MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 106219 bp
Accession: NZ_CP085633 Location: 1130887..1237105 Organism: Pectobacterium brasiliense strain TS20HJ1 Replicon: chromosome
Accession: NZ_CP085633 Location: 1130887..1237105 Organism: Pectobacterium brasiliense strain TS20HJ1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJQ72_RS04990 (LJQ72_04990) | 1127911..1129557 | + | 1647 | WP_227527814.1 | multidrug ABC transporter permease/ATP-binding protein | - |
| LJQ72_RS04995 (LJQ72_04995) | 1129773..1130813 | + | 1041 | WP_227528265.1 | type II asparaginase | - |
| LJQ72_RS05005 (LJQ72_05005) | 1132546..1133067 | + | 522 | WP_014914494.1 | shikimate kinase AroL | - |
| LJQ72_RS05010 (LJQ72_05010) | 1133207..1133491 | + | 285 | WP_005975968.1 | pyrimidine/purine nucleoside phosphorylase | - |
| LJQ72_RS05015 (LJQ72_05015) | 1133754..1135034 | + | 1281 | WP_227527815.1 | nucleoside permease | - |
| LJQ72_RS05020 (LJQ72_05020) | 1135031..1136032 | + | 1002 | WP_109411819.1 | ADP-ribosylglycohydrolase family protein | - |
| LJQ72_RS05025 (LJQ72_05025) | 1136032..1137009 | + | 978 | WP_227527816.1 | PfkB family carbohydrate kinase | - |
| LJQ72_RS05030 (LJQ72_05030) | 1136983..1137729 | - | 747 | WP_010281787.1 | GntR family transcriptional regulator | - |
| LJQ72_RS05035 (LJQ72_05035) | 1138266..1140056 | + | 1791 | WP_039497326.1 | hypothetical protein | VF |
| LJQ72_RS05040 (LJQ72_05040) | 1140117..1141046 | - | 930 | WP_010281791.1 | recombination-associated protein RdgC | - |
| LJQ72_RS05045 (LJQ72_05045) | 1141334..1142245 | + | 912 | WP_205546129.1 | fructokinase | - |
| LJQ72_RS05050 (LJQ72_05050) | 1142249..1145932 | - | 3684 | WP_227527817.1 | SbcC/MukB-like Walker B domain-containing protein | - |
| LJQ72_RS05055 (LJQ72_05055) | 1145929..1147155 | - | 1227 | WP_227528266.1 | exonuclease subunit SbcD | - |
| LJQ72_RS05060 (LJQ72_05060) | 1147450..1148139 | + | 690 | WP_005975981.1 | Regulator of RpoS | VF |
| LJQ72_RS05065 (LJQ72_05065) | 1148167..1149489 | + | 1323 | WP_039275418.1 | Adaptive-response sensory-kinase SasA | VF |
| LJQ72_RS05070 (LJQ72_05070) | 1149505..1150443 | + | 939 | WP_227527818.1 | phosphate ABC transporter substrate-binding protein | - |
| LJQ72_RS05075 (LJQ72_05075) | 1150686..1151792 | + | 1107 | WP_039275420.1 | cobalamin-independent methionine synthase II family protein | - |
| LJQ72_RS05080 (LJQ72_05080) | 1152269..1153588 | + | 1320 | WP_039525215.1 | branched-chain amino acid transport system II carrier protein | - |
| LJQ72_RS05085 (LJQ72_05085) | 1153730..1155106 | + | 1377 | WP_227527819.1 | proline-specific permease ProY | - |
| LJQ72_RS05090 (LJQ72_05090) | 1155273..1156547 | - | 1275 | WP_110163869.1 | mechanosensitive ion channel | - |
| LJQ72_RS05095 (LJQ72_05095) | 1156771..1157373 | - | 603 | WP_010299049.1 | peroxiredoxin C | - |
| LJQ72_RS05100 (LJQ72_05100) | 1157585..1158166 | - | 582 | WP_039274427.1 | ACP phosphodiesterase | - |
