MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 177534 bp
Accession: NZ_CP085096 Location: 1160833..1338366 Organism: Aggregatibacter actinomycetemcomitans strain 4S Replicon: chromosome
Accession: NZ