MGE detailed information
MGE type: Conjugative plasmid MGE length: 83340 bp
Accession: NZ_CP086260 Location: 1..83340 Organism: Escherichia coli strain SCPM-O-B-9427 Replicon: plasmid pB-9427-1
Accession: NZ_CP086260 Location: 1..83340 Organism: Escherichia coli strain SCPM-O-B-9427 Replicon: plasmid pB-9427-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH79_RS25660 (LMH79_25685) | 696..1154 | + | 459 | WP_000095886.1 | hypothetical protein | VF |
| LMH79_RS25665 (LMH79_25690) | 1258..2766 | + | 1509 | WP_000880806.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| LMH79_RS25670 (LMH79_25695) | 2768..3862 | + | 1095 | WP_000697154.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| LMH79_RS25675 (LMH79_25700) | 3924..4460 | + | 537 | WP_000111521.1 | hypothetical protein | VF |
| LMH79_RS25680 (LMH79_25705) | 4505..4990 | + | 486 | WP_001080767.1 | hypothetical protein | VF |
| LMH79_RS25685 (LMH79_25710) | 5006..5632 | + | 627 | WP_000939245.1 | prepilin peptidase | - |
| LMH79_RS25690 (LMH79_25715) | 5650..7011 | + | 1362 | WP_001168171.1 | hypothetical protein | VF |
| LMH79_RS25695 (LMH79_25720) | 7125..7319 | + | 195 | Protein_8 | integrase | - |
| LMH79_RS25700 (LMH79_25725) | 7484..8305 | + | 822 | WP_000845373.1 | hypothetical protein | - |
| LMH79_RS25705 (LMH79_25730) | 8407..9609 | + | 1203 | WP_000979993.1 | conjugal transfer protein TraF | - |
| LMH79_RS25710 (LMH79_25735) | 9713..10171 | + | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
| LMH79_RS25715 (LMH79_25740) | 10168..11004 | + | 837 | WP_000745049.1 | hypothetical protein | VF |
| LMH79_RS25720 (LMH79_25745) | 10988..12136 | + | 1149 | WP_000775210.1 | putative protein YggR | VF |
| LMH79_RS25725 (LMH79_25750) | 12133..12423 | + | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| LMH79_RS25730 (LMH79_25755) | 12487..16548 | + | 4062 | WP_000842453.1 | DUF5710 domain-containing protein | - |
| LMH79_RS25735 (LMH79_25760) | 16565..16915 | + | 351 | WP_001056367.1 | hypothetical protein | - |
| LMH79_RS25740 (LMH79_25765) | 16927..17622 | + | 696 | WP_001287545.1 | DotI/IcmL family type IV secretion protein | - |
| LMH79_RS25745 (LMH79_25770) | 17633..18607 | + | 975 | WP_000547385.1 | hypothetical protein | VF |
| LMH79_RS25750 (LMH79_25775) | 18611..19948 | + | 1338 | WP_001272017.1 | conjugal transfer protein TraO | - |
| LMH79_RS25755 (LMH79_25780) | 19945..20658 | + | 714 | WP_000787003.1 | conjugal transfer protein TraP | - |
| LMH79_RS25760 (LMH79_25785) | 20655..21185 | + | 531 | WP_000987021.1 | conjugal transfer protein TraQ | - |
| LMH79_RS25765 (LMH79_25790) | 21232..21630 | + | 399 | WP_000088813.1 | hypothetical protein | - |
| LMH79_RS25770 (LMH79_25795) | 21687..21839 | + | 153 | Protein_23 | TraS | - |
| LMH79_RS25775 (LMH79_25800) | 21853..22671 | + | 819 | WP_072107751.1 | conjugal transfer protein TraT | - |
| LMH79_RS25780 (LMH79_25805) | 22966..26010 | + | 3045 | WP_001024767.1 | hypothetical protein | - |
| LMH79_RS25785 (LMH79_25810) | 26010..26630 | + | 621 | WP_000286854.1 | hypothetical protein | - |
| LMH79_RS25790 (LMH79_25815) | 26588..27793 | + | 1206 | WP_001189549.1 | conjugal transfer protein TraW | - |
| LMH79_RS25795 (LMH79_25820) | 27790..28359 | + | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| LMH79_RS25800 (LMH79_25825) | 28434..30599 | + | 2166 | WP_000691810.1 | DotA/TraY family protein | - |
