MGE detailed information
MGE type: Prophage MGE length: 74394 bp
Accession: NZ_CP086133 Location: 642556..716949 Organism: Pantoea agglomerans strain DBM 3797 Replicon: chromosome
Accession: NZ_CP086133 Location: 642556..716949 Organism: Pantoea agglomerans strain DBM 3797 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LKW31_RS03040 (638434) | 638434..639210 | - | 777 | WP_228312400.1 | SprT family zinc-dependent metalloprotease | - |
| LKW31_RS03045 (639210) | 639210..642491 | - | 3282 | WP_228312401.1 | type I restriction endonuclease subunit R | - |
| LKW31_RS03050 (642556) | 642556..643239 | - | 684 | WP_228312402.1 | YecA family protein | - |
| LKW31_RS03055 (643239) | 643239..644489 | - | 1251 | WP_228312403.1 | restriction endonuclease subunit S | - |
| LKW31_RS03060 (644479) | 644479..646002 | - | 1524 | WP_228312404.1 | type I restriction-modification system subunit M | - |
| LKW31_RS03065 (646551) | 646551..647258 | - | 708 | WP_228312405.1 | hypothetical protein | - |
| LKW31_RS03070 (647281) | 647281..648375 | - | 1095 | WP_228312406.1 | inovirus-type Gp2 protein | - |
| LKW31_RS03075 (648492) | 648492..648710 | - | 219 | WP_228312407.1 | AlpA family phage regulatory protein | - |
| LKW31_RS03080 (648813) | 648813..649649 | - | 837 | WP_228312408.1 | hypothetical protein | - |
| LKW31_RS03085 (650005) | 650005..651042 | - | 1038 | WP_064704030.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| LKW31_RS03090 (651042) | 651042..651614 | - | 573 | WP_228312409.1 | phage repressor protein CI | - |
| LKW31_RS03095 (651748) | 651748..652011 | + | 264 | WP_010256626.1 | hypothetical protein | - |
| LKW31_RS03100 (652042) | 652042..652551 | + | 510 | WP_228312410.1 | phage regulatory CII family protein | - |
| LKW31_RS03105 (652561) | 652561..652743 | + | 183 | WP_228312411.1 | DUF2724 domain-containing protein | - |
| LKW31_RS03110 (652745) | 652745..653125 | + | 381 | WP_228312412.1 | hypothetical protein | - |
| LKW31_RS03115 (653194) | 653194..653424 | + | 231 | WP_010256641.1 | DUF2732 family protein | - |
| LKW31_RS03120 (653424) | 653424..653651 | + | 228 | WP_228312413.1 | TraR/DksA family transcriptional regulator | - |
| LKW31_RS03125 (653648) | 653648..654511 | + | 864 | WP_228312414.1 | DNA adenine methylase | - |
| LKW31_RS03130 (654508) | 654508..656754 | + | 2247 | WP_228312415.1 | replication endonuclease | - |
| LKW31_RS03135 (656959) | 656959..657150 | + | 192 | WP_010256650.1 | hypothetical protein | - |
| LKW31_RS03140 (657166) | 657166..657402 | + | 237 | WP_228312416.1 | DinI family protein | - |
| LKW31_RS03145 (657477) | 657477..657734 | + | 258 | WP_228312417.1 | hypothetical protein | - |
| LKW31_RS03150 (658101) | 658101..658355 | + | 255 | WP_029519675.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| LKW31_RS03155 (658352) | 658352..658693 | + | 342 | WP_010256658.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| LKW31_RS03160 (658766) | 658766..659683 | + | 918 | WP_228312418.1 | hypothetical protein | VF |
| LKW31_RS03165 (659735) | 659735..660769 | - | 1035 | WP_228312419.1 | phage portal protein | - |
| LKW31_RS03170 (660769) | 660769..662532 | - | 1764 | WP_010255070.1 | terminase ATPase subunit family protein | - |
| LKW31_RS03175 (662677) | 662677..663525 | + | 849 | WP_115759155.1 | GPO family capsid scaffolding protein | - |
| LKW31_RS03180 (663577) | 663577..664689 | + | 1113 | WP_115759154.1 | phage major capsid protein, P2 family | - |
