MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93120 bp
Accession: NZ_CP085190 Location: 1..93120 Organism: Escherichia coli strain EC195 Replicon: plasmid pEC195-93k
Accession: NZ_CP085190 Location: 1..93120 Organism: Escherichia coli strain EC195 Replicon: plasmid pEC195-93k
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LIN52_RS25120 (1) | 1..978 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| LIN52_RS25125 (1263) | 1263..2003 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| LIN52_RS25130 (2124) | 2124..2306 | - | 183 | WP_042065278.1 | hypothetical protein | - |
| LIN52_RS25135 (2373) | 2373..2662 | - | 290 | Protein_3 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LIN52_RS25140 (2649) | 2649..2917 | - | 269 | Protein_4 | type II toxin-antitoxin system ParD family antitoxin | - |
| LIN52_RS25145 (3449) | 3449..4321 | + | 873 | WP_104989445.1 | hypothetical protein | - |
| LIN52_RS25150 (4355) | 4355..5052 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| LIN52_RS25155 (5068) | 5068..5187 | + | 120 | Protein_7 | transcriptional regulator | - |
| LIN52_RS25160 (5165) | 5165..5788 | - | 624 | WP_000088605.1 | hypothetical protein | VF |
| LIN52_RS25165 (5870) | 5870..7075 | + | 1206 | WP_001089068.1 | Multidrug resistance protein MdtG | ARG |
| LIN52_RS25170 (7188) | 7188..7781 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| LIN52_RS25175 (7915) | 7915..8619 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| LIN52_RS25180 (8673) | 8673..9038 | - | 366 | Protein_12 | chromate transporter | - |
| LIN52_RS25185 (9194) | 9194..9397 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| LIN52_RS25190 (9525) | 9525..10364 | - | 840 | WP_000259031.1 | hypothetical protein | ARG |
| LIN52_RS25195 (10358) | 10358..10705 | - | 348 | WP_000679427.1 | Spermidine export protein MdtJ | ARG |
| LIN52_RS25200 (10822) | 10822..11660 | - | 839 | Protein_16 | hypothetical protein | ARG |
| LIN52_RS25205 (11666) | 11666..11956 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| LIN52_RS25210 (12068) | 12068..12565 | - | 498 | WP_001083725.1 | hypothetical protein | ARG |
| LIN52_RS25215 (12710) | 12710..13576 | + | 867 | Protein_19 | IS91 family transposase ISAzo26 | Transposase |
| LIN52_RS25220 (13631) | 13631..14335 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LIN52_RS25225 (14500) | 14500..14793 | + | 294 | Protein_21 | IS30 family transposase | - |
| LIN52_RS25230 (14894) | 14894..15706 | + | 813 | WP_023408309.1 | hypothetical protein | ARG |
| LIN52_RS25235 (15710) | 15710..16075 | + | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
| LIN52_RS25240 (16080) | 16080..16718 | + | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
| LIN52_RS25245 (16729) | 16729..17286 | - | 558 | Protein_25 | twin-arginine translocation (TAT) pathway signal sequence domain protein | - |
| LIN52_RS25250 (17386) | 17386..17760 | - | 375 | Protein_26 | protein-disulfide reductase DsbD family protein | - |
| LIN52_RS25255 (18073) | 18073..19614 | - | 1542 | WP_000050481.1 | IS91 family transposase ISVsa3 | Transposase |
| LIN52_RS25260 (20019) | 20019..20858 | - | 840 | WP_000259031.1 | hypothetical protein | ARG |
| LIN52_RS25265 (20852) | 20852..21199 | - | 348 | WP_000679427.1 | Spermidine export protein MdtJ | ARG |
| LIN52_RS25270 (21405) | 21405..22193 | - | 789 | WP_000503573.1 | hypothetical protein | ARG |
| LIN52_RS25275 (22324) | 22324..22797 | - | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| LIN52_RS25280 (22955) | 22955..23968 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| LIN52_RS25285 (24171) | 24171..24479 | + | 309 | Protein_33 | EAL domain-containing protein | - |
