MGE detailed information
MGE type: Prophage MGE length: 62288 bp
Accession: NZ_CP086334 Location: 612517..674804 Organism: Escherichia coli strain EBJ003 Replicon: chromosome
Accession: NZ_CP086334 Location: 612517..674804 Organism: Escherichia coli strain EBJ003 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5N12_RS03120 (608416) | 608416..609636 | + | 1221 | WP_021523109.1 | DNA-binding transcriptional repressor Mlc | - |
| C5N12_RS03125 (609761) | 609761..610456 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| C5N12_RS03130 (610409) | 610409..611701 | - | 1293 | WP_071593650.1 | voltage-gated ClC-type chloride channel ClcB | - |
| C5N12_RS03135 (611860) | 611860..612474 | - | 615 | WP_001520571.1 | Tat proofreading chaperone DmsD | - |
| C5N12_RS03140 (612517) | 612517..613371 | - | 855 | WP_020233477.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| C5N12_RS03145 (613373) | 613373..613990 | - | 618 | WP_001520568.1 | dimethylsulfoxide reductase subunit B | - |
| C5N12_RS03150 (614001) | 614001..616424 | - | 2424 | WP_072170800.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| C5N12_RS03155 (616485) | 616485..618911 | - | 2427 | WP_001551145.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| C5N12_RS03160 (619110) | 619110..619415 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| C5N12_RS03165 (619523) | 619523..620233 | + | 711 | WP_105313477.1 | YnfC family lipoprotein | - |
| C5N12_RS03170 (620236) | 620236..620796 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| C5N12_RS03175 (620831) | 620831..621172 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| C5N12_RS03180 (621307) | 621307..621633 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| C5N12_RS03185 (621839) | 621839..623053 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| C5N12_RS03190 (623065) | 623065..624084 | + | 1020 | WP_000836037.1 | Zn-dependent oxidoreductase | - |
| C5N12_RS03195 (624272) | 624272..625552 | - | 1281 | WP_021523105.1 | Putative defective protein IntQ ; Integrase | Integrase |
| C5N12_RS03200 (625587) | 625587..625838 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| C5N12_RS03205 (625911) | 625911..628393 | - | 2483 | Protein_626 | 3'-5' exoribonuclease | - |
| C5N12_RS03210 (628487) | 628487..628678 | - | 192 | WP_001083276.1 | lysis protein YdfD | - |
| C5N12_RS03215 (628675) | 628675..628863 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| C5N12_RS03220 (629350) | 629350..629925 | - | 576 | WP_000344950.1 | hypothetical protein | - |
| C5N12_RS03225 (629927) | 629927..630082 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C5N12_RS03230 (630251) | 630251..630658 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| C5N12_RS03235 (630739) | 630739..630966 | + | 228 | WP_000921596.1 | Cro/CI family transcriptional regulator | - |
| C5N12_RS03240 (630950) | 630950..631471 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| C5N12_RS03245 (631452) | 631452..632417 | + | 966 | WP_000054487.1 | hypothetical protein | - |
| C5N12_RS03250 (632458) | 632458..632856 | + | 399 | WP_001151242.1 | DUF977 family protein | - |
| C5N12_RS03255 (633059) | 633059..633724 | + | 666 | WP_021523102.1 | epoxyqueuosine reductase QueH | - |
| C5N12_RS03260 (633933) | 633933..634547 | + | 615 | WP_001265627.1 | hypothetical protein | - |
| C5N12_RS03265 (634550) | 634550..635572 | + | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
| C5N12_RS03270 (636077) | 636077..637099 | + | 1023 | Protein_639 | ISNCY family transposase ISCARN112 | Transposase |
| C5N12_RS03275 (637220) | 637220..637369 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| C5N12_RS03280 (637806) | 637806..638138 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| C5N12_RS03285 (638341) | 638341..638646 | - | 306 | WP_001326990.1 | protein YdfV | - |
| C5N12_RS03290 (638671) | 638671..638910 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| C5N12_RS03295 (638910) | 638910..639197 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| C5N12_RS03300 (639269) | 639269..639424 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C5N12_RS03305 (639641) | 639641..639892 | + | 252 | WP_000980994.1 | protein Rem | - |
| C5N12_RS03310 (639959) | 639959..640237 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| C5N12_RS03315 (640239) | 640239..641288 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| C5N12_RS03320 (641302) | 641302..642054 | + | 753 | WP_001047135.1 | antitermination protein | - |
