NZ_CP0858074226231..4360471

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 134241 bp
Accession: NZ_CP085807        Location: 4226231..4360471         Organism: Salmonella enterica subsp. enterica serovar Typhi strain Suicune       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LJF45_RS20765 (LJF45_20770) 4222030..4223331 + 1302 WP_000637594.1 anaerobic C4-dicarboxylate transporter DcuA -
LJF45_RS20770 (LJF45_20775) 4223452..4223799 + 348 WP_000887832.1 divalent cation tolerance protein CutA -
LJF45_RS20775 (LJF45_20780) 4223775..4225478 + 1704 WP_000068881.1 protein-disulfide reductase DsbD -
LJF45_RS20780 (LJF45_20785) 4225515..4226090 + 576 WP_001188506.1 transcriptional regulator -
LJF45_RS20790 (LJF45_20795) 4226441..4227700 + 1260 WP_000954536.1 Prophage integrase IntS ; Integrase Integrase
LJF45_RS20795 (LJF45_20800) 4228011..4229294 + 1284 WP_000975154.1 SH3 domain-containing protein -
LJF45_RS20800 (LJF45_20805) 4229379..4229648 + 270 Protein_4061 integrase -
LJF45_RS20805 (LJF45_20810) 4230275..4231057 - 783 WP_000511749.1 hypothetical protein ; Integrase Integrase
LJF45_RS20810 (LJF45_20815) 4231327..4231521 + 195 WP_162009227.1 hypothetical protein -
LJF45_RS20815 (LJF45_20820) 4231914..4232135 - 222 WP_000193665.1 helix-turn-helix transcriptional regulator -
LJF45_RS20820 (LJF45_20825) 4232132..4232593 - 462 WP_000246267.1 hypothetical protein -
LJF45_RS20825 (LJF45_20830) 4233140..4234813 + 1674 WP_010989301.1 hypothetical protein -
LJF45_RS20830 (LJF45_20835) 4234894..4237179 + 2286 WP_010989300.1 hypothetical protein -
LJF45_RS20835 (LJF45_20840) 4237483..4237734 + 252 WP_024131240.1 hypothetical protein -
LJF45_RS20840 (LJF45_20845) 4237816..4238268 + 453 WP_000434168.1 hypothetical protein -
LJF45_RS20845 (LJF45_20850) 4238448..4238936 - 489 WP_000622308.1 GNAT family N-acetyltransferase Toxin Detail
LJF45_RS20850 (LJF45_20855) 4238933..4239226 - 294 WP_001143724.1 DUF1778 domain-containing protein Antitoxin Detail
LJF45_RS20855 (LJF45_20860) 4239653..4240666 - 1014 WP_000449622.1 Tyrosine recombinase XerC ; Integrase Integrase
LJF45_RS20860 (LJF45_20865) 4240830..4242419 - 1590 WP_000488995.1 TraI domain-containing protein -
LJF45_RS20865 (LJF45_20870) 4242403..4243914 - 1512 WP_001120833.1 UvrD-helicase domain-containing protein -
LJF45_RS20870 (LJF45_20875) 4244768..4245307 + 540 WP_001210944.1 Vi polysaccharide biosynthesis regulator TviA -
LJF45_RS20875 (LJF45_20880) 4245552..4246829 + 1278 WP_000466893.1 UDP-N-acetyl-D-glucosamine 6-dehydrogenase VF
LJF45_RS20880 (LJF45_20885) 4246832..4247878 + 1047 WP_050190110.1 UDP-N-acetylglucosamine 4-epimerase VF
LJF45_RS20885 (LJF45_20890) 4247902..4250397 + 2496 WP_010989299.1 hypothetical protein VF
LJF45_RS20890 (LJF45_20895) 4250397..4252133 + 1737 WP_000632616.1 Putative glycosyltransferase EpsF VF
LJF45_RS20895 (LJF45_20900) 4252178..4253245 + 1068 WP_000720235.1 hypothetical protein VF
LJF45_RS20900 (LJF45_20905) 4253255..4254049 + 795 WP_001023498.1 Polysialic acid transport protein KpsM VF
LJF45_RS20905 (LJF45_20910) 4254075..4254770 + 696 WP_000467404.1 Polysialic acid transport ATP-binding protein KpsT VF
LJF45_RS20910 (LJF45_20915) 4254793..4256097 + 1305 WP_000431675.1 hypothetical protein VF
LJF45_RS20915 (LJF45_20920) 4256117..4258087 + 1971 WP_000052242.1 Beta-barrel assembly-enhancing protease VF