| LIN52_RS25290 (24370) | 24370..25074 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LIN52_RS25295 (25233) | 25233..25514 | - | 282 | Protein_35 | IS91 family transposase ISPps1 | Transposase |
| LIN52_RS25300 (25661) | 25661..26521 | - | 861 | WP_000027057.1 | hypothetical protein | ARG |
| LIN52_RS25305 (26704) | 26704..26895 | - | 192 | Protein_37 | helix-turn-helix domain-containing protein | - |
| LIN52_RS25310 (26959) | 26959..27663 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| LIN52_RS25315 (27718) | 27718..28563 | - | 846 | Protein_39 | IS4 family transposase IS10R | Transposase |
| LIN52_RS25320 (28673) | 28673..29635 | - | 963 | Protein_40 | IS4 family transposase IS10R | Transposase |
| LIN52_RS25325 (29778) | 29778..30638 | + | 861 | WP_000557454.1 | hypothetical protein | ARG |
| LIN52_RS25330 (30651) | 30651..31193 | + | 543 | WP_000587837.1 | AAA family ATPase | - |
| LIN52_RS25335 (31675) | 31675..31866 | - | 192 | WP_000951934.1 | hypothetical protein | - |
| LIN52_RS25340 (31890) | 31890..32117 | + | 228 | WP_000248278.1 | hypothetical protein | - |
| LIN52_RS25345 (32168) | 32168..33295 | + | 1128 | WP_014837927.1 | DUF3883 domain-containing protein | - |
| LIN52_RS25350 (33332) | 33332..34036 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LIN52_RS25355 (34158) | 34158..35072 | + | 915 | WP_023063803.1 | hypothetical protein | ARG |
| LIN52_RS25360 (35069) | 35069..36307 | + | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| LIN52_RS25365 (36307) | 36307..36891 | + | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| LIN52_RS25370 (37384) | 37384..38148 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| LIN52_RS25375 (38288) | 38288..38992 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LIN52_RS25380 (39053) | 39053..39889 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| LIN52_RS25385 (39889) | 39889..40692 | - | 804 | WP_001082319.1 | hypothetical protein | ARG |
| LIN52_RS25390 (40753) | 40753..41568 | - | 816 | WP_001043265.1 | hypothetical protein | ARG |
| LIN52_RS25395 (41877) | 41877..42728 | - | 852 | WP_000240536.1 | replication protein C, IncQ-type | - |
| LIN52_RS25400 (42715) | 42715..43434 | - | 720 | Protein_56 | helicase RepA family protein | - |
| LIN52_RS25405 (43484) | 43484..44188 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LIN52_RS25410 (44260) | 44260..46596 | + | 2337 | Protein_58 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| LIN52_RS25415 (46733) | 46733..47134 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| LIN52_RS25420 (47067) | 47067..47324 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| LIN52_RS25425 (47417) | 47417..48070 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| LIN52_RS25430 (49010) | 49010..49867 | - | 858 | WP_000130640.1 | incFII family plasmid replication initiator RepA | - |
| LIN52_RS25435 (49860) | 49860..49934 | - | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| LIN52_RS25440 (49934) | 49934..50065 | - | 132 | Protein_64 | protein CopA/IncA | - |
| LIN52_RS25445 (50296) | 50296..51837 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| LIN52_RS25450 (51852) | 51852..52598 | + | 747 | WP_053906593.1 | IS21 family transposase ISEc12 | Transposase |
| LIN52_RS25455 (52758) | 52758..53012 | - | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
| LIN52_RS25460 (53309) | 53309..53443 | - | 135 | WP_023144756.1 | Hok/Gef family protein | Toxin Detail |
| - (53488) | 53488..53548 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (53488) | 53488..53548 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (53488) | 53488..53548 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (53488) | 53488..53548 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| LIN52_RS25465 (53515) | 53515..53801 | - | 287 | Protein_69 | DUF2726 domain-containing protein | - |
