MGE detailed information
MGE type: Genomic_island MGE length: 83134 bp
Accession: NZ_CP085188 Location: 4315841..4398974 Organism: Escherichia coli strain EC195 Replicon: chromosome
Accession: NZ_CP085188 Location: 4315841..4398974 Organism: Escherichia coli strain EC195 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LIN52_RS20935 (4311212) | 4311212..4312396 | + | 1185 | WP_001218742.1 | tyrosine-type recombinase/integrase | - |
| LIN52_RS20940 (4312546) | 4312546..4313556 | + | 1011 | WP_000053331.1 | substrate-binding domain-containing protein | - |
| LIN52_RS20945 (4313652) | 4313652..4315778 | + | 2127 | WP_227264014.1 | alpha-galactosidase | - |
| LIN52_RS20950 (4315841) | 4315841..4317118 | + | 1278 | WP_001083368.1 | MFS transporter | - |
| LIN52_RS20955 (4317115) | 4317115..4318548 | + | 1434 | WP_024144973.1 | glycoside hydrolase family 32 protein | - |
| LIN52_RS20960 (4318743) | 4318743..4320137 | + | 1395 | WP_001037798.1 | carbohydrate porin | - |
| LIN52_RS25710 (4320715) | 4320715..4321002 | - | 288 | Protein_4099 | integrase core domain-containing protein | - |
| LIN52_RS20970 (4320991) | 4320991..4321352 | - | 362 | Protein_4100 | IS1 family transposase IS1A | Transposase |
| LIN52_RS20975 (4321402) | 4321402..4322436 | + | 1035 | WP_032153697.1 | tetratricopeptide repeat family protein | - |
| LIN52_RS20980 (4322580) | 4322580..4324253 | - | 1674 | WP_025492097.1 | sulfatase-like hydrolase/transferase | - |
| LIN52_RS20985 (4324306) | 4324306..4324503 | - | 198 | WP_001238004.1 | hypothetical protein | - |
| LIN52_RS20990 (4324643) | 4324643..4324909 | - | 267 | WP_000766274.1 | YkgJ family cysteine cluster protein | - |
| LIN52_RS20995 (4324906) | 4324906..4326477 | - | 1572 | WP_001100182.1 | ATP--cob(I)alamin adenosyltransferase | - |
| LIN52_RS21000 (4326524) | 4326524..4327603 | - | 1080 | WP_001207396.1 | hypothetical protein | - |
| LIN52_RS21005 (4327652) | 4327652..4328548 | - | 897 | WP_000228490.1 | WYL domain-containing protein | - |
| LIN52_RS21010 (4328968) | 4328968..4329705 | - | 738 | WP_128456209.1 | OmpW family outer membrane protein | - |
| LIN52_RS21015 (4330024) | 4330024..4330497 | + | 474 | WP_000335225.1 | H-NS family nucleoid-associated regulatory protein | - |
| LIN52_RS21020 (4331049) | 4331049..4332056 | - | 1008 | WP_001232703.1 | LacI family DNA-binding transcriptional regulator | - |
| LIN52_RS21025 (4332082) | 4332082..4333491 | - | 1410 | WP_023181052.1 | sucrose-6-phosphate hydrolase | - |
| LIN52_RS21030 (4333491) | 4333491..4334861 | - | 1371 | WP_000344909.1 | sucrose-specific PTS transporter subunit IIBC | - |
| LIN52_RS21035 (4334922) | 4334922..4336439 | - | 1518 | WP_000277208.1 | carbohydrate porin | - |
| LIN52_RS21040 (4336607) | 4336607..4337527 | - | 921 | WP_000107666.1 | aminoimidazole riboside kinase | - |
| LIN52_RS21045 (4337701) | 4337701..4337856 | - | 156 | WP_077070111.1 | hypothetical protein | - |
| LIN52_RS21050 (4338247) | 4338247..4338348 | + | 102 | Protein_4116 | transposase domain-containing protein | - |
| LIN52_RS21055 (4338460) | 4338460..4339122 | - | 663 | WP_000836532.1 | PAS domain-containing protein | - |
| LIN52_RS21060 (4339308) | 4339308..4340267 | + | 960 | WP_000765976.1 | sugar phosphate isomerase/epimerase family protein | - |
| LIN52_RS21065 (4340289) | 4340289..4340666 | + | 378 | WP_001389183.1 | RidA family protein | - |
| LIN52_RS21070 (4340681) | 4340681..4341913 | + | 1233 | WP_001389184.1 | MFS transporter | - |