LJF45_RS20920 (LJF45_20925) 4258389..4259135 - 747 WP_000354257.1 class I SAM-dependent methyltransferase -
LJF45_RS20925 (LJF45_20930) 4259135..4260025 - 891 WP_001681808.1 class I SAM-dependent methyltransferase -
LJF45_RS20930 (LJF45_20935) 4260036..4260293 - 258 WP_001681810.1 YjhX family toxin -
LJF45_RS20935 (LJF45_20940) 4260595..4260705 - 111 Protein_4088 autoinducer 2 ABC transporter substrate-binding protein -
LJF45_RS20940 (LJF45_20945) 4260940..4261284 + 345 Protein_4089 translesion error-prone DNA polymerase V autoproteolytic subunit -
LJF45_RS20945 (LJF45_20950) 4261400..4262425 - 1026 WP_000027757.1 Tyrosine recombinase XerH ; Integrase Integrase
LJF45_RS20950 (LJF45_20955) 4262429..4263061 - 633 WP_000052560.1 helix-turn-helix domain-containing protein -
LJF45_RS20955 (LJF45_20960) 4263178..4263420 + 243 WP_000102106.1 Rha family transcriptional regulator -
LJF45_RS20960 (LJF45_20965) 4263453..4263962 + 510 WP_000460852.1 phage regulatory CII family protein -
LJF45_RS20965 (LJF45_20970) 4263970..4264170 + 201 WP_000956167.1 DUF2724 domain-containing protein -
LJF45_RS20970 (LJF45_20975) 4264134..4264475 + 342 WP_000963479.1 DUF5347 family protein -
LJF45_RS20975 (LJF45_20980) 4264543..4264776 + 234 WP_001244240.1 DUF2732 family protein -
LJF45_RS20980 (LJF45_20985) 4264776..4265003 + 228 WP_000785510.1 TraR/DksA family transcriptional regulator -
LJF45_RS20985 (LJF45_20990) 4265000..4265176 + 177 Protein_4098 3'-5' exonuclease -
LJF45_RS20990 (LJF45_20995) 4265283..4266491 + 1209 WP_001339197.1 IS4 family transposase IS10R Transposase
LJF45_RS20995 (LJF45_21000) 4266506..4266922 + 417 Protein_4100 3'-5' exonuclease -
LJF45_RS21000 (LJF45_21005) 4266919..4267779 + 861 WP_000104130.1 DNA adenine methylase -
LJF45_RS21005 (LJF45_21010) 4267770..4270165 + 2396 Protein_4102 replication endonuclease -
LJF45_RS21010 (LJF45_21015) 4270333..4270521 + 189 WP_001154438.1 hypothetical protein -
LJF45_RS21015 (LJF45_21020) 4270533..4270766 + 234 WP_001217561.1 DinI family protein -
LJF45_RS21020 (LJF45_21025) 4270862..4271080 + 219 WP_000835188.1 hypothetical protein -
LJF45_RS21025 (LJF45_21030) 4271090..4272154 + 1065 WP_000829584.1 hypothetical protein -
LJF45_RS21030 (LJF45_21035) 4272151..4273215 + 1065 WP_000789323.1 hypothetical protein -
LJF45_RS21035 (LJF45_21040) 4273235..4273930 + 696 WP_000080839.1 hypothetical protein -
LJF45_RS21040 (LJF45_21045) 4273979..4275022 - 1044 WP_001681813.1 phage portal protein -
LJF45_RS21045 (LJF45_21050) 4275022..4276788 - 1767 WP_001098453.1 terminase ATPase subunit family protein -
LJF45_RS21050 (LJF45_21055) 4276931..4277764 + 834 WP_000216272.1 GPO family capsid scaffolding protein -
LJF45_RS21055 (LJF45_21060) 4277781..4278845 + 1065 WP_000730751.1 phage major capsid protein, P2 family -
LJF45_RS21060 (LJF45_21065) 4278849..4279499 + 651 WP_000059175.1 terminase endonuclease subunit -
LJF45_RS21065 (LJF45_21070) 4279593..4280057 + 465 WP_000673540.1 head completion/stabilization protein -
LJF45_RS21070 (LJF45_21075) 4280057..4280260 + 204 WP_000868184.1 tail protein X -
LJF45_RS21075 (LJF45_21080) 4280264..4280479 + 216 WP_000171566.1 HP1 family phage holin -
LJF45_RS21080 (LJF45_21085) 4280460..4280969 + 510 WP_001097942.1 lysozyme -
LJF45_RS21085 (LJF45_21090) 4280974..4281351 + 378 WP_000731034.1 DNZ54_00345 family protein -
LJF45_RS21090 (LJF45_21095) 4281348..4281776 + 429 WP_024131238.1 Rz-like lysis system protein LysB -