| LJQ72_RS05105 (LJQ72_05105) | 1158298..1159365 | + | 1068 | WP_227527820.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| LJQ72_RS05110 (LJQ72_05110) | 1159462..1160607 | + | 1146 | WP_014914511.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| LJQ72_RS05115 (LJQ72_05115) | 1160734..1161066 | + | 333 | WP_010282033.1 | preprotein translocase subunit YajC | - |
| LJQ72_RS05120 (LJQ72_05120) | 1161094..1162941 | + | 1848 | WP_071822569.1 | protein translocase subunit SecD | - |
| LJQ72_RS05125 (LJQ72_05125) | 1163014..1163925 | + | 912 | WP_052439358.1 | protein translocase subunit SecF | - |
| LJQ72_RS05130 (LJQ72_05130) | 1163998..1164567 | - | 570 | WP_205537298.1 | DUF3251 domain-containing protein | - |
| LJQ72_RS05135 (LJQ72_05135) | 1164787..1165236 | + | 450 | WP_010282042.1 | transcriptional regulator NrdR | - |
| LJQ72_RS05140 (LJQ72_05140) | 1165272..1166408 | + | 1137 | WP_227527821.1 | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD | - |
| LJQ72_RS05145 (LJQ72_05145) | 1166519..1166995 | + | 477 | WP_012773708.1 | 6,7-dimethyl-8-ribityllumazine synthase | - |
| LJQ72_RS05150 (LJQ72_05150) | 1167020..1167439 | + | 420 | WP_014914514.1 | transcription antitermination factor NusB | - |
| LJQ72_RS05155 (LJQ72_05155) | 1167508..1168488 | + | 981 | WP_040036029.1 | thiamine-phosphate kinase | - |
| LJQ72_RS05160 (LJQ72_05160) | 1168463..1168999 | + | 537 | WP_039274457.1 | phosphatidylglycerophosphatase A | - |
| LJQ72_RS05165 (LJQ72_05165) | 1169068..1170933 | - | 1866 | WP_180786188.1 | 1-deoxy-D-xylulose-5-phosphate synthase | - |
| LJQ72_RS05170 (LJQ72_05170) | 1170952..1171863 | - | 912 | WP_180787860.1 | (2E,6E)-farnesyl diphosphate synthase | - |
| LJQ72_RS05175 (LJQ72_05175) | 1171860..1172108 | - | 249 | WP_010282080.1 | exodeoxyribonuclease VII small subunit | - |
| LJQ72_RS05180 (LJQ72_05180) | 1172361..1173809 | + | 1449 | WP_014914518.1 | tRNA uracil 4-sulfurtransferase ThiI | - |
| LJQ72_RS05185 (LJQ72_05185) | 1174027..1174617 | - | 591 | WP_010282087.1 | protein deglycase YajL | - |
| LJQ72_RS05190 (LJQ72_05190) | 1174580..1175488 | - | 909 | WP_039466867.1 | 2-dehydropantoate 2-reductase | - |
| LJQ72_RS05195 (LJQ72_05195) | 1175677..1176168 | + | 492 | WP_014914521.1 | YajQ family cyclic di-GMP-binding protein | - |
| LJQ72_RS05200 (LJQ72_05200) | 1176224..1177588 | - | 1365 | WP_227527822.1 | Aminodeoxyfutalosine nucleosidase | VF |
| LJQ72_RS05205 (LJQ72_05205) | 1177827..1178717 | - | 891 | WP_010282097.1 | heme o synthase | - |
| LJQ72_RS05210 (LJQ72_05210) | 1178732..1179064 | - | 333 | WP_015839339.1 | cytochrome o ubiquinol oxidase subunit IV | - |
| LJQ72_RS05215 (LJQ72_05215) | 1179064..1179678 | - | 615 | WP_227527823.1 | cytochrome o ubiquinol oxidase subunit III | - |
| LJQ72_RS05220 (LJQ72_05220) | 1179668..1181659 | - | 1992 | WP_014914525.1 | cytochrome o ubiquinol oxidase subunit I | - |
