MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 34058 bp
Accession: NZ_CP086547 Location: 1..34058 Organism: Escherichia coli strain Ec-042-T0 Replicon: plasmid pEc-042-T0_3
Accession: NZ_CP086547 Location: 1..34058 Organism: Escherichia coli strain Ec-042-T0 Replicon: plasmid pEc-042-T0_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN55_RS23230 (LNN55_23225) | 628..2490 | + | 1863 | WP_000847103.1 | relaxosome-coupling protein TaxB | - |
| LNN55_RS23235 (LNN55_23230) | 2499..2921 | + | 423 | WP_001328552.1 | cag pathogenicity island Cag12 family protein | - |
| LNN55_RS23240 (LNN55_23235) | 2905..3210 | + | 306 | WP_000147045.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| LNN55_RS23245 (LNN55_23240) | 3311..3745 | + | 435 | WP_242881453.1 | hypothetical protein | - |
| LNN55_RS23250 (LNN55_23245) | 3837..4145 | + | 309 | WP_000647577.1 | hypothetical protein | - |
| LNN55_RS23255 (LNN55_23250) | 4142..4636 | + | 495 | WP_001215681.1 | thermonuclease family protein | - |
| LNN55_RS23260 (LNN55_23255) | 4718..5980 | + | 1263 | WP_000517489.1 | AAA family ATPase | - |
| LNN55_RS23265 (LNN55_23260) | 5984..6556 | + | 573 | WP_001199073.1 | hypothetical protein | - |
| LNN55_RS23270 (LNN55_23265) | 6561..8714 | + | 2154 | WP_001235747.1 | type IA DNA topoisomerase | - |
| LNN55_RS23275 (LNN55_23270) | 8711..8917 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| LNN55_RS23280 (LNN55_23275) | 8933..9397 | + | 465 | WP_001293133.1 | H-NS family nucleoid-associated regulatory protein | - |
| LNN55_RS23285 (LNN55_23280) | 9501..10157 | + | 657 | WP_000972911.1 | hypothetical protein | - |
| LNN55_RS23290 (LNN55_23285) | 10240..10629 | + | 390 | WP_223196981.1 | hypothetical protein | - |
| LNN55_RS23295 (LNN55_23290) | 10714..11538 | + | 825 | WP_016238959.1 | tyrosine-type recombinase/integrase | - |
| LNN55_RS23300 (LNN55_23295) | 11643..12302 | + | 660 | WP_000516230.1 | division plane positioning ATPase MipZ | - |
| LNN55_RS23305 (LNN55_23300) | 12468..12770 | + | 303 | WP_001062964.1 | hypothetical protein | - |
| LNN55_RS23310 (LNN55_23305) | 12807..13058 | + | 252 | WP_000905709.1 | hypothetical protein | - |
| LNN55_RS23315 (LNN55_23310) | 13630..14157 | - | 528 | WP_000577047.1 | DUF2726 domain-containing protein | - |
| LNN55_RS23320 (LNN55_23315) | 14293..14697 | - | 405 | WP_000654313.1 | hypothetical protein | - |
| LNN55_RS23325 (LNN55_23320) | 14763..15770 | - | 1008 | WP_000243324.1 | replication initiation protein | - |
| LNN55_RS23330 (LNN55_23325) | 17314..17649 | + | 336 | WP_001147119.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LNN55_RS23335 (LNN55_23330) | 17646..17996 | + | 351 | WP_000127483.1 | hypothetical protein | - |
| LNN55_RS23340 (LNN55_23335) | 18635..19150 | + | 516 | WP_001025396.1 | J domain-containing protein | - |
| LNN55_RS23345 (LNN55_23340) | 19255..19797 | + | 543 | WP_001083908.1 | hypothetical protein | - |
| LNN55_RS23350 (LNN55_23345) | 19794..20045 | + | 252 | WP_001230708.1 | hypothetical protein | Toxin Detail |
| LNN55_RS23355 (LNN55_23350) | 20032..20259 | + | 228 | WP_000801440.1 | hypothetical protein | Antitoxin Detail |
| LNN55_RS23360 (LNN55_23355) | 20651..20950 | + | 300 | WP_000650313.1 | hypothetical protein | - |
| LNN55_RS23365 (LNN55_23360) | 21042..21407 | + | 366 | WP_000854262.1 | hypothetical protein | - |
| LNN55_RS23370 (LNN55_23365) | 21682..21855 | + | 174 | WP_071821486.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| LNN55_RS23375 (LNN55_23370) | 22218..22721 | + | 504 | WP_000781818.1 | DNA distortion polypeptide 1 | - |
| LNN55_RS23380 (LNN55_23375) | 22725..23954 | + | 1230 | WP_058815700.1 | DNA relaxase/nickase TaxC | - |
| LNN55_RS23385 (LNN55_23380) | 24031..24324 | + | 294 | WP_000134733.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| LNN55_RS23390 (LNN55_23385) | 24321..24536 | + | 216 | WP_000760375.1 | EexN family lipoprotein | - |
| LNN55_RS23395 (LNN55_23390) | 24713..24889 | + | 177 | WP_000660496.1 | hypothetical protein | - |
| LNN55_RS23400 (LNN55_23395) | 24892..25512 | + | 621 | WP_001299949.1 | lytic transglycosylase domain-containing protein | - |
| LNN55_RS23405 (LNN55_23400) | 25526..25852 | + | 327 | WP_000008647.1 | TrbC/VirB2 family protein | - |
| LNN55_RS23410 (LNN55_23405) | 25871..28618 | + | 2748 | WP_000105985.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| LNN55_RS23415 (LNN55_23410) | 28630..29346 | + | 717 | WP_000832280.1 | type IV secretion system protein | - |
| LNN55_RS23420 (LNN55_23415) | 29358..30452 | + | 1095 | WP_000046889.1 | type IV secretion system protein | - |
| LNN55_RS23425 (LNN55_23420) | 30967..31653 | + | 687 | WP_001290765.1 | type IV secretion system protein | - |
| LNN55_RS23430 (LNN55_23425) | 31650..32558 | + | 909 | WP_001299943.1 | P-type conjugative transfer protein VirB9 | - |
| LNN55_RS23435 (LNN55_23430) | 32551..33669 | + | 1119 | WP_000131271.1 | VirB10/TraB/TrbI family type IV secretion system protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|