LJF45_RS21095 (LJF45_21100) 4281661..4281909 + 249 WP_223229656.1 Rz1-like lysis system protein LysC -
LJF45_RS21100 (LJF45_21105) 4281872..4282303 + 432 WP_001039966.1 phage tail protein -
LJF45_RS21105 (LJF45_21110) 4282296..4282742 + 447 WP_000343944.1 phage virion morphogenesis protein -
LJF45_RS21110 (LJF45_21115) 4282811..4283389 + 579 WP_000993749.1 phage baseplate assembly protein V -
LJF45_RS21115 (LJF45_21120) 4283386..4283745 + 360 WP_000177408.1 GPW/gp25 family protein -
LJF45_RS21120 (LJF45_21125) 4283732..4284640 + 909 WP_000268327.1 baseplate assembly protein -
LJF45_RS21125 (LJF45_21130) 4284633..4285238 + 606 WP_001086816.1 phage tail protein I -
LJF45_RS21130 (LJF45_21135) 4285235..4286854 + 1620 WP_000104806.1 phage tail protein -
LJF45_RS21135 (LJF45_21140) 4286861..4287268 + 408 WP_000006337.1 tail fiber assembly protein -
LJF45_RS21140 (LJF45_21145) 4287466..4288188 - 723 WP_000161708.1 Guanine nucleotide exchange factor SopE VF
LJF45_RS21145 (LJF45_21150) 4288399..4288620 + 222 Protein_4130 helix-turn-helix domain-containing protein -
LJF45_RS21150 (LJF45_21155) 4288723..4289895 + 1173 WP_000046101.1 phage tail sheath protein -
LJF45_RS21155 (LJF45_21160) 4289905..4290420 + 516 WP_001207653.1 phage major tail tube protein -
LJF45_RS21160 (LJF45_21165) 4290475..4290777 + 303 WP_001280965.1 phage tail assembly protein -
LJF45_RS21165 (LJF45_21170) 4290792..4290911 + 120 WP_000763315.1 GpE family phage tail protein -
LJF45_RS21170 (LJF45_21175) 4290904..4293684 + 2781 WP_001282813.1 phage tail tape measure protein -
LJF45_RS21175 (LJF45_21180) 4293684..4294169 + 486 WP_000980405.1 phage tail protein -
LJF45_RS21180 (LJF45_21185) 4294166..4295266 + 1101 WP_001011750.1 phage late control D family protein -
LJF45_RS21185 (LJF45_21190) 4295334..4295552 + 219 WP_001775272.1 ogr/Delta-like zinc finger family protein -
LJF45_RS21190 (LJF45_21195) 4295639..4296016 - 378 WP_001039750.1 hypothetical protein -
LJF45_RS21195 (LJF45_21200) 4296150..4296236 + 87 Protein_4140 peptidase -
LJF45_RS21200 (LJF45_21205) 4296236..4297510 + 1275 WP_000457555.1 Y-family DNA polymerase -
LJF45_RS21205 (LJF45_21210) 4297642..4297911 + 270 WP_001222413.1 hypothetical protein -
LJF45_RS21210 (LJF45_21215) 4298011..4298337 - 327 WP_000911568.1 DUF3085 domain-containing protein -
LJF45_RS21215 (LJF45_21220) 4298412..4299311 - 900 WP_000022216.1 hypothetical protein -
LJF45_RS21220 (LJF45_21225) 4299385..4300293 - 909 WP_000881183.1 hypothetical protein -
LJF45_RS21225 (LJF45_21230) 4300365..4302314 - 1950 WP_001097965.1 zincin-like metallopeptidase domain-containing protein -
LJF45_RS21230 (LJF45_21235) 4302403..4302861 - 459 WP_000115421.1 hypothetical protein -
LJF45_RS21235 (LJF45_21240) 4302939..4303235 - 297 WP_000968700.1 hypothetical protein -
LJF45_RS21240 (LJF45_21245) 4303232..4303684 - 453 WP_000979718.1 hypothetical protein -
LJF45_RS21245 (LJF45_21250) 4303702..4303911 - 210 WP_000018145.1 hypothetical protein -
LJF45_RS21250 (LJF45_21255) 4304282..4304662 - 381 WP_001103837.1 hypothetical protein -
LJF45_RS21255 (LJF45_21260) 4304758..4305060 - 303 WP_001020123.1 hypothetical protein -
LJF45_RS21260 (LJF45_21265) 4305784..4306704 - 921 WP_000907593.1 Tyrosine recombinase XerC ; Integrase Integrase
LJF45_RS21265 (LJF45_21270) 4307970..4308512 + 543 WP_010989295.1 DUF1062 domain-containing protein -