| LMH79_RS25805 (LMH79_25830) | 30688..31338 | + | 651 | WP_001044247.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LMH79_RS25810 (LMH79_25835) | 31612..33198 | + | 1587 | WP_228355609.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| LMH79_RS25815 (LMH79_25840) | 33336..33488 | - | 153 | WP_001302699.1 | Hok/Gef family protein | - |
| LMH79_RS25820 (LMH79_25845) | 33818..34060 | + | 243 | WP_001401586.1 | hypothetical protein | - |
| LMH79_RS25825 (LMH79_25850) | 34157..34348 | + | 192 | WP_115240886.1 | hypothetical protein | - |
| LMH79_RS25830 (LMH79_25855) | 34360..34728 | + | 369 | WP_143410569.1 | hypothetical protein | - |
| LMH79_RS25835 (LMH79_25860) | 34732..34947 | + | 216 | WP_000266544.1 | hypothetical protein | - |
| LMH79_RS25840 (LMH79_25865) | 35145..35768 | - | 624 | WP_001155252.1 | helix-turn-helix domain-containing protein | - |
| LMH79_RS25845 (LMH79_25870) | 35927..36394 | + | 468 | WP_000598962.1 | thermonuclease family protein | - |
| LMH79_RS25850 (LMH79_25875) | 36544..36720 | + | 177 | WP_001054907.1 | hypothetical protein | - |
| LMH79_RS25855 (LMH79_25880) | 36783..37034 | - | 252 | WP_001081067.1 | DinQ-like type I toxin DqlB | - |
| LMH79_RS25860 (LMH79_25885) | 37711..38973 | + | 1263 | WP_001028764.1 | IncI1-type conjugal transfer protein TrbA | - |
| LMH79_RS25865 (LMH79_25890) | 38970..40094 | + | 1125 | WP_083574964.1 | DsbC family protein | - |
| LMH79_RS25870 (LMH79_25895) | 40075..42375 | + | 2301 | WP_033816586.1 | F-type conjugative transfer protein TrbC | - |
| LMH79_RS25875 (LMH79_25900) | 42596..45316 | - | 2721 | WP_228355603.1 | Protein TraI | Relaxase |
| LMH79_RS25880 (LMH79_25905) | 45328..45660 | - | 333 | WP_001291056.1 | plasmid mobilization protein MobA | - |
| LMH79_RS25885 (LMH79_25910) | 45893..46228 | + | 336 | WP_000157083.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| LMH79_RS25890 (LMH79_25915) | 46314..47162 | - | 849 | WP_166726845.1 | DUF4942 domain-containing protein | - |
| LMH79_RS25895 (LMH79_25920) | 47396..47707 | + | 312 | WP_228355604.1 | hypothetical protein | - |
| LMH79_RS25900 (LMH79_25925) | 47741..47992 | + | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| LMH79_RS25905 (LMH79_25930) | 48023..48256 | - | 234 | WP_001329993.1 | hypothetical protein | - |
| LMH79_RS25910 (LMH79_25935) | 48256..49158 | - | 903 | WP_228355605.1 | Recombination-promoting nuclease RpnA | VF |
| LMH79_RS25915 (LMH79_25940) | 49155..49436 | - | 282 | WP_001476624.1 | hypothetical protein | - |
| LMH79_RS25920 (LMH79_25945) | 49970..51082 | - | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| LMH79_RS25925 (LMH79_25950) | 51136..51336 | - | 201 | Protein_54 | hypothetical protein | - |
| LMH79_RS25930 (LMH79_25955) | 51429..51863 | - | 435 | WP_000218862.1 | hypothetical protein | - |
| LMH79_RS25935 (LMH79_25960) | 52596..53096 | - | 501 | WP_000117631.1 | antirestriction protein ArdA | - |
| LMH79_RS25940 (LMH79_25965) | 53558..54154 | - | 597 | WP_000977995.1 | hypothetical protein | - |
| LMH79_RS25945 (LMH79_25970) | 54151..54870 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| LMH79_RS25950 (LMH79_25975) | 54867..55301 | - | 435 | WP_001579792.1 | conjugation system SOS inhibitor PsiB | - |
| LMH79_RS25955 (LMH79_25980) | 55356..57314 | - | 1959 | WP_048267027.1 | ParB/RepB/Spo0J family partition protein | - |
| LMH79_RS25960 (LMH79_25985) | 57373..57606 | - | 234 | WP_000005981.1 | DUF905 domain-containing protein | - |
