MGE detailed information
MGE type: Conjugative plasmid MGE length: 88502 bp
Accession: NZ_CP085700 Location: 1..88502 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain S29 Replicon: plasmid pS29-IncI1
Accession: NZ_CP085700 Location: 1..88502 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain S29 Replicon: plasmid pS29-IncI1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJN59_RS24560 (1) | 1..1032 | + | 1032 | WP_024176529.1 | plasmid replication initiator RepA | - |
| LJN59_RS24565 (2102) | 2102..2611 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| LJN59_RS24570 (2667) | 2667..3269 | - | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| LJN59_RS24575 (3824) | 3824..5086 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| LJN59_RS24580 (5342) | 5342..6217 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| LJN59_RS24585 (6264) | 6264..6608 | - | 345 | Protein_5 | WbuC family cupin fold metalloprotein | - |
| LJN59_RS24590 (6551) | 6551..7945 | + | 1395 | WP_023150520.1 | protein YagA | - |
| LJN59_RS24595 (8444) | 8444..8746 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| LJN59_RS24600 (8743) | 8743..9369 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| LJN59_RS24605 (9549) | 9549..10820 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| LJN59_RS24610 (10820) | 10820..11257 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LJN59_RS24615 (11254) | 11254..11502 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| LJN59_RS24620 (11920) | 11920..12822 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| LJN59_RS24625 (12826) | 12826..12912 | + | 87 | Protein_13 | hypothetical protein | - |
| LJN59_RS24630 (12917) | 12917..13252 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| LJN59_RS24635 (13590) | 13590..14570 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| LJN59_RS24640 (14573) | 14573..14995 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| LJN59_RS24645 (14999) | 14999..15310 | + | 312 | WP_033863049.1 | hypothetical protein | - |
| LJN59_RS24650 (15386) | 15386..16069 | + | 684 | WP_000086127.1 | DNA methylase | - |
| LJN59_RS24655 (16070) | 16070..16291 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| LJN59_RS24660 (16221) | 16221..16739 | + | 519 | WP_223350510.1 | DUF1380 family protein | - |
| LJN59_RS24665 (16784) | 16784..17554 | + | 771 | WP_012783922.1 | hypothetical protein | - |
| LJN59_RS24670 (17967) | 17967..18392 | + | 426 | WP_001198889.1 | antirestriction protein | - |
| LJN59_RS24675 (18439) | 18439..18861 | + | 423 | WP_000271703.1 | DUF1380 family protein | - |
| LJN59_RS24680 (18858) | 18858..19049 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| LJN59_RS24685 (19328) | 19328..20995 | - | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| LJN59_RS24690 (22177) | 22177..22704 | + | 528 | WP_012783926.1 | single-stranded DNA-binding protein | - |
| LJN59_RS24695 (22762) | 22762..22995 | + | 234 | WP_015508350.1 | DUF905 domain-containing protein | - |
| LJN59_RS24700 (23054) | 23054..25012 | + | 1959 | WP_063267868.1 | ParB/RepB/Spo0J family partition protein | - |
| LJN59_RS24705 (25065) | 25065..25499 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| LJN59_RS24710 (25496) | 25496..26215 | + | 720 | WP_012783927.1 | plasmid SOS inhibition protein A | - |
| LJN59_RS24715 (26212) | 26212..26808 | + | 597 | WP_227697609.1 | hypothetical protein | - |
| LJN59_RS24720 (27270) | 27270..27770 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| LJN59_RS24725 (28499) | 28499..28933 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| LJN59_RS24730 (29027) | 29027..29293 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| LJN59_RS24735 (29470) | 29470..29859 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| LJN59_RS24740 (29856) | 29856..30758 | + | 903 | WP_023150544.1 | Recombination-promoting nuclease RpnA | VF |
| LJN59_RS24745 (30820) | 30820..31026 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| LJN59_RS24750 (31057) | 31057..31308 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| LJN59_RS24755 (31888) | 31888..32736 | + | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| LJN59_RS24760 (32822) | 32822..33157 | - | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| LJN59_RS24765 (33391) | 33391..33723 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| LJN59_RS24770 (33734) | 33734..36433 | + | 2700 | WP_012783930.1 | Protein TraI | Relaxase |
| LJN59_RS24775 (36470) | 36470..38761 | - | 2292 | WP_012783931.1 | F-type conjugative transfer protein TrbC | - |
| LJN59_RS24780 (38754) | 38754..39824 | - | 1071 | WP_012783932.1 | IncI1-type conjugal transfer protein TrbB | - |
| LJN59_RS24785 (39843) | 39843..41051 | - | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (41231) | 41231..41288 | - | 58 | NuclAT_1 | - | - |
| - (41231) | 41231..41288 | - | 58 | NuclAT_1 | - | - |
| - (41231) | 41231..41288 | - | 58 | NuclAT_1 | - | - |
| - (41231) | 41231..41288 | - | 58 | NuclAT_1 | - | - |
| LJN59_RS24790 (41358) | 41358..42443 | - | 1086 | WP_000080543.1 | protein finQ | - |