LJF45_RS21270 (LJF45_21275) 4308723..4309364 - 642 WP_000502502.1 ParB N-terminal domain-containing protein -
LJF45_RS21275 (LJF45_21280) 4309349..4310596 - 1248 WP_001283066.1 phosphoadenosine phosphosulfate reductase -
LJF45_RS21280 (LJF45_21285) 4310884..4311243 + 360 WP_010989293.1 hypothetical protein -
LJF45_RS21285 (LJF45_21290) 4311467..4311856 + 390 WP_000993574.1 hypothetical protein -
LJF45_RS21290 (LJF45_21295) 4311892..4313397 - 1506 WP_000213770.1 conjugal transfer protein TraG N-terminal domain-containing protein -
LJF45_RS21295 (LJF45_21300) 4313730..4315127 - 1398 WP_014341560.1 integrating conjugative element protein -
LJF45_RS21300 (LJF45_21305) 4315175..4316143 - 969 WP_000838927.1 TIGR03756 family integrating conjugative element protein -
LJF45_RS21305 (LJF45_21310) 4316140..4316532 - 393 WP_000821941.1 TIGR03757 family integrating conjugative element protein -
LJF45_RS21310 (LJF45_21315) 4316687..4317073 - 387 WP_000054770.1 hypothetical protein -
LJF45_RS21315 (LJF45_21320) 4317228..4319940 - 2713 Protein_4164 conjugative transfer ATPase -
LJF45_RS21320 (LJF45_21325) 4320063..4320512 - 450 WP_000244536.1 TIGR03751 family conjugal transfer lipoprotein -
LJF45_RS21325 (LJF45_21330) 4320499..4321977 - 1479 WP_001165842.1 TIGR03752 family integrating conjugative element protein -
LJF45_RS21330 (LJF45_21335) 4321967..4322866 - 900 WP_001240640.1 TIGR03749 family integrating conjugative element protein -
LJF45_RS21335 (LJF45_21340) 4322866..4323519 - 654 WP_000086082.1 TIGR03746 family integrating conjugative element protein -
LJF45_RS21340 (LJF45_21345) 4323516..4323890 - 375 WP_000848326.1 TIGR03750 family conjugal transfer protein -
LJF45_RS21345 (LJF45_21350) 4323900..4324265 - 366 WP_223228898.1 TIGR03745 family integrating conjugative element membrane protein -
LJF45_RS21350 (LJF45_21355) 4324292..4324525 - 234 WP_015899494.1 TIGR03758 family integrating conjugative element protein -
LJF45_RS21355 (LJF45_21360) 4324531..4324803 - 273 WP_001686573.1 RAQPRD family integrative conjugative element protein -
LJF45_RS21360 (LJF45_21365) 4325022..4325780 - 759 WP_010989289.1 TIGR03747 family integrating conjugative element membrane protein -
LJF45_RS21365 (LJF45_21370) 4325777..4327867 - 2091 WP_000071290.1 type IV conjugative transfer system coupling protein TraD -
LJF45_RS21370 (LJF45_21375) 4327887..4328456 - 570 WP_000626967.1 restriction endonuclease -
LJF45_RS21375 (LJF45_21380) 4328466..4328966 - 501 WP_000253629.1 integrating conjugative element protein -
LJF45_RS21380 (LJF45_21385) 4329002..4329688 - 687 WP_000013624.1 hypothetical protein VF
LJF45_RS21385 (LJF45_21390) 4329667..4330353 - 687 WP_223229647.1 TIGR03759 family integrating conjugative element protein -
LJF45_RS21390 (LJF45_21395) 4330426..4331340 - 915 WP_000214158.1 hypothetical protein -
LJF45_RS21395 (LJF45_21400) 4331297..4331659 - 363 WP_001149494.1 hypothetical protein -
LJF45_RS21400 (LJF45_21405) 4331847..4332722 - 876 WP_000994659.1 hypothetical protein -
LJF45_RS21405 (LJF45_21410) 4332934..4333401 - 468 WP_000455463.1 hypothetical protein -
LJF45_RS21410 (LJF45_21415) 4333498..4334649 - 1152 WP_000089603.1 Tyrosine recombinase XerC ; Integrase Integrase
LJF45_RS21415 (LJF45_21420) 4334997..4336304 - 1308 WP_000744276.1 hypothetical protein VF
