93060..95213 | + | 2154 | WP_104920584.1 | type IV conjugative transfer system coupling protein TraD | - |
| LNN29_RS24550 (95213) | 95213..99826 | + | 4614 | WP_104920583.1 | Multifunctional conjugation protein TraI | Relaxase |
| LNN29_RS24555 (99860) | 99860..100105 | + | 246 | Protein_108 | thermonuclease family protein | - |
| LNN29_RS24560 (100151) | 100151..100360 | + | 210 | WP_001302200.1 | hemolysin expression modulator Hha | - |
| LNN29_RS24565 (100398) | 100398..100988 | + | 591 | WP_104920582.1 | DUF2726 domain-containing protein | - |
| LNN29_RS24570 (101228) | 101228..101482 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| LNN29_RS24575 (101589) | 101589..101773 | + | 185 | Protein_112 | protein CopA/IncA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|