| LKW31_RS03185 (664693) | 664693..665361 | + | 669 | WP_010256679.1 | terminase endonuclease subunit | - |
| LKW31_RS03190 (665454) | 665454..665924 | + | 471 | WP_228312420.1 | head completion/stabilization protein | - |
| LKW31_RS03195 (665924) | 665924..666127 | + | 204 | WP_052270561.1 | tail protein X | - |
| LKW31_RS03200 (666130) | 666130..666348 | + | 219 | WP_010255079.1 | HP1 family phage holin | - |
| LKW31_RS03205 (666332) | 666332..666841 | + | 510 | WP_179257034.1 | lysozyme | - |
| LKW31_RS03210 (666838) | 666838..667260 | + | 423 | WP_228312421.1 | Rz-like lysis system protein LysB | - |
| LKW31_RS03215 (667157) | 667157..667429 | + | 273 | WP_266105119.1 | Rz1-like lysis system protein LysC | - |
| LKW31_RS03220 (667362) | 667362..667829 | + | 468 | WP_228312422.1 | phage tail protein | - |
| LKW31_RS03225 (667826) | 667826..668272 | + | 447 | WP_228312423.1 | phage virion morphogenesis protein | - |
| LKW31_RS03230 (668286) | 668286..669347 | - | 1062 | WP_228312424.1 | hypothetical protein | - |
| LKW31_RS03235 (669445) | 669445..670029 | + | 585 | WP_228312425.1 | phage baseplate assembly protein V | - |
| LKW31_RS03240 (670026) | 670026..670376 | + | 351 | WP_228312426.1 | GPW/gp25 family protein | - |
| LKW31_RS03245 (670381) | 670381..671289 | + | 909 | WP_228312427.1 | baseplate assembly protein | - |
| LKW31_RS03250 (671282) | 671282..671890 | + | 609 | WP_010261146.1 | phage tail protein I | - |
| LKW31_RS03255 (671887) | 671887..672846 | + | 960 | WP_228312428.1 | phage tail protein | - |
| LKW31_RS03260 (672847) | 672847..673248 | + | 402 | WP_228312429.1 | tail fiber assembly protein | - |
| LKW31_RS03265 (673276) | 673276..673668 | - | 393 | WP_228312430.1 | tail fiber assembly protein | - |
| LKW31_RS03270 (673668) | 673668..674309 | - | 642 | WP_228312431.1 | hypothetical protein | - |
| LKW31_RS03275 (674370) | 674370..674948 | + | 579 | WP_228312432.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| LKW31_RS03280 (675029) | 675029..676198 | + | 1170 | WP_010246674.1 | phage tail sheath protein | - |
| LKW31_RS03285 (676211) | 676211..676720 | + | 510 | WP_010246672.1 | phage major tail tube protein | - |
| LKW31_RS03290 (676779) | 676779..677057 | + | 279 | WP_031594560.1 | phage tail assembly protein | - |
| LKW31_RS03295 (677090) | 677090..677215 | + | 126 | WP_071778604.1 | GpE family phage tail protein | - |
| LKW31_RS03300 (677205) | 677205..679667 | + | 2463 | WP_228312433.1 | phage tail tape measure protein | - |
| LKW31_RS03305 (679671) | 679671..680198 | + | 528 | WP_228312434.1 | phage tail protein | - |
| LKW31_RS03310 (680195) | 680195..681367 | + | 1173 | WP_228312435.1 | phage late control D family protein | - |
| LKW31_RS03315 (681436) | 681436..681654 | + | 219 | WP_010678536.1 | ogr/Delta-like zinc finger family protein | - |
| LKW31_RS03320 (681702) | 681702..682109 | - | 408 | WP_228312436.1 | hypothetical protein | - |
| LKW31_RS03330 (682545) | 682545..683336 | - | 792 | WP_228312437.1 | 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase | VF |
| LKW31_RS03335 (683475) | 683475..684059 | + | 585 | WP_172608904.1 | TetR/AcrR family transcriptional regulator | - |
| LKW31_RS03340 (684056) | 684056..684574 | + | 519 | WP_010678532.1 | G/U mismatch-specific DNA glycosylase | - |
| LKW31_RS03345 (684649) | 684649..686490 | - | 1842 | WP_010699749.1 | RNA polymerase sigma factor RpoD | - |
| LKW31_RS03350 (686930) | 686930..688675 | - | 1746 | WP_010699748.1 | DNA primase | - |
