MGE detailed information
MGE type: Conjugative plasmid MGE length: 88542 bp
Accession: NZ_CP085621 Location: 1..88542 Organism: Escherichia coli strain EC32 Replicon: plasmid pEC32-IncI1
Accession: NZ_CP085621 Location: 1..88542 Organism: Escherichia coli strain EC32 Replicon: plasmid pEC32-IncI1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJN50_RS24665 (1) | 1..1032 | + | 1032 | WP_024176529.1 | plasmid replication initiator RepA | - |
| LJN50_RS24670 (1729) | 1729..1869 | + | 141 | WP_032072206.1 | hypothetical protein | - |
| LJN50_RS24675 (2102) | 2102..2611 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| LJN50_RS24680 (2667) | 2667..3269 | - | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| LJN50_RS24685 (3824) | 3824..5086 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| LJN50_RS24690 (5342) | 5342..6217 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| LJN50_RS24695 (6264) | 6264..6608 | - | 345 | Protein_6 | WbuC family cupin fold metalloprotein | - |
| LJN50_RS24700 (6551) | 6551..7945 | + | 1395 | WP_023150520.1 | protein YagA | - |
| LJN50_RS24705 (8468) | 8468..8770 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| LJN50_RS24710 (8767) | 8767..9393 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| LJN50_RS24715 (9589) | 9589..10860 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| LJN50_RS24720 (10860) | 10860..11297 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LJN50_RS24725 (11294) | 11294..11542 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| LJN50_RS24730 (11960) | 11960..12862 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| LJN50_RS24735 (12866) | 12866..12952 | + | 87 | Protein_14 | hypothetical protein | - |
| LJN50_RS24740 (12957) | 12957..13292 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| LJN50_RS24745 (13630) | 13630..14610 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| LJN50_RS24750 (14613) | 14613..15035 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| LJN50_RS24755 (15039) | 15039..15350 | + | 312 | WP_033863049.1 | hypothetical protein | - |
| LJN50_RS24760 (15426) | 15426..16109 | + | 684 | WP_000086127.1 | DNA methylase | - |
| LJN50_RS24765 (16110) | 16110..16331 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| LJN50_RS24770 (16261) | 16261..16779 | + | 519 | WP_223350510.1 | DUF1380 family protein | - |
| LJN50_RS24775 (16824) | 16824..17594 | + | 771 | WP_012783922.1 | hypothetical protein | - |
| LJN50_RS24780 (18007) | 18007..18432 | + | 426 | WP_001198889.1 | antirestriction protein | - |
| LJN50_RS24785 (18479) | 18479..18901 | + | 423 | WP_000271703.1 | DUF1380 family protein | - |
| LJN50_RS24790 (18898) | 18898..19089 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| LJN50_RS24795 (19368) | 19368..21035 | - | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| LJN50_RS24800 (22217) | 22217..22744 | + | 528 | WP_012783926.1 | single-stranded DNA-binding protein | - |
| LJN50_RS24805 (22802) | 22802..23035 | + | 234 | WP_015508350.1 | DUF905 domain-containing protein | - |
| LJN50_RS24810 (23094) | 23094..25052 | + | 1959 | WP_063267868.1 | ParB/RepB/Spo0J family partition protein | - |
| LJN50_RS24815 (25105) | 25105..25539 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| LJN50_RS24820 (25536) | 25536..26255 | + | 720 | WP_012783927.1 | plasmid SOS inhibition protein A | - |
| LJN50_RS24825 (26252) | 26252..26848 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| LJN50_RS24830 (27310) | 27310..27810 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| LJN50_RS24835 (28539) | 28539..28973 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| LJN50_RS24840 (29067) | 29067..29333 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| LJN50_RS24845 (29510) | 29510..29899 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| LJN50_RS24850 (29896) | 29896..30798 | + | 903 | WP_023150544.1 | Recombination-promoting nuclease RpnA | VF |
| LJN50_RS24855 (30860) | 30860..31066 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| LJN50_RS24860 (31097) | 31097..31348 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| LJN50_RS24865 (31928) | 31928..32776 | + | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| LJN50_RS24870 (32862) | 32862..33197 | - | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| LJN50_RS24875 (33431) | 33431..33763 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| LJN50_RS24880 (33774) | 33774..36473 | + | 2700 | WP_012783930.1 | Protein TraI | Relaxase |
| LJN50_RS24885 (36510) | 36510..38801 | - | 2292 | WP_012783931.1 | F-type conjugative transfer protein TrbC | - |
| LJN50_RS24890 (38794) | 38794..39864 | - | 1071 | WP_012783932.1 | IncI1-type conjugal transfer protein TrbB | - |
| LJN50_RS24895 (39883) | 39883..41091 | - | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (41271) | 41271..41328 | - | 58 | NuclAT_1 | - | - |
| - (41271) | 41271..41328 | - | 58 | NuclAT_1 | - | - |
| - (41271) | 41271..41328 | - | 58 | NuclAT_1 | - | - |
| - (41271) | 41271..41328 | - | 58 | NuclAT_1 | - | - |
| LJN50_RS24900 (41398) | 41398..42483 | - | 1086 | WP_000080543.1 | protein finQ | - |