LJF45_RS21420 (LJF45_21425) 4336301..4336963 - 663 WP_000218700.1 hypothetical protein VF
LJF45_RS21425 (LJF45_21430) 4336960..4337403 - 444 WP_223228896.1 hypothetical protein VF
LJF45_RS21430 (LJF45_21435) 4337446..4338042 - 597 WP_024131234.1 hypothetical protein VF
LJF45_RS21435 (LJF45_21440) 4338081..4339166 - 1086 WP_000074784.1 Toxin coregulated pilus biosynthesis protein E VF
LJF45_RS21440 (LJF45_21445) 4339163..4340878 - 1716 WP_001289222.1 Toxin coregulated pilus biosynthesis protein T VF
LJF45_RS21445 (LJF45_21450) 4340888..4341268 - 381 WP_014341558.1 hypothetical protein VF
LJF45_RS21450 (LJF45_21455) 4341456..4342742 - 1287 WP_000763621.1 hypothetical protein VF
LJF45_RS21455 (LJF45_21460) 4342744..4343082 - 339 WP_048657783.1 Outer membrane lipoprotein BfpB VF
LJF45_RS21460 (LJF45_21465) 4343048..4343983 - 936 WP_049783585.1 Outer membrane lipoprotein BfpB VF
LJF45_RS21465 (LJF45_21470) 4344454..4344873 - 420 WP_000539682.1 hypothetical protein VF
LJF45_RS21470 (LJF45_21475) 4344876..4346120 - 1245 WP_001095932.1 hypothetical protein VF
LJF45_RS21475 (LJF45_21480) 4346285..4347235 - 951 Protein_4196 Recombination-promoting nuclease RpnA VF
LJF45_RS21480 (LJF45_21485) 4347301..4347837 - 537 WP_000157067.1 single-stranded DNA-binding protein -
LJF45_RS21485 (LJF45_21490) 4347850..4348068 - 219 WP_000958171.1 hypothetical protein -
LJF45_RS21490 (LJF45_21495) 4348149..4348598 - 450 WP_000032521.1 STY4534 family ICE replication protein -
LJF45_RS21495 (LJF45_21500) 4349266..4351260 - 1995 WP_227761082.1 DNA topoisomerase III -
LJF45_RS21500 (LJF45_21505) 4351371..4352147 - 777 WP_001290445.1 TIGR03761 family integrating conjugative element protein -
LJF45_RS21505 (LJF45_21510) 4352736..4354046 - 1311 WP_001194350.1 STY4528 family pathogenicity island replication protein -
LJF45_RS21510 (LJF45_21515) 4354076..4354324 - 249 WP_000377625.1 hypothetical protein -
LJF45_RS21515 (LJF45_21520) 4354324..4354881 - 558 WP_000144322.1 DUF2857 domain-containing protein -
LJF45_RS21520 (LJF45_21525) 4354966..4355688 - 723 WP_001275616.1 DUF2786 domain-containing protein -
LJF45_RS21525 (LJF45_21530) 4355675..4355935 - 261 WP_000838568.1 hypothetical protein -
LJF45_RS21535 (LJF45_21540) 4356149..4357948 - 1800 WP_001029724.1 ParB family protein -
LJF45_RS21540 (LJF45_21545) 4357941..4359305 - 1365 WP_000018529.1 SPI-7-type island replicative DNA helicase -
LJF45_RS21545 (LJF45_21550) 4359302..4360336 - 1035 WP_001195363.1 Tyrosine-protein kinase CpsD VF
LJF45_RS21550 (LJF45_21555) 4360550..4360624 - 75 Protein_4210 helix-turn-helix domain-containing protein -
LJF45_RS21555 (LJF45_21560) 4361004..4361081 + 78 Protein_4211 porin family protein -
LJF45_RS21560 (LJF45_21565) 4361181..4361933 + 753 WP_001785756.1 non-specific acid phosphatase -
LJF45_RS21565 (LJF45_21570) 4362174..4362665 - 492 WP_000626103.1 GNAT family N-acetyltransferase -
LJF45_RS21570 (LJF45_21575) 4362662..4362955 - 294 WP_001110456.1 DUF1778 domain-containing protein -
LJF45_RS21575 (LJF45_21580) 4363272..4363494 + 223 Protein_4215 hypothetical protein -
LJF45_RS21580 (LJF45_21585) 4363760..4364635 + 876 WP_000921674.1 AraC family transcriptional regulator -
LJF45_RS21585 (LJF45_21590) 4364632..4364919 + 288 WP_001269916.1 transcriptional regulator RtsB -
LJF45_RS21590 (LJF45_21595) 4364942..4365158 + 217 Protein_4218 hypothetical protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance