MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 33826 bp
Accession: NZ_CP086476 Location: 1..33826 Organism: Escherichia coli strain Ec-050-T20-ESBL Replicon: plasmid pEc-050-T20-ESBL_6
Accession: NZ_CP086476 Location: 1..33826 Organism: Escherichia coli strain Ec-050-T20-ESBL Replicon: plasmid pEc-050-T20-ESBL_6
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN47_RS25910 (LNN47_25915) | 564..1388 | - | 825 | WP_016238959.1 | Tyrosine recombinase XerD | VF |
| LNN47_RS25915 (LNN47_25920) | 1473..1862 | - | 390 | WP_236115859.1 | hypothetical protein | - |
| LNN47_RS25920 (LNN47_25925) | 1945..2601 | - | 657 | WP_000972911.1 | hypothetical protein | - |
| LNN47_RS25925 (LNN47_25930) | 2705..3169 | - | 465 | WP_001293133.1 | H-NS family nucleoid-associated regulatory protein | - |
| LNN47_RS25930 (LNN47_25935) | 3185..3391 | - | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| LNN47_RS25935 (LNN47_25940) | 3388..5541 | - | 2154 | WP_001235747.1 | type IA DNA topoisomerase | - |
| LNN47_RS25940 (LNN47_25945) | 5546..6118 | - | 573 | WP_001199073.1 | hypothetical protein | - |
| LNN47_RS25945 (LNN47_25950) | 6122..7384 | - | 1263 | WP_000517489.1 | AAA family ATPase | - |
| LNN47_RS25950 (LNN47_25955) | 7466..7960 | - | 495 | WP_001215681.1 | thermonuclease family protein | - |
| LNN47_RS25955 (LNN47_25960) | 7957..8265 | - | 309 | WP_000647577.1 | hypothetical protein | - |
| LNN47_RS25960 (LNN47_25965) | 8357..8605 | - | 249 | WP_001290044.1 | hypothetical protein | - |
| LNN47_RS25965 (LNN47_25970) | 8660..8965 | - | 306 | WP_000147045.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| LNN47_RS25970 (LNN47_25975) | 8949..9371 | - | 423 | WP_001328552.1 | cag pathogenicity island Cag12 family protein | - |
| LNN47_RS25975 (LNN47_25980) | 9380..11242 | - | 1863 | WP_000847103.1 | relaxosome-coupling protein TaxB | - |
| LNN47_RS25980 (LNN47_25985) | 11229..12257 | - | 1029 | WP_000017224.1 | Type IV secretion system protein VirB11 | VF |
| LNN47_RS25985 (LNN47_25990) | 12259..13377 | - | 1119 | WP_000131271.1 | Type IV secretion system protein virB10 | VF |
| LNN47_RS25990 (LNN47_25995) | 13370..14278 | - | 909 | WP_001299943.1 | Type IV secretion system protein virB9 | VF |
| LNN47_RS25995 (LNN47_26000) | 14275..14961 | - | 687 | WP_001290765.1 | Type IV secretion system protein virB8 | VF |
| LNN47_RS26000 (LNN47_26005) | 15476..16570 | - | 1095 | WP_000046889.1 | type IV secretion system protein | - |
| LNN47_RS26005 (LNN47_26010) | 16582..17298 | - | 717 | WP_242923902.1 | type IV secretion system protein | - |
| LNN47_RS26010 (LNN47_26015) | 17310..20057 | - | 2748 | WP_000105985.1 | Type IV secretion system protein virB4 | VF |
| LNN47_RS26015 (LNN47_26020) | 20076..20402 | - | 327 | WP_000008647.1 | Type IV secretion system protein virB2 | VF |
| LNN47_RS26020 (LNN47_26025) | 20416..21036 | - | 621 | WP_111530677.1 | Type IV secretion system protein virB1 | VF |
| LNN47_RS26025 (LNN47_26030) | 21039..21215 | - | 177 | WP_000660496.1 | hypothetical protein | - |
| LNN47_RS26030 (LNN47_26035) | 21392..21607 | - | 216 | WP_000760375.1 | EexN family lipoprotein | - |
| LNN47_RS26035 (LNN47_26040) | 21604..21897 | - | 294 | WP_000134733.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| LNN47_RS26040 (LNN47_26045) | 21974..23203 | - | 1230 | WP_000539545.1 | hypothetical protein | Relaxase |
| LNN47_RS26045 (LNN47_26050) | 23207..23710 | - | 504 | WP_000781818.1 | DNA distortion polypeptide 1 | - |
| LNN47_RS26050 (LNN47_26055) | 24073..24246 | - | 174 | WP_071821486.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| LNN47_RS26055 (LNN47_26060) | 24521..24886 | - | 366 | WP_000854262.1 | hypothetical protein | - |
| LNN47_RS26060 (LNN47_26065) | 24978..25277 | - | 300 | WP_000650313.1 | hypothetical protein | - |
| LNN47_RS26065 (LNN47_26070) | 25669..25896 | - | 228 | WP_000801440.1 | hypothetical protein | Antitoxin Detail |
| LNN47_RS26070 (LNN47_26075) | 25883..26134 | - | 252 | WP_001230708.1 | hypothetical protein | Toxin Detail |
| LNN47_RS26075 (LNN47_26080) | 26131..26673 | - | 543 | WP_001083908.1 | hypothetical protein | - |
| LNN47_RS26080 (LNN47_26085) | 26778..27293 | - | 516 | WP_001025396.1 | J domain-containing protein | - |
| LNN47_RS26085 (LNN47_26090) | 27932..28282 | - | 351 | WP_000127483.1 | hypothetical protein | - |
| LNN47_RS26090 (LNN47_26095) | 28279..28614 | - | 336 | WP_001147119.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LNN47_RS26095 (LNN47_26100) | 30158..31165 | + | 1008 | WP_000243324.1 | replication initiation protein | - |
| LNN47_RS26100 (LNN47_26105) | 31231..31635 | + | 405 | WP_000654313.1 | hypothetical protein | - |
| LNN47_RS26105 (LNN47_26110) | 31771..32298 | + | 528 | WP_000577047.1 | DUF2726 domain-containing protein | - |
| LNN47_RS26110 (LNN47_26115) | 32870..33121 | - | 252 | WP_000905709.1 | hypothetical protein | - |
| LNN47_RS26115 (LNN47_26120) | 33158..33460 | - | 303 | WP_001062964.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|