| C5N12_RS03325 (642332) | 642332..642421 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| C5N12_RS03330 (642476) | 642476..642688 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| C5N12_RS03335 (642989) | 642989..643204 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| C5N12_RS03340 (643568) | 643568..643738 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| C5N12_RS03345 (643958) | 643958..644173 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| C5N12_RS03350 (644178) | 644178..644489 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| C5N12_RS03355 (644486) | 644486..645019 | + | 534 | WP_001092971.1 | lysozyme | - |
| C5N12_RS03360 (645016) | 645016..645513 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| C5N12_RS03365 (645876) | 645876..646088 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| C5N12_RS03370 (646099) | 646099..646287 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| C5N12_RS03375 (646290) | 646290..646355 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| C5N12_RS03380 (646435) | 646435..646590 | + | 156 | WP_001309517.1 | protein YnfN | - |
| C5N12_RS03385 (646762) | 646762..646935 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| C5N12_RS03390 (647087) | 647087..647497 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| C5N12_RS03395 (647555) | 647555..647788 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| C5N12_RS03400 (648177) | 648177..648722 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| C5N12_RS03405 (648697) | 648697..650622 | + | 1926 | WP_001027269.1 | phage terminase large subunit family protein | - |
| C5N12_RS03410 (650619) | 650619..650825 | + | 207 | WP_000198149.1 | gpW family protein | - |
| C5N12_RS03415 (650822) | 650822..652423 | + | 1602 | WP_001356819.1 | phage portal protein | - |
| C5N12_RS03420 (652404) | 652404..653723 | + | 1320 | WP_020233915.1 | S49 family peptidase | - |
| C5N12_RS03425 (653733) | 653733..654065 | + | 333 | WP_001708751.1 | head decoration protein | - |
| C5N12_RS03430 (654120) | 654120..655145 | + | 1026 | WP_000063277.1 | major capsid protein | - |
| C5N12_RS03435 (655187) | 655187..655585 | + | 399 | WP_020233914.1 | DNA-packaging protein FI | - |
| C5N12_RS03440 (655597) | 655597..655950 | + | 354 | WP_000752979.1 | head-tail joining protein | - |
| C5N12_RS03445 (655962) | 655962..656540 | + | 579 | WP_000975070.1 | phage tail protein | - |
| C5N12_RS03450 (656537) | 656537..656932 | + | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| C5N12_RS03455 (656940) | 656940..657680 | + | 741 | WP_001349920.1 | phage tail protein | - |
| C5N12_RS03460 (657696) | 657696..658118 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| C5N12_RS03465 (658100) | 658100..658534 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| C5N12_RS03470 (658527) | 658527..661088 | + | 2562 | WP_048219008.1 | phage tail tape measure protein | - |
| C5N12_RS03475 (661085) | 661085..661414 | + | 330 | WP_000847345.1 | phage tail protein | - |
| C5N12_RS03480 (661414) | 661414..662112 | + | 699 | WP_001551186.1 | phage minor tail protein L | - |
| C5N12_RS03485 (662118) | 662118..662861 | + | 744 | WP_032153655.1 | C40 family peptidase | - |
| C5N12_RS03490 (662798) | 662798..663400 | + | 603 | WP_049286672.1 | tail assembly protein | - |
| C5N12_RS03495 (663461) | 663461..666940 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| C5N12_RS03500 (667008) | 667008..667607 | + | 600 | WP_001542091.1 | Outer membrane protein X | VF |
| C5N12_RS03505 (667672) | 667672..670071 | + | 2400 | WP_032152843.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C5N12_RS03510 (670068) | 670068..670349 | + | 282 | WP_000654154.1 | hypothetical protein | - |
| C5N12_RS03515 (670359) | 670359..671063 | + | 705 | WP_000235967.1 | tail fiber domain-containing protein | - |
| C5N12_RS03520 (671074) | 671074..671367 | + | 294 | WP_000355609.1 | hypothetical protein | - |
| C5N12_RS03525 (671387) | 671387..671497 | + | 111 | Protein_690 | tail fiber assembly protein | - |
| C5N12_RS03530 (671595) | 671595..672185 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| C5N12_RS03535 (672502) | 672502..672735 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| C5N12_RS03540 (672804) | 672804..672917 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| C5N12_RS03545 (673521) | 673521..674804 | + | 1284 | Protein_694 | MHS family MFS transporter YdfJ | - |
| C5N12_RS03550 (674893) | 674893..676353 | + | 1461 | WP_000527786.1 | mannitol dehydrogenase family protein | - |
| C5N12_RS03555 (676389) | 676389..676592 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C5N12_RS03560 (676770) | 676770..677456 | - | 687 | WP_000215553.1 | DNA-binding transcriptional regulator rspR | - |
| C5N12_RS03565 (677545) | 677545..678291 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|