| LIN52_RS25470 (54314) | 54314..54526 | - | 213 | WP_013023861.1 | hypothetical protein | - |
| LIN52_RS25475 (54657) | 54657..55217 | - | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| LIN52_RS25480 (55272) | 55272..56018 | - | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| LIN52_RS25485 (56038) | 56038..58431 | - | 2394 | Protein_73 | ATP-dependent RecD-like DNA helicase | Relaxase |
| LIN52_RS25490 (58425) | 58425..59483 | - | 1059 | Protein_74 | DUF3560 domain-containing protein | - |
| LIN52_RS25495 (59535) | 59535..59765 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| LIN52_RS25500 (60800) | 60800..60991 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| LIN52_RS25505 (60988) | 60988..61409 | - | 422 | Protein_77 | DUF1380 domain-containing protein | - |
| LIN52_RS25510 (61456) | 61456..61881 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| LIN52_RS25515 (62298) | 62298..63074 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| LIN52_RS25520 (63125) | 63125..63643 | - | 519 | WP_123325260.1 | DUF1380 family protein | - |
| LIN52_RS25525 (63573) | 63573..63794 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| LIN52_RS25530 (63795) | 63795..64478 | - | 684 | WP_000086185.1 | DNA methylase | - |
| LIN52_RS25535 (64555) | 64555..64866 | - | 312 | WP_011254640.1 | hypothetical protein | - |
| LIN52_RS25540 (64863) | 64863..65765 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| LIN52_RS25545 (66632) | 66632..67603 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| LIN52_RS25550 (67603) | 67603..68769 | - | 1167 | WP_000772446.1 | hypothetical protein | VF |
| LIN52_RS25555 (69357) | 69357..70112 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| LIN52_RS25560 (70886) | 70886..71692 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| LIN52_RS25565 (71693) | 71693..71998 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| LIN52_RS25570 (72000) | 72000..72218 | - | 219 | WP_023909027.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| LIN52_RS25575 (72852) | 72852..73049 | + | 198 | WP_000215657.1 | hypothetical protein | - |
| LIN52_RS25580 (73046) | 73046..73330 | - | 285 | WP_000642771.1 | hypothetical protein | - |
| LIN52_RS25585 (73350) | 73350..74483 | - | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| LIN52_RS25590 (74746) | 74746..77865 | - | 3120 | WP_023909028.1 | hypothetical protein | - |
| LIN52_RS25595 (78172) | 78172..78402 | + | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| LIN52_RS25600 (78399) | 78399..78815 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LIN52_RS25605 (78977) | 78977..81115 | - | 2139 | WP_000350635.1 | AAA family ATPase | - |
| LIN52_RS25610 (81580) | 81580..82575 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| LIN52_RS25615 (82579) | 82579..83511 | + | 933 | WP_000991832.1 | S-4TM family putative pore-forming effector | - |
| LIN52_RS25625 (84559) | 84559..87675 | - | 3117 | WP_031311986.1 | HsdR family type I site-specific deoxyribonuclease | - |
| LIN52_RS25630 (87797) | 87797..89080 | - | 1284 | WP_001617890.1 | restriction endonuclease subunit S | - |
| LIN52_RS25635 (89077) | 89077..90633 | - | 1557 | WP_001553856.1 | type I restriction-modification system subunit M | - |
| LIN52_RS25640 (90816) | 90816..91037 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| LIN52_RS25645 (91037) | 91037..91417 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| LIN52_RS25650 (91422) | 91422..91601 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| LIN52_RS25655 (91629) | 91629..91907 | + | 279 | Protein_107 | pdcB | - |
| LIN52_RS25660 (91912) | 91912..92325 | + | 414 | Protein_108 | IS3 family transposase ISLad1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|