MGE detailed information
MGE type: Mobilizable plasmid MGE length: 47185 bp
Accession: NZ_CP086546 Location: 1..47185 Organism: Escherichia coli strain Ec-042-T0 Replicon: plasmid pEc-042-T0_2
Accession: NZ_CP086546 Location: 1..47185 Organism: Escherichia coli strain Ec-042-T0 Replicon: plasmid pEc-042-T0_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN55_RS22945 (46) | 46..1077 | + | 1032 | WP_023518831.1 | plasmid replication initiator RepA | - |
| LNN55_RS22950 (2146) | 2146..2655 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| LNN55_RS22955 (2711) | 2711..3313 | - | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| LNN55_RS22960 (3667) | 3667..5013 | + | 1347 | WP_039052405.1 | protein YagA | - |
| LNN55_RS22965 (5520) | 5520..5822 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| LNN55_RS22970 (5819) | 5819..6445 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| LNN55_RS22975 (6633) | 6633..7397 | - | 765 | Protein_6 | translesion error-prone DNA polymerase V subunit UmuC | - |
| LNN55_RS22980 (7400) | 7400..7639 | - | 240 | Protein_7 | S24 family peptidase | - |
| LNN55_RS22985 (7769) | 7769..8077 | + | 309 | Protein_8 | DUF1380 family protein | - |
| LNN55_RS22990 (8122) | 8122..8892 | + | 771 | WP_011264064.1 | hypothetical protein | - |
| LNN55_RS22995 (9310) | 9310..9735 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| LNN55_RS23000 (9782) | 9782..10204 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| LNN55_RS23005 (10201) | 10201..10392 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| LNN55_RS23010 (10463) | 10463..10777 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| LNN55_RS23015 (11161) | 11161..11235 | + | 75 | Protein_14 | single-stranded DNA-binding protein | - |
| LNN55_RS23020 (11236) | 11236..11790 | + | 555 | Protein_15 | hypothetical protein | - |
| LNN55_RS23025 (11777) | 11777..12130 | + | 354 | Protein_16 | plasmid SOS inhibition protein A | - |
| LNN55_RS23030 (12127) | 12127..12723 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| LNN55_RS23035 (13170) | 13170..13556 | + | 387 | WP_190324863.1 | hypothetical protein | - |
| LNN55_RS23040 (13800) | 13800..14234 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| LNN55_RS23045 (14328) | 14328..14594 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| LNN55_RS23050 (14771) | 14771..15160 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| LNN55_RS23055 (15157) | 15157..16059 | + | 903 | WP_011264057.1 | Recombination-promoting nuclease RpnA | VF |
| LNN55_RS23060 (16121) | 16121..16327 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| LNN55_RS23065 (16358) | 16358..16609 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| LNN55_RS23070 (17189) | 17189..18037 | + | 849 | WP_001599394.1 | DUF4942 domain-containing protein | - |
| LNN55_RS23075 (18124) | 18124..18459 | - | 336 | WP_021529212.1 | hypothetical protein | - |
| LNN55_RS23080 (18693) | 18693..19025 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| LNN55_RS23085 (19036) | 19036..21735 | + | 2700 | WP_011264053.1 | Protein TraI | Relaxase |
| LNN55_RS23090 (21773) | 21773..24064 | - | 2292 | WP_011264051.1 | F-type conjugative transfer protein TrbC | - |
| LNN55_RS23095 (24057) | 24057..25127 | - | 1071 | WP_011264050.1 | IncI1-type conjugal transfer protein TrbB | - |
| LNN55_RS23100 (25146) | 25146..26354 | - | 1209 | WP_011264049.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (26534) | 26534..26591 | - | 58 | NuclAT_1 | - | - |
| - (26534) | 26534..26591 | - | 58 | NuclAT_1 | - | - |
| - (26534) | 26534..26591 | - | 58 | NuclAT_1 | - | - |
| - (26534) | 26534..26591 | - | 58 | NuclAT_1 | - | - |
| LNN55_RS23105 (26661) | 26661..27443 | - | 783 | WP_023063753.1 | protein FinQ | - |
| LNN55_RS23110 (27639) | 27639..27956 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| LNN55_RS23115 (27953) | 27953..28486 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| LNN55_RS23120 (28580) | 28580..29725 | - | 1146 | WP_039023136.1 | Beta-lactamase | ARG |
| LNN55_RS23130 (30933) | 30933..31595 | + | 663 | Protein_37 | hypothetical protein | VF |
| LNN55_RS23135 (33229) | 33229..34383 | + | 1155 | WP_001139955.1 | site-specific integrase | - |
| LNN55_RS23140 (34534) | 34534..35358 | + | 825 | WP_023518851.1 | conjugal transfer protein TraE | - |
| LNN55_RS23145 (35444) | 35444..36646 | + | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| LNN55_RS23150 (36706) | 36706..37290 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| LNN55_RS23155 (37685) | 37685..37801 | + | 117 | Protein_42 | IncI1-type conjugal transfer lipoprotein TraH | - |
| LNN55_RS23160 (37800) | 37800..39554 | + | 1755 | Protein_43 | DotA/TraY family protein | - |
| LNN55_RS23165 (39625) | 39625..40287 | + | 663 | WP_000644796.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LNN55_RS23170 (40359) | 40359..40568 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| LNN55_RS23175 (40960) | 40960..41136 | + | 177 | WP_001054897.1 | hypothetical protein | - |
| LNN55_RS23580 (41201) | 41201..41296 | - | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| LNN55_RS23185 (41797) | 41797..42048 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| LNN55_RS23190 (42120) | 42120..42272 | - | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| - (42324) | 42324..42384 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (42324) | 42324..42384 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (42324) | 42324..42384 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (42324) | 42324..42384 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| LNN55_RS23195 (42593) | 42593..42967 | + | 375 | WP_223349261.1 | hypothetical protein | - |
| LNN55_RS23200 (43120) | 43120..44277 | + | 1158 | Protein_51 | IS1380 family transposase ISEcp1 | Transposase |
| LNN55_RS23205 (44333) | 44333..45030 | + | 698 | WP_095033700.1 | IS1-like element IS1B family transposase | - |
| LNN55_RS23210 (45041) | 45041..45349 | - | 309 | WP_039023235.1 | transcription termination/antitermination NusG family protein | - |
| LNN55_RS23215 (45791) | 45791..46078 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| LNN55_RS23220 (46116) | 46116..46274 | - | 159 | Protein_55 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|