| LJQ72_RS05225 (LJQ72_05225) | 1181664..1182626 | - | 963 | WP_039529536.1 | cytochrome o ubiquinol oxidase subunit II | - |
| LJQ72_RS05230 (LJQ72_05230) | 1183052..1184539 | - | 1488 | WP_227527824.1 | muropeptide MFS transporter AmpG | - |
| LJQ72_RS05235 (LJQ72_05235) | 1184599..1185177 | - | 579 | WP_039274486.1 | lipoprotein | - |
| LJQ72_RS05240 (LJQ72_05240) | 1185503..1185817 | + | 315 | WP_227527825.1 | transcriptional regulator BolA | - |
| LJQ72_RS05245 (LJQ72_05245) | 1186132..1187436 | + | 1305 | WP_039499029.1 | trigger factor | - |
| LJQ72_RS05250 (LJQ72_05250) | 1187971..1188594 | + | 624 | WP_010282141.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| LJQ72_RS05255 (LJQ72_05255) | 1188758..1190032 | + | 1275 | WP_010282142.1 | ATP-dependent protease ATP-binding subunit ClpX | - |
| LJQ72_RS05260 (LJQ72_05260) | 1190225..1192606 | + | 2382 | WP_010282144.1 | endopeptidase La | - |
| LJQ72_RS05265 (LJQ72_05265) | 1192804..1193076 | + | 273 | WP_005976031.1 | nucleoid-associated protein HU-beta | - |
| LJQ72_RS05270 (LJQ72_05270) | 1193345..1195225 | + | 1881 | WP_039502895.1 | Foldase protein PrsA | VF |
| LJQ72_RS05275 (LJQ72_05275) | 1195364..1195729 | + | 366 | WP_014914531.1 | helix-hairpin-helix domain-containing protein | - |
| LJQ72_RS05280 (LJQ72_05280) | 1195835..1196233 | + | 399 | WP_014914532.1 | YbgC/FadM family acyl-CoA thioesterase | - |
| LJQ72_RS05285 (LJQ72_05285) | 1196330..1197025 | - | 696 | WP_010282163.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| LJQ72_RS05290 (LJQ72_05290) | 1197189..1198268 | - | 1080 | WP_227528267.1 | PLP-dependent cysteine synthase family protein | - |
| LJQ72_RS05295 (LJQ72_05295) | 1198635..1199096 | + | 462 | WP_005976040.1 | Lrp/AsnC family transcriptional regulator | - |
| LJQ72_RS05300 (LJQ72_05300) | 1199300..1201069 | + | 1770 | WP_227527826.1 | Cysteine synthase | VF |
| LJQ72_RS05305 (LJQ72_05305) | 1201062..1202840 | + | 1779 | WP_227527827.1 | SmdB family multidrug efflux ABC transporter permease/ATP-binding protein | - |
| LJQ72_RS05310 (LJQ72_05310) | 1203201..1203539 | + | 339 | WP_002208627.1 | P-II family nitrogen regulator | - |
| LJQ72_RS05315 (LJQ72_05315) | 1203579..1204865 | + | 1287 | WP_227527828.1 | ammonium transporter AmtB | - |
| LJQ72_RS05320 (LJQ72_05320) | 1205007..1205870 | - | 864 | WP_014914538.1 | acyl-CoA thioesterase II | - |
| LJQ72_RS05325 (LJQ72_05325) | 1206083..1206664 | + | 582 | WP_039284224.1 | YbaY family lipoprotein | - |
| LJQ72_RS05330 (LJQ72_05330) | 1206684..1207004 | - | 321 | WP_010282239.1 | MGMT family protein | - |
| LJQ72_RS05340 (LJQ72_05340) | 1207870..1208073 | - | 204 | WP_005976087.1 | HHA domain-containing protein | Toxin Detail |
| LJQ72_RS05345 (LJQ72_05345) | 1208127..1208495 | - | 369 | WP_010282247.1 | Hha toxicity modulator TomB | Antitoxin Detail |
| LJQ72_RS05350 (LJQ72_05350) | 1209094..1209237 | - | 144 | WP_005976091.1 | type B 50S ribosomal protein L36 | - |