| LMH79_RS25965 (LMH79_25990) | 57664..58191 | - | 528 | WP_052969439.1 | single-stranded DNA-binding protein | - |
| LMH79_RS25970 (LMH79_25995) | 58544..58891 | - | 348 | WP_012680970.1 | hypothetical protein | - |
| LMH79_RS25975 (LMH79_26000) | 58962..59153 | - | 192 | WP_001024835.1 | hypothetical protein | - |
| LMH79_RS25980 (LMH79_26005) | 59150..59572 | - | 423 | WP_000271727.1 | DUF1380 family protein | - |
| LMH79_RS25985 (LMH79_26010) | 59619..60044 | - | 426 | WP_001198875.1 | antirestriction protein | - |
| LMH79_RS25990 (LMH79_26015) | 60458..61228 | - | 771 | WP_032242371.1 | hypothetical protein | - |
| LMH79_RS25995 (LMH79_26020) | 61273..61791 | - | 519 | WP_228355611.1 | DUF1380 family protein | - |
| LMH79_RS26000 (LMH79_26025) | 61721..61942 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| LMH79_RS26005 (LMH79_26030) | 61943..62626 | - | 684 | WP_000086132.1 | DNA methylase | - |
| LMH79_RS26010 (LMH79_26035) | 62702..63013 | - | 312 | WP_001732000.1 | hypothetical protein | - |
| LMH79_RS26015 (LMH79_26040) | 63010..63912 | - | 903 | WP_228355612.1 | DUF1281 domain-containing protein | - |
| LMH79_RS26020 (LMH79_26045) | 64331..64579 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| LMH79_RS26025 (LMH79_26050) | 64576..65013 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LMH79_RS26030 (LMH79_26055) | 65013..66287 | + | 1275 | Protein_75 | Y-family DNA polymerase | - |
| LMH79_RS26035 (LMH79_26060) | 66475..67101 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| LMH79_RS26040 (LMH79_26065) | 67098..67412 | + | 315 | WP_228355606.1 | ribbon-helix-helix domain-containing protein | - |
| LMH79_RS26045 (LMH79_26070) | 67931..69277 | - | 1347 | WP_021537814.1 | protein YagA | - |
| LMH79_RS26050 (LMH79_26075) | 69631..70233 | + | 603 | WP_228355607.1 | ProQ/FINO family protein | - |
| LMH79_RS26055 (LMH79_26080) | 70471..70737 | + | 267 | WP_000627831.1 | hypothetical protein | - |
| LMH79_RS26060 (LMH79_26085) | 71006..71209 | - | 204 | Protein_81 | hypothetical protein | - |
| LMH79_RS26065 (LMH79_26090) | 71315..71590 | - | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LMH79_RS26070 (LMH79_26095) | 71590..71874 | - | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| LMH79_RS26075 (LMH79_26100) | 72782..73813 | - | 1032 | WP_000907880.1 | plasmid replication initiator RepA | - |
| LMH79_RS26080 (LMH79_26105) | 74649..75155 | + | 507 | WP_001335626.1 | transcription termination/antitermination NusG family protein | - |
| LMH79_RS26085 (LMH79_26110) | 75296..75958 | + | 663 | WP_000154142.1 | hypothetical protein | - |
| LMH79_RS26090 (LMH79_26115) | 76225..76845 | + | 621 | WP_000176497.1 | DUF1449 family protein | - |
| LMH79_RS26095 (LMH79_26120) | 76872..78566 | + | 1695 | WP_000482665.1 | flotillin family protein | - |
| LMH79_RS26100 (LMH79_26125) | 78647..78889 | + | 243 | WP_001271734.1 | PilI type IV pilus biogenesis protein | - |
| LMH79_RS26105 (LMH79_26130) | 79005..79340 | + | 336 | WP_001335624.1 | hypothetical protein | - |
| LMH79_RS27110 | 79567..79692 | + | 126 | WP_267081388.1 | hypothetical protein | - |
| LMH79_RS26110 (LMH79_26135) | 79868..80638 | + | 771 | WP_228355608.1 | hypothetical protein | VF |
| LMH79_RS26115 (LMH79_26140) | 80642..81079 | + | 438 | WP_000539951.1 | hypothetical protein | VF |
| LMH79_RS26120 (LMH79_26145) | 81111..82730 | + | 1620 | WP_001035565.1 | Outer membrane lipoprotein BfpB | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|