| LKW31_RS03355 (688794) | 688794..689009 | - | 216 | WP_001144069.1 | 30S ribosomal protein S21 | - |
| LKW31_RS03360 (689288) | 689288..690301 | + | 1014 | WP_022623892.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| LKW31_RS03365 (690529) | 690529..691134 | - | 606 | WP_060681102.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| LKW31_RS03370 (691243) | 691243..691602 | + | 360 | WP_010249061.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| LKW31_RS03375 (691794) | 691794..692612 | + | 819 | WP_010671134.1 | undecaprenyl-diphosphate phosphatase | - |
| LKW31_RS03380 (692628) | 692628..693860 | - | 1233 | WP_033769843.1 | multifunctional CCA addition/repair protein | - |
| LKW31_RS03385 (694019) | 694019..694639 | - | 621 | WP_010671133.1 | TIGR04211 family SH3 domain-containing protein | - |
| LKW31_RS03390 (694912) | 694912..696222 | + | 1311 | WP_010671132.1 | inorganic triphosphatase | - |
| LKW31_RS03395 (696256) | 696256..699108 | + | 2853 | WP_228312438.1 | bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase | - |
| LKW31_RS03400 (699179) | 699179..700603 | + | 1425 | WP_010249049.1 | Bifunctional protein HldE | VF |
| LKW31_RS03405 (700643) | 700643..701032 | - | 390 | WP_022623887.1 | accessory factor UbiK family protein | - |
| LKW31_RS03410 (701472) | 701472..702128 | + | 657 | WP_022623886.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
| LKW31_RS03415 (702364) | 702364..703149 | + | 786 | WP_033758835.1 | 4,5-DOPA dioxygenase extradiol | - |
| LKW31_RS03420 (703201) | 703201..704361 | - | 1161 | WP_033769850.1 | glutathionylspermidine synthase family protein | - |
| LKW31_RS03425 (704369) | 704369..705040 | - | 672 | WP_010249037.1 | DUF1190 family protein | - |
| LKW31_RS03430 (705183) | 705183..706649 | - | 1467 | WP_010249035.1 | outer membrane channel protein TolC | - |
| LKW31_RS03435 (706863) | 706863..707498 | + | 636 | WP_033758832.1 | ADP-ribose diphosphatase | - |
| LKW31_RS03440 (707495) | 707495..707920 | + | 426 | WP_008925735.1 | DUF1249 family protein | - |
| LKW31_RS03445 (707963) | 707963..708790 | + | 828 | WP_172608901.1 | 3',5'-cyclic-AMP phosphodiesterase | - |
| LKW31_RS03450 (708794) | 708794..709375 | + | 582 | WP_010249032.1 | esterase YqiA | - |
| LKW31_RS03455 (709425) | 709425..711320 | + | 1896 | WP_010249031.1 | DNA topoisomerase IV subunit B | - |
| LKW31_RS03460 (711415) | 711415..712314 | + | 900 | WP_069025387.1 | HTH-type transcriptional regulator DmlR | VF |
| LKW31_RS03465 (712611) | 712611..712919 | - | 309 | WP_010249029.1 | putative quinol monooxygenase | - |
| LKW31_RS03470 (712969) | 712969..713550 | - | 582 | WP_010249028.1 | NAD(P)H-dependent oxidoreductase | - |
| LKW31_RS03475 (713719) | 713719..714483 | + | 765 | WP_228312439.1 | transporter substrate-binding domain-containing protein | - |
| LKW31_RS03480 (714676) | 714676..716949 | + | 2274 | WP_010671122.1 | DNA topoisomerase IV subunit A | - |
| LKW31_RS03485 (716995) | 716995..717732 | + | 738 | WP_010671121.1 | 1-acylglycerol-3-phosphate O-acyltransferase | - |
| LKW31_RS03490 (717874) | 717874..719304 | + | 1431 | WP_010671120.1 | cell division protein FtsP | - |
| LKW31_RS03495 (719403) | 719403..720227 | - | 825 | WP_010249022.1 | 2,5-didehydrogluconate reductase DkgA | - |
| LKW31_RS03500 (720432) | 720432..721340 | + | 909 | WP_010249021.1 | AraC family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|