| LIN52_RS21075 (4342178) | 4342178..4342903 | - | 726 | Protein_4121 | IS66 family transposase ISEc23 | Transposase |
| LIN52_RS21080 (4342934) | 4342934..4343284 | - | 351 | WP_000624710.1 | IS66 family transposase ISEc47 | Transposase |
| LIN52_RS21085 (4343281) | 4343281..4343700 | - | 420 | WP_000422706.1 | IS66 family transposase ISEc23 | Transposase |
| LIN52_RS21095 (4345275) | 4345275..4345990 | + | 716 | Protein_4125 | IS21 family transposase | - |
| LIN52_RS21100 (4346483) | 4346483..4346698 | + | 216 | WP_000021000.1 | PapB/FocB family fimbrial expression transcriptional regulator | - |
| LIN52_RS21105 (4346743) | 4346743..4347249 | + | 507 | WP_000920486.1 | Pap fimbrial major pilin protein | VF |
| LIN52_RS21110 (4347347) | 4347347..4347922 | + | 576 | WP_223873594.1 | PAP fimbrial minor pilin protein | VF |
| LIN52_RS21115 (4348043) | 4348043..4350553 | + | 2511 | WP_000739801.1 | Outer membrane usher protein PapC | VF |
| LIN52_RS21120 (4350622) | 4350622..4351353 | + | 732 | WP_001171049.1 | Chaperone protein PapD | VF |
| LIN52_RS21125 (4351444) | 4351444..4351953 | + | 510 | WP_230075137.1 | pilus-assembly fibrillin subunit | - |
| LIN52_RS21130 (4352037) | 4352037..4352555 | + | 519 | WP_001223371.1 | Fimbrial adapter PapF | VF |
| LIN52_RS21135 (4352578) | 4352578..4353567 | + | 990 | WP_165473670.1 | nuclease PIN | - |
| LIN52_RS21140 (4353620) | 4353620..4354402 | + | 783 | WP_000481332.1 | EAL domain-containing protein | - |
| LIN52_RS21145 (4354672) | 4354672..4354866 | - | 195 | Protein_4135 | transposase | - |
| LIN52_RS21150 (4355194) | 4355194..4355436 | - | 243 | Protein_4136 | IS110 family transposase | - |
| LIN52_RS21155 (4356018) | 4356018..4356194 | - | 177 | Protein_4137 | integrase | - |
| LIN52_RS25715 (4356283) | 4356283..4356333 | + | 51 | Protein_4138 | IS3 family transposase ISRaq1 | Transposase |
| LIN52_RS21160 (4356361) | 4356361..4356657 | + | 297 | Protein_4139 | transposase | - |
| LIN52_RS21165 (4356804) | 4356804..4357994 | - | 1191 | Protein_4140 | IS3 family transposase | - |
| LIN52_RS21170 (4358209) | 4358209..4359756 | - | 1548 | WP_001294844.1 | hypothetical protein | - |
| LIN52_RS21175 (4359756) | 4359756..4364714 | - | 4959 | WP_000877066.1 | AAA domain-containing protein | - |
| LIN52_RS21180 (4364922) | 4364922..4365077 | + | 156 | Protein_4143 | integrase | - |
| LIN52_RS21185 (4365114) | 4365114..4365728 | - | 615 | Protein_4144 | IS3 family transposase ISEc48 | Transposase |
| LIN52_RS21190 (4365916) | 4365916..4366245 | + | 330 | WP_000042910.1 | IS66 family transposase ISEc49 | Transposase |
| LIN52_RS21195 (4366232) | 4366232..4366624 | + | 393 | WP_000950652.1 | IS66 family transposase ISEc49 | Transposase |
| LIN52_RS21200 (4366631) | 4366631..4367505 | + | 875 | Protein_4147 | IS66 family transposase ISEc49 | Transposase |
| LIN52_RS21205 (4367501) | 4367501..4368310 | - | 810 | Protein_4148 | hypothetical protein | VF |
| LIN52_RS21210 (4368274) | 4368274..4369953 | - | 1680 | Protein_4149 | hypothetical protein | VF |
| LIN52_RS21215 (4369946) | 4369946..4370116 | - | 171 | Protein_4150 | hypothetical protein | - |
| LIN52_RS21220 (4370205) | 4370205..4370705 | - | 501 | WP_001167446.1 | hypothetical protein | - |
| LIN52_RS21225 (4370973) | 4370973..4371203 | - | 231 | WP_001389194.1 | AlpA family transcriptional regulator | - |
| LIN52_RS21230 (4371272) | 4371272..4371832 | - | 561 | WP_000991581.1 | hypothetical protein | - |
