MGE detailed information
MGE type: Prophage MGE length: 38674 bp
Accession: NZ_CP085809 Location: 1924848..1963521 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain Raikou Replicon: chromosome
Accession: NZ_CP085809 Location: 1924848..1963521 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain Raikou Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF43_RS09235 (LJF43_09235) | 1920949..1922760 | + | 1812 | WP_001069124.1 | phosphogluconate dehydratase | - |
| LJF43_RS09240 (LJF43_09240) | 1922798..1923439 | + | 642 | WP_000800493.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LJF43_RS09245 (LJF43_09245) | 1923539..1924717 | - | 1179 | WP_000173426.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LJF43_RS09250 (LJF43_09250) | 1924848..1925138 | + | 291 | WP_000257728.1 | DNA damage-inducible protein YebG | - |
| LJF43_RS09255 (LJF43_09255) | 1925206..1925559 | + | 354 | WP_001042123.1 | protein YebF | - |
| LJF43_RS09260 (LJF43_09260) | 1925653..1926312 | + | 660 | WP_000024713.1 | tellurite resistance TerB family protein | - |
| LJF43_RS09265 (LJF43_09265) | 1926526..1928577 | + | 2052 | WP_000936997.1 | oligopeptidase B | - |
| LJF43_RS09270 (LJF43_09270) | 1928614..1929312 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| LJF43_RS09275 (LJF43_09275) | 1929336..1929992 | - | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| LJF43_RS09280 (LJF43_09280) | 1930100..1930330 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF43_RS09285 (LJF43_09285) | 1930468..1930842 | + | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| LJF43_RS09290 (LJF43_09290) | 1930843..1931718 | + | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| LJF43_RS09295 (LJF43_09295) | 1931735..1932088 | + | 354 | WP_000722366.1 | YebY family protein | - |
| - | 1932190..1932333 | - | 144 | - | - | Antitoxin Detail |
| - | 1932229..1932331 | + | 103 | - | - | Toxin Detail |
| LJF43_RS09300 (LJF43_09300) | 1932452..1932760 | - | 309 | Protein_1812 | hypothetical protein ; Integrase | Integrase |
| LJF43_RS09305 (LJF43_09305) | 1932759..1933120 | - | 362 | Protein_1813 | recombinase RecT | - |
| LJF43_RS09310 (LJF43_09310) | 1933121..1933231 | + | 111 | Protein_1814 | replication protein | - |
| LJF43_RS09315 (LJF43_09315) | 1933244..1933639 | + | 396 | Protein_1815 | DUF977 family protein | - |
| LJF43_RS09320 (LJF43_09320) | 1933925..1935055 | - | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| LJF43_RS09325 (LJF43_09325) | 1935451..1937430 | + | 1980 | WP_001237518.1 | alkyl sulfatase dimerization domain-containing protein | - |
| LJF43_RS09330 (LJF43_09330) | 1937839..1938453 | - | 615 | WP_000848063.1 | disulfide bond formation protein B | - |
| LJF43_RS09335 (LJF43_09335) | 1938463..1938621 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| LJF43_RS09340 (LJF43_09340) | 1938754..1939668 | - | 915 | WP_001233444.1 | DMT family transporter | - |
| LJF43_RS09345 (LJF43_09345) | 1940967..1941388 | - | 422 | Protein_1821 | tyrosine-type recombinase/integrase | - |
| LJF43_RS09350 (LJF43_09350) | 1941458..1942729 | + | 1272 | Protein_1822 | IS256 family transposase ISEc39 | Transposase |
| LJF43_RS09355 (LJF43_09355) | 1942705..1942845 | - | 141 | WP_031624337.1 | hypothetical protein | - |
| LJF43_RS09360 (LJF43_09360) | 1943014..1943280 | - | 267 | WP_010989185.1 | hypothetical protein | - |
| LJF43_RS09365 (LJF43_09365) | 1943651..1944070 | + | 420 | WP_000354403.1 | GNAT family N-acetyltransferase | - |
| LJF43_RS09370 (LJF43_09370) | 1944458..1944934 | - | 477 | WP_000030950.1 | hypothetical protein | - |
| LJF43_RS09375 (LJF43_09375) | 1945263..1945658 | - | 396 | WP_000422884.1 | DUF1398 domain-containing protein | - |
| LJF43_RS09380 (LJF43_09380) | 1946405..1947063 | + | 659 | Protein_1828 | hypothetical protein | VF |
| LJF43_RS09385 (LJF43_09385) | 1947348..1947512 | + | 165 | WP_001134857.1 | hypothetical protein | - |
| LJF43_RS09390 (LJF43_09390) | 1947736..1948386 | + | 651 | WP_000986169.1 | protein-serine/threonine phosphatase | - |
| LJF43_RS09395 (LJF43_09395) | 1948405..1948596 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| LJF43_RS09400 (LJF43_09400) | 1948707..1948943 | - | 237 | WP_024131167.1 | YebV family protein | - |
| LJF43_RS09405 (LJF43_09405) | 1949061..1950500 | - | 1440 | WP_010989184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJF43_RS09410 (LJF43_09410) | 1950578..1953211 | - | 2634 | WP_001521100.1 | hypothetical protein | VF |
| LJF43_RS09415 (LJF43_09415) | 1953180..1954463 | - | 1284 | WP_001207300.1 | membrane integrity lipid transport subunit YebS | - |
| LJF43_RS09420 (LJF43_09420) | 1954592..1955089 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| LJF43_RS09425 (LJF43_09425) | 1955187..1955873 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| LJF43_RS09430 (LJF43_09430) | 1955893..1957941 | + | 2049 | WP_001091235.1 | carboxy terminal-processing peptidase | - |
| LJF43_RS09435 (LJF43_09435) | 1958134..1959015 | + | 882 | WP_000984498.1 | protease HtpX | - |
| LJF43_RS09440 (LJF43_09440) | 1959063..1960435 | - | 1373 | Protein_1840 | MFS transporter | - |
| LJF43_RS09445 (LJF43_09445) | 1960611..1961402 | + | 792 | WP_001262197.1 | DNA-binding transcriptional regulator KdgR | - |
| LJF43_RS09450 (LJF43_09450) | 1961614..1961853 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| LJF43_RS09455 (LJF43_09455) | 1962006..1962149 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| LJF43_RS09460 (LJF43_09460) | 1962220..1962507 | + | 288 | WP_001000660.1 | YebO family protein | - |
| LJF43_RS09465 (LJF43_09465) | 1963156..1963299 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| LJF43_RS09470 (LJF43_09470) | 1963312..1963521 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LJF43_RS09475 (LJF43_09475) | 1963741..1965486 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| LJF43_RS09480 (LJF43_09480) | 1965552..1966361 | + | 810 | WP_000010934.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LJF43_RS09485 (LJF43_09485) | 1966358..1966924 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| LJF43_RS09490 (LJF43_09490) | 1967334..1967792 | - | 459 | WP_000156273.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|