MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 34058 bp
Accession: NZ_CP086535 Location: 1..34058 Organism: Escherichia coli strain Ec-042-T5-ESBL Replicon: plasmid pEc-042-T5-ESBL_3
Accession: NZ_CP086535 Location: 1..34058 Organism: Escherichia coli strain Ec-042-T5-ESBL Replicon: plasmid pEc-042-T5-ESBL_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN41_RS23225 (LNN41_23220) | 1066..2160 | - | 1095 | WP_000046889.1 | type IV secretion system protein | - |
| LNN41_RS23230 (LNN41_23225) | 2172..2888 | - | 717 | WP_000832280.1 | type IV secretion system protein | - |
| LNN41_RS23235 (LNN41_23230) | 2900..5647 | - | 2748 | WP_000105985.1 | Type IV secretion system protein virB4 | VF |
| LNN41_RS23240 (LNN41_23235) | 5666..5992 | - | 327 | WP_000008647.1 | Type IV secretion system protein virB2 | VF |
| LNN41_RS23245 (LNN41_23240) | 6006..6626 | - | 621 | WP_001299949.1 | Type IV secretion system protein virB1 | VF |
| LNN41_RS23250 (LNN41_23245) | 6629..6805 | - | 177 | WP_000660496.1 | hypothetical protein | - |
| LNN41_RS23255 (LNN41_23250) | 6982..7197 | - | 216 | WP_000760375.1 | EexN family lipoprotein | - |
| LNN41_RS23260 (LNN41_23255) | 7194..7487 | - | 294 | WP_000134733.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| LNN41_RS23265 (LNN41_23260) | 7564..8793 | - | 1230 | WP_058815700.1 | hypothetical protein | Relaxase |
| LNN41_RS23270 (LNN41_23265) | 8797..9300 | - | 504 | WP_000781818.1 | DNA distortion polypeptide 1 | - |
| LNN41_RS23275 (LNN41_23270) | 9663..9836 | - | 174 | WP_071821486.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| LNN41_RS23280 (LNN41_23275) | 10111..10476 | - | 366 | WP_000854262.1 | hypothetical protein | - |
| LNN41_RS23285 (LNN41_23280) | 10568..10867 | - | 300 | WP_000650313.1 | hypothetical protein | - |
| LNN41_RS23290 (LNN41_23285) | 11259..11486 | - | 228 | WP_000801440.1 | hypothetical protein | Antitoxin Detail |
| LNN41_RS23295 (LNN41_23290) | 11473..11724 | - | 252 | WP_001230708.1 | hypothetical protein | Toxin Detail |
| LNN41_RS23300 (LNN41_23295) | 11721..12263 | - | 543 | WP_001083908.1 | hypothetical protein | - |
| LNN41_RS23305 (LNN41_23300) | 12368..12883 | - | 516 | WP_001025396.1 | J domain-containing protein | - |
| LNN41_RS23310 (LNN41_23305) | 13522..13872 | - | 351 | WP_000127483.1 | hypothetical protein | - |
| LNN41_RS23315 (LNN41_23310) | 13869..14204 | - | 336 | WP_001147119.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LNN41_RS23320 (LNN41_23315) | 15748..16755 | + | 1008 | WP_000243324.1 | replication initiation protein | - |
| LNN41_RS23325 (LNN41_23320) | 16821..17225 | + | 405 | WP_000654313.1 | hypothetical protein | - |
| LNN41_RS23330 (LNN41_23325) | 17361..17888 | + | 528 | WP_000577047.1 | DUF2726 domain-containing protein | - |
| LNN41_RS23335 (LNN41_23330) | 18460..18711 | - | 252 | WP_000905709.1 | hypothetical protein | - |
| LNN41_RS23340 (LNN41_23335) | 18748..19050 | - | 303 | WP_001062964.1 | hypothetical protein | - |
| LNN41_RS23345 (LNN41_23340) | 19216..19875 | - | 660 | WP_000516230.1 | hypothetical protein | VF |
| LNN41_RS23350 (LNN41_23345) | 19980..20804 | - | 825 | WP_016238959.1 | Tyrosine recombinase XerD | VF |
| LNN41_RS23355 (LNN41_23350) | 20889..21278 | - | 390 | WP_223196981.1 | hypothetical protein | - |
| LNN41_RS23360 (LNN41_23355) | 21361..22017 | - | 657 | WP_000972911.1 | hypothetical protein | - |
| LNN41_RS23365 (LNN41_23360) | 22121..22585 | - | 465 | WP_001293133.1 | H-NS family nucleoid-associated regulatory protein | - |
| LNN41_RS23370 (LNN41_23365) | 22601..22807 | - | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| LNN41_RS23375 (LNN41_23370) | 22804..24957 | - | 2154 | WP_001235747.1 | type IA DNA topoisomerase | - |
| LNN41_RS23380 (LNN41_23375) | 24962..25534 | - | 573 | WP_001199073.1 | hypothetical protein | - |
| LNN41_RS23385 (LNN41_23380) | 25538..26800 | - | 1263 | WP_000517489.1 | AAA family ATPase | - |
| LNN41_RS23390 (LNN41_23385) | 26882..27376 | - | 495 | WP_001215681.1 | thermonuclease family protein | - |
| LNN41_RS23395 (LNN41_23390) | 27373..27681 | - | 309 | WP_000647577.1 | hypothetical protein | - |
| LNN41_RS23400 (LNN41_23395) | 27773..28207 | - | 435 | WP_242881453.1 | hypothetical protein | - |
| LNN41_RS23405 (LNN41_23400) | 28308..28613 | - | 306 | WP_000147045.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| LNN41_RS23410 (LNN41_23405) | 28597..29019 | - | 423 | WP_001328552.1 | cag pathogenicity island Cag12 family protein | - |
| LNN41_RS23415 (LNN41_23410) | 29028..30890 | - | 1863 | WP_000847103.1 | relaxosome-coupling protein TaxB | - |
| LNN41_RS23420 (LNN41_23415) | 30877..31905 | - | 1029 | WP_000017224.1 | Type IV secretion system protein VirB11 | VF |
| LNN41_RS23425 (LNN41_23420) | 31907..33025 | - | 1119 | WP_000131271.1 | Type IV secretion system protein virB10 | VF |
| LNN41_RS23430 (LNN41_23425) | 33018..33926 | - | 909 | WP_001299943.1 | Type IV secretion system protein virB9 | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|