| - (42652) | 42652..42712 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (42652) | 42652..42712 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (42652) | 42652..42712 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (42652) | 42652..42712 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| LJN59_RS24795 (42764) | 42764..42916 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| LJN59_RS24800 (42988) | 42988..43239 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| LJN59_RS24805 (43539) | 43539..43835 | + | 297 | WP_011264046.1 | DinQ-like type I toxin DqlB | - |
| LJN59_RS24810 (43900) | 43900..44076 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| LJN59_RS24815 (44468) | 44468..44677 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| LJN59_RS24820 (44749) | 44749..45411 | - | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LJN59_RS24825 (45482) | 45482..47650 | - | 2169 | WP_015508354.1 | DotA/TraY family protein | - |
| LJN59_RS24830 (47747) | 47747..48331 | - | 585 | WP_012783937.1 | conjugal transfer protein TraX | - |
| LJN59_RS24835 (48360) | 48360..49562 | - | 1203 | WP_012783938.1 | IncI1-type conjugal transfer protein TraW | - |
| LJN59_RS24840 (49529) | 49529..50143 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| LJN59_RS24845 (50143) | 50143..53187 | - | 3045 | WP_012783939.1 | IncI1-type conjugal transfer protein TraU | - |
| LJN59_RS24850 (53277) | 53277..54077 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| LJN59_RS24855 (54061) | 54061..54249 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| LJN59_RS24860 (54313) | 54313..54717 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| LJN59_RS24865 (54768) | 54768..55295 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| LJN59_RS24870 (55295) | 55295..55999 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| LJN59_RS24875 (55999) | 55999..57288 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| LJN59_RS24880 (57291) | 57291..58274 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| LJN59_RS24885 (58285) | 58285..58977 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| LJN59_RS24890 (58974) | 58974..59321 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| LJN59_RS24895 (59339) | 59339..63106 | - | 3768 | WP_012783940.1 | DUF5710 domain-containing protein | - |
| LJN59_RS24900 (63196) | 63196..63747 | - | 552 | WP_012783942.1 | Phospholipase D | VF |
| LJN59_RS24905 (63762) | 63762..64052 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| LJN59_RS24910 (64049) | 64049..65197 | - | 1149 | WP_001024971.1 | putative protein YggR | VF |
| LJN59_RS24915 (65194) | 65194..66012 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| LJN59_RS24920 (66009) | 66009..66467 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| LJN59_RS24925 (66861) | 66861..67445 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| LJN59_RS24930 (67505) | 67505..68707 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| LJN59_RS24935 (68793) | 68793..69617 | - | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| LJN59_RS24940 (69768) | 69768..70922 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| LJN59_RS24945 (71942) | 71942..72190 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| LJN59_RS24950 (72187) | 72187..73479 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| LJN59_RS24955 (73479) | 73479..74135 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| LJN59_RS24960 (74120) | 74120..74680 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| LJN59_RS24965 (74690) | 74690..75304 | - | 615 | WP_001542527.1 | hypothetical protein | VF |
| LJN59_RS24970 (75322) | 75322..76419 | - | 1098 | WP_001492931.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| LJN59_RS24975 (76432) | 76432..77985 | - | 1554 | WP_001492932.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| LJN59_RS24980 (77996) | 77996..78448 | - | 453 | WP_012783945.1 | hypothetical protein | VF |
| LJN59_RS24985 (78435) | 78435..79730 | - | 1296 | WP_012783946.1 | type 4b pilus protein PilO2 | - |
| LJN59_RS24990 (79723) | 79723..81405 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| LJN59_RS24995 (81419) | 81419..81856 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| LJN59_RS25000 (81856) | 81856..82923 | - | 1068 | WP_012783947.1 | hypothetical protein | VF |
| LJN59_RS25005 (83547) | 83547..83843 | - | 297 | WP_000494780.1 | hypothetical protein | - |
| LJN59_RS25010 (84010) | 84010..84264 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| LJN59_RS25015 (84426) | 84426..84977 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| LJN59_RS25020 (85150) | 85150..85833 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| LJN59_RS25025 (86087) | 86087..86620 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| LJN59_RS25030 (87062) | 87062..87349 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| LJN59_RS25035 (87387) | 87387..87545 | - | 159 | Protein_95 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|