| LJQ72_RS05355 (LJQ72_05355) | 1209255..1209503 | - | 249 | WP_039274617.1 | type B 50S ribosomal protein L31 | - |
| LJQ72_RS05360 (LJQ72_05360) | 1209736..1212864 | - | 3129 | WP_039466835.1 | Threonine--tRNA ligase 2 | VF |
| LJQ72_RS05365 (LJQ72_05365) | 1212893..1214086 | - | 1194 | WP_014914544.1 | Translation initiation factor IF-3 | VF |
| LJQ72_RS05370 (LJQ72_05370) | 1214251..1214892 | + | 642 | WP_014914545.1 | 50S ribosomal protein L35 | VF |
| LJQ72_RS05375 (LJQ72_05375) | 1214949..1215119 | - | 171 | WP_227527829.1 | pleiotropic regulatory protein RsmS | - |
| LJQ72_RS05380 (LJQ72_05380) | 1215157..1215693 | - | 537 | WP_039502904.1 | primosomal replication protein | - |
| LJQ72_RS05385 (LJQ72_05385) | 1215902..1216297 | + | 396 | WP_039551575.1 | DUF454 family protein | - |
| LJQ72_RS05390 (LJQ72_05390) | 1216515..1217069 | + | 555 | WP_010286238.1 | adenine phosphoribosyltransferase | - |
| LJQ72_RS05395 (LJQ72_05395) | 1217144..1219216 | + | 2073 | WP_227527830.1 | DNA polymerase III subunit gamma/tau | - |
| LJQ72_RS05400 (LJQ72_05400) | 1219257..1219586 | + | 330 | WP_010286242.1 | YbaB/EbfC family nucleoid-associated protein | - |
| LJQ72_RS05405 (LJQ72_05405) | 1219586..1220191 | + | 606 | WP_014914551.1 | recombination mediator RecR | - |
| LJQ72_RS05410 (LJQ72_05410) | 1220372..1222255 | + | 1884 | WP_201722907.1 | molecular chaperone HtpG | - |
| LJQ72_RS05415 (LJQ72_05415) | 1222519..1223163 | + | 645 | WP_010286252.1 | adenylate kinase | - |
| LJQ72_RS05420 (LJQ72_05420) | 1223511..1224473 | + | 963 | WP_039511043.1 | ferrochelatase | - |
| LJQ72_RS05425 (LJQ72_05425) | 1224577..1226262 | - | 1686 | WP_014914554.1 | YbaL family putative K(+) efflux transporter | - |
| LJQ72_RS05430 (LJQ72_05430) | 1226931..1228580 | + | 1650 | WP_039499043.1 | Lactate utilization protein A | VF |
| LJQ72_RS05435 (LJQ72_05435) | 1229079..1229801 | + | 723 | WP_131590882.1 | hypothetical protein | - |
| LJQ72_RS05440 (LJQ72_05440) | 1230271..1232289 | + | 2019 | WP_227527831.1 | discoidin domain-containing protein | - |
| LJQ72_RS05445 (LJQ72_05445) | 1232454..1234445 | + | 1992 | WP_227527832.1 | discoidin domain-containing protein | - |
| LJQ72_RS05450 (LJQ72_05450) | 1234611..1235864 | + | 1254 | Protein_1058 | discoidin domain-containing protein | - |
| LJQ72_RS05455 (LJQ72_05455) | 1235955..1237105 | + | 1151 | WP_227526959.1 | IS3 family transposase ISEal1 | Transposase |
| LJQ72_RS05460 (LJQ72_05460) | 1237139..1237867 | + | 729 | Protein_1060 | hypothetical protein | - |
| LJQ72_RS05465 (LJQ72_05465) | 1238008..1238199 | + | 192 | WP_205532008.1 | hypothetical protein | - |
| LJQ72_RS05470 (LJQ72_05470) | 1238320..1240458 | + | 2139 | WP_205604586.1 | SGNH/GDSL hydrolase family protein | - |
| LJQ72_RS05475 (LJQ72_05475) | 1240556..1240849 | + | 294 | Protein_1063 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|