| - (42692) | 42692..42752 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (42692) | 42692..42752 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (42692) | 42692..42752 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (42692) | 42692..42752 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| LJN50_RS24905 (42804) | 42804..42956 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| LJN50_RS24910 (43028) | 43028..43279 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| LJN50_RS24915 (43579) | 43579..43875 | + | 297 | WP_011264046.1 | DinQ-like type I toxin DqlB | - |
| LJN50_RS24920 (43940) | 43940..44116 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| LJN50_RS24925 (44508) | 44508..44717 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| LJN50_RS24930 (44789) | 44789..45451 | - | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LJN50_RS24935 (45522) | 45522..47690 | - | 2169 | WP_015508354.1 | DotA/TraY family protein | - |
| LJN50_RS24940 (47787) | 47787..48371 | - | 585 | WP_012783937.1 | conjugal transfer protein TraX | - |
| LJN50_RS24945 (48400) | 48400..49602 | - | 1203 | WP_012783938.1 | IncI1-type conjugal transfer protein TraW | - |
| LJN50_RS24950 (49569) | 49569..50183 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| LJN50_RS24955 (50183) | 50183..53227 | - | 3045 | WP_012783939.1 | IncI1-type conjugal transfer protein TraU | - |
| LJN50_RS24960 (53317) | 53317..54117 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| LJN50_RS24965 (54101) | 54101..54289 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| LJN50_RS24970 (54353) | 54353..54757 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| LJN50_RS24975 (54808) | 54808..55335 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| LJN50_RS24980 (55335) | 55335..56039 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| LJN50_RS24985 (56039) | 56039..57328 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| LJN50_RS24990 (57331) | 57331..58314 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| LJN50_RS24995 (58325) | 58325..59017 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| LJN50_RS25000 (59014) | 59014..59361 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| LJN50_RS25005 (59379) | 59379..63146 | - | 3768 | WP_012783940.1 | DUF5710 domain-containing protein | - |
| LJN50_RS25010 (63236) | 63236..63787 | - | 552 | WP_012783942.1 | Phospholipase D | VF |
| LJN50_RS25015 (63802) | 63802..64092 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| LJN50_RS25020 (64089) | 64089..65237 | - | 1149 | WP_001024971.1 | putative protein YggR | VF |
| LJN50_RS25025 (65234) | 65234..66052 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| LJN50_RS25030 (66049) | 66049..66507 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| LJN50_RS25035 (66901) | 66901..67485 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| LJN50_RS25040 (67545) | 67545..68747 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| LJN50_RS25045 (68833) | 68833..69657 | - | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| LJN50_RS25050 (69808) | 69808..70962 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| LJN50_RS25055 (70961) | 70961..71314 | + | 354 | WP_001393368.1 | hypothetical protein | - |
| LJN50_RS25060 (71982) | 71982..72230 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| LJN50_RS25065 (72227) | 72227..73519 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| LJN50_RS25070 (73519) | 73519..74175 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| LJN50_RS25075 (74160) | 74160..74720 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| LJN50_RS25080 (74730) | 74730..75344 | - | 615 | WP_001542527.1 | hypothetical protein | VF |
| LJN50_RS25085 (75362) | 75362..76459 | - | 1098 | WP_001492931.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| LJN50_RS25090 (76472) | 76472..78025 | - | 1554 | WP_001492932.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| LJN50_RS25095 (78036) | 78036..78488 | - | 453 | WP_012783945.1 | hypothetical protein | VF |
| LJN50_RS25100 (78475) | 78475..79770 | - | 1296 | WP_012783946.1 | type 4b pilus protein PilO2 | - |
| LJN50_RS25105 (79763) | 79763..81445 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| LJN50_RS25110 (81459) | 81459..81896 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| LJN50_RS25115 (81896) | 81896..82963 | - | 1068 | WP_012783947.1 | hypothetical protein | VF |
| LJN50_RS25120 (83587) | 83587..83883 | - | 297 | WP_000494780.1 | hypothetical protein | - |
| LJN50_RS25125 (84050) | 84050..84304 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| LJN50_RS25130 (84466) | 84466..85017 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| LJN50_RS25135 (85190) | 85190..85873 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| LJN50_RS25140 (86127) | 86127..86660 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| LJN50_RS25145 (87102) | 87102..87389 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| LJN50_RS25150 (87427) | 87427..87585 | - | 159 | Protein_97 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|