MGE detailed information
MGE type: Prophage MGE length: 57903 bp
Accession: NZ_CP086391 Location: 1901898..1959800 Organism: Escherichia coli strain 1585m1 Replicon: chromosome
Accession: NZ_CP086391 Location: 1901898..1959800 Organism: Escherichia coli strain 1585m1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LM401_RS11425 (1898147) | 1898147..1900573 | - | 2427 | WP_000041535.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LM401_RS11430 (1900772) | 1900772..1901077 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| LM401_RS11435 (1901185) | 1901185..1901895 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| LM401_RS11440 (1901898) | 1901898..1902458 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| LM401_RS11445 (1902493) | 1902493..1902834 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| LM401_RS11450 (1902969) | 1902969..1903295 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| LM401_RS11455 (1903501) | 1903501..1904715 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LM401_RS11460 (1904727) | 1904727..1905746 | + | 1020 | WP_000836057.1 | Zn-dependent oxidoreductase | - |
| LM401_RS11465 (1905934) | 1905934..1907214 | - | 1281 | WP_162721605.1 | Putative defective protein IntQ ; Integrase | Integrase |
| LM401_RS11470 (1907249) | 1907249..1907500 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| LM401_RS11475 (1907573) | 1907573..1910044 | - | 2472 | WP_001515375.1 | exonuclease | - |
| LM401_RS11480 (1910138) | 1910138..1910329 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LM401_RS11485 (1910326) | 1910326..1910514 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LM401_RS11490 (1911082) | 1911082..1911300 | - | 219 | WP_001171952.1 | protein YdfC | - |
| LM401_RS25690 (1911330) | 1911330..1911458 | - | 129 | WP_000344930.1 | protein YdfB | - |
| LM401_RS11495 (1911460) | 1911460..1911615 | - | 156 | WP_000379588.1 | DUF1391 family protein | - |
| LM401_RS11500 (1911784) | 1911784..1912191 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| LM401_RS11505 (1912273) | 1912273..1912500 | + | 228 | WP_000921596.1 | Cro/CI family transcriptional regulator | - |
| LM401_RS11510 (1912484) | 1912484..1913005 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| LM401_RS11515 (1912986) | 1912986..1913951 | + | 966 | WP_000054514.1 | hypothetical protein | - |
| LM401_RS11520 (1913992) | 1913992..1914414 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| LM401_RS11525 (1914411) | 1914411..1914900 | + | 490 | Protein_1824 | class I SAM-dependent methyltransferase | - |
| LM401_RS11530 (1915378) | 1915378..1915797 | + | 420 | Protein_1825 | hypothetical protein | - |
| LM401_RS11535 (1916453) | 1916453..1917502 | + | 1050 | Protein_1826 | ISNCY family transposase ISCARN112 | Transposase |
| LM401_RS11540 (1917623) | 1917623..1917772 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| LM401_RS11545 (1918209) | 1918209..1918541 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LM401_RS11550 (1918744) | 1918744..1919049 | - | 306 | WP_071593935.1 | protein YdfV | - |
| LM401_RS11555 (1919074) | 1919074..1919313 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LM401_RS11560 (1919313) | 1919313..1919600 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LM401_RS11565 (1919672) | 1919672..1919827 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LM401_RS11570 (1920044) | 1920044..1920295 | + | 252 | WP_001463433.1 | protein Rem | - |
| LM401_RS11575 (1920362) | 1920362..1920640 | + | 279 | WP_001515373.1 | hypothetical protein | - |
| LM401_RS11580 (1920642) | 1920642..1921691 | + | 1050 | WP_001515372.1 | DUF968 domain-containing protein | - |
| LM401_RS11585 (1921709) | 1921709..1922086 | + | 378 | WP_001204787.1 | antiterminator Q family protein | - |
| LM401_RS11590 (1922242) | 1922242..1922766 | - | 525 | WP_000780584.1 | lipocalin family protein | - |
| LM401_RS11595 (1922959) | 1922959..1923918 | + | 960 | WP_000592549.1 | DUF523 and DUF1722 domain-containing protein | - |
| LM401_RS11600 (1924325) | 1924325..1925038 | + | 714 | WP_001146314.1 | HTH-type transcriptional regulator GadW | VF |
| LM401_RS11605 (1925229) | 1925229..1925444 | + | 216 | WP_001515371.1 | phage lysis protein EssD | - |
| LM401_RS11610 (1925449) | 1925449..1925763 | + | 315 | WP_001515370.1 | YdfR family protein | - |
| LM401_RS11615 (1925819) | 1925819..1926352 | + | 534 | WP_001515369.1 | lysozyme | - |