| LIN52_RS21235 (4372090) | 4372090..4372656 | - | 567 | WP_001126801.1 | inovirus-type Gp2 protein | - |
| LIN52_RS21240 (4374253) | 4374253..4375857 | - | 1605 | WP_001067608.1 | YfjI family protein | - |
| LIN52_RS21245 (4376291) | 4376291..4376497 | + | 207 | WP_025492114.1 | hypothetical protein | - |
| LIN52_RS21250 (4376509) | 4376509..4376769 | - | 261 | WP_223362175.1 | hypothetical protein | - |
| LIN52_RS21255 (4376793) | 4376793..4376948 | + | 156 | WP_020923993.1 | hypothetical protein | - |
| LIN52_RS21260 (4377042) | 4377042..4377773 | - | 732 | WP_032153707.1 | inovirus Gp2 family protein | - |
| LIN52_RS21265 (4379524) | 4379524..4380333 | + | 810 | WP_023155731.1 | hypothetical protein | - |
| LIN52_RS21270 (4380330) | 4380330..4381262 | - | 933 | WP_023155730.1 | hypothetical protein | - |
| LIN52_RS21275 (4381369) | 4381369..4382253 | + | 885 | WP_024166630.1 | 50S ribosome-binding GTPase | - |
| LIN52_RS21280 (4382372) | 4382372..4383049 | + | 678 | WP_023155728.1 | hypothetical protein | - |
| LIN52_RS21285 (4383079) | 4383079..4383288 | + | 210 | WP_023155727.1 | DUF905 family protein | - |
| LIN52_RS21290 (4383379) | 4383379..4384197 | + | 819 | WP_001234693.1 | DUF932 domain-containing protein | - |
| LIN52_RS21295 (4384289) | 4384289..4384774 | + | 486 | WP_032153711.1 | antirestriction protein | - |
| LIN52_RS21300 (4384790) | 4384790..4385266 | + | 477 | WP_001186715.1 | RadC family protein | - |
| LIN52_RS21305 (4385335) | 4385335..4385556 | + | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| LIN52_RS21310 (4385636) | 4385636..4386010 | + | 375 | WP_032153712.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | Antitoxin Detail |
| LIN52_RS21315 (4386057) | 4386057..4386434 | + | 378 | WP_000854735.1 | TA system toxin CbtA family protein | Toxin Detail |
| LIN52_RS21320 (4386431) | 4386431..4386922 | + | 492 | WP_023155722.1 | DUF5983 family protein | - |
| LIN52_RS21325 (4386934) | 4386934..4387131 | + | 198 | WP_000839265.1 | DUF957 domain-containing protein | - |
| LIN52_RS21330 (4387216) | 4387216..4388082 | + | 867 | WP_032153714.1 | DUF4942 domain-containing protein | - |
| LIN52_RS21335 (4388154) | 4388154..4388417 | + | 264 | WP_025492088.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| LIN52_RS21340 (4388414) | 4388414..4388740 | + | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LIN52_RS21345 (4389623) | 4389623..4391161 | + | 1539 | WP_001187182.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| LIN52_RS21350 (4391527) | 4391527..4392861 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| LIN52_RS21355 (4392941) | 4392941..4395088 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| LIN52_RS21360 (4395147) | 4395147..4396604 | + | 1458 | WP_000856841.1 | dipeptide/tripeptide permease DtpC | - |
| LIN52_RS21365 (4396841) | 4396841..4398358 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| LIN52_RS21370 (4398477) | 4398477..4398650 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| LIN52_RS21375 (4398678) | 4398678..4398974 | - | 297 | WP_001425728.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| LIN52_RS21380 (4399201) | 4399201..4399473 | - | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
| LIN52_RS21385 (4399485) | 4399485..4399715 | - | 231 | WP_000371700.1 | 4Fe-4S mono-cluster protein YjdI | - |
| LIN52_RS21390 (4399896) | 4399896..4401527 | + | 1632 | WP_001216487.1 | sensor histidine kinase | - |
| LIN52_RS21395 (4401524) | 4401524..4402243 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|