MGE detailed information
MGE type: Genomic_island MGE length: 14217 bp
Accession: NZ_CP085842 Location: 1535665..1549881 Organism: Escherichia coli strain B95. delta A Replicon: chromosome
Accession: NZ_CP085842 Location: 1535665..1549881 Organism: Escherichia coli strain B95. delta A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJ838_RS07625 (1532480) | 1532480..1534165 | - | 1686 | WP_000628583.1 | ABC transporter ATP-binding protein/permease | - |
| LJ838_RS07630 (1534368) | 1534368..1534490 | + | 123 | WP_120795387.1 | protein YneP | - |
| LJ838_RS07635 (1534456) | 1534456..1535613 | - | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| LJ838_RS07640 (1535665) | 1535665..1537347 | - | 1683 | WP_001318307.1 | sulfatase | - |
| LJ838_RS07645 (1537749) | 1537749..1538510 | - | 762 | WP_000060493.1 | acid stress response transcriptional regulator YdeO | - |
| LJ838_RS07650 (1538585) | 1538585..1538782 | - | 198 | WP_000543384.1 | two-component system connector SafA | - |
| LJ838_RS07655 (1539030) | 1539030..1541309 | - | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| LJ838_RS07660 (1541643) | 1541643..1542557 | - | 915 | WP_000520676.1 | Riboflavin biosynthesis protein RibD | VF |
| LJ838_RS07665 (1542616) | 1542616..1543119 | - | 504 | WP_000825452.1 | putative triacylglyceride transporter | VF |
| LJ838_RS07670 (1543132) | 1543132..1543662 | - | 531 | WP_000876763.1 | Lipoarabinomannan carrier protein LprG | VF |
| LJ838_RS07675 (1543676) | 1543676..1546326 | - | 2651 | Protein_1502 | fimbrial biogenesis outer membrane usher protein | - |
| LJ838_RS07680 (1546368) | 1546368..1547078 | - | 711 | Protein_1503 | 6,7-dimethyl-8-ribityllumazine synthase | VF |
| LJ838_RS07685 (1547439) | 1547439..1547921 | - | 483 | WP_000931227.1 | hypothetical protein | VF |
| LJ838_RS07690 (1548293) | 1548293..1549615 | - | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| LJ838_RS07695 (1549615) | 1549615..1549881 | - | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| LJ838_RS07700 (1550104) | 1550104..1551684 | - | 1581 | Protein_1507 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| LJ838_RS07705 (1551680) | 1551680..1552456 | + | 777 | Protein_1508 | histidine kinase | - |
| LJ838_RS07710 (1552468) | 1552468..1553490 | + | 1023 | WP_000172488.1 | autoinducer 2 ABC transporter substrate-binding protein LsrB | - |
| LJ838_RS07715 (1553517) | 1553517..1554392 | + | 876 | WP_000774188.1 | 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase | - |
| LJ838_RS07720 (1554416) | 1554416..1554706 | + | 291 | WP_000558527.1 | (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.009 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.009 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.007 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.009 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.009 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.009 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.009 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.009 |