| LM401_RS11620 (1926349) | 1926349..1926846 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LM401_RS11625 (1927208) | 1927208..1927420 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LM401_RS11630 (1927431) | 1927431..1927619 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LM401_RS11635 (1927622) | 1927622..1927687 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| LM401_RS11640 (1927766) | 1927766..1927921 | + | 156 | WP_001309517.1 | protein YnfN | - |
| LM401_RS11645 (1928093) | 1928093..1928266 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LM401_RS11650 (1928418) | 1928418..1928828 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LM401_RS11655 (1928886) | 1928886..1929119 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LM401_RS11660 (1929508) | 1929508..1930053 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| LM401_RS11665 (1930028) | 1930028..1931953 | + | 1926 | WP_001027292.1 | phage terminase large subunit family protein | - |
| LM401_RS11670 (1931950) | 1931950..1932156 | + | 207 | WP_000198149.1 | gpW family protein | - |
| LM401_RS11675 (1932153) | 1932153..1932968 | + | 816 | Protein_1854 | phage portal protein | - |
| LM401_RS11680 (1932980) | 1932980..1934188 | - | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| LM401_RS11685 (1934277) | 1934277..1935092 | + | 816 | Protein_1856 | phage portal protein | - |
| LM401_RS11690 (1935073) | 1935073..1936392 | + | 1320 | WP_000123305.1 | S49 family peptidase | - |
| LM401_RS11695 (1936402) | 1936402..1936734 | + | 333 | WP_001299443.1 | head decoration protein | - |
| LM401_RS11700 (1936790) | 1936790..1937815 | + | 1026 | WP_228637038.1 | major capsid protein | - |
| LM401_RS11705 (1937857) | 1937857..1938252 | + | 396 | WP_032327600.1 | DNA-packaging protein FI | - |
| LM401_RS11710 (1938264) | 1938264..1938617 | + | 354 | WP_000752960.1 | head-tail joining protein | - |
| LM401_RS11715 (1938629) | 1938629..1939207 | + | 579 | WP_000985132.1 | phage tail protein | - |
| LM401_RS11720 (1939204) | 1939204..1939599 | + | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| LM401_RS11725 (1939607) | 1939607..1940347 | + | 741 | WP_047656713.1 | phage tail protein | - |
| LM401_RS11730 (1940363) | 1940363..1940785 | + | 423 | WP_000479155.1 | phage minor tail protein G | - |
| LM401_RS11735 (1940767) | 1940767..1941201 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| LM401_RS11740 (1941194) | 1941194..1943756 | + | 2563 | Protein_1867 | phage tail tape measure protein | - |
| LM401_RS11745 (1943753) | 1943753..1944082 | + | 330 | WP_000847345.1 | phage tail protein | - |
| LM401_RS11750 (1944082) | 1944082..1944780 | + | 699 | WP_044861874.1 | phage minor tail protein L | - |
| LM401_RS11755 (1944785) | 1944785..1945528 | + | 744 | WP_044861875.1 | C40 family peptidase | - |
| LM401_RS11760 (1945525) | 1945525..1946097 | + | 573 | WP_000847626.1 | tail assembly protein | - |
| LM401_RS11765 (1946158) | 1946158..1949571 | + | 3414 | WP_229014384.1 | host specificity protein J | - |
| LM401_RS11770 (1949642) | 1949642..1950241 | + | 600 | WP_001233093.1 | Outer membrane protein X | VF |
| LM401_RS11775 (1950306) | 1950306..1953266 | + | 2961 | WP_072034704.1 | phage tail protein | - |
| LM401_RS11780 (1953266) | 1953266..1953841 | + | 576 | WP_000885616.1 | tail fiber assembly protein | - |
| LM401_RS11785 (1953939) | 1953939..1954529 | - | 591 | WP_000086514.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LM401_RS11790 (1954846) | 1954846..1955079 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LM401_RS11795 (1955148) | 1955148..1955261 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LM401_RS11800 (1955865) | 1955865..1957148 | + | 1284 | Protein_1879 | MHS family MFS transporter YdfJ | - |
| LM401_RS11805 (1957237) | 1957237..1958697 | + | 1461 | WP_000527751.1 | mannitol dehydrogenase family protein | - |
| LM401_RS11810 (1958733) | 1958733..1958936 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LM401_RS11815 (1959114) | 1959114..1959800 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| LM401_RS11820 (1959889) | 1959889..1960635 | - | 747 | WP_000636575.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| LM401_RS11825 (1960772) | 1960772..1962817 | + | 2046 | WP_001315525.1 | peptidyl-dipeptidase Dcp | - |
| LM401_RS11830 (1962862) | 1962862..1963380 | - | 519 | WP_001024810.1 | 2-oxo-tetronate isomerase | - |
| LM401_RS11835 (1963656) | 1963656..1964048 | + | 393 | WP_000671744.1 | YdeI family stress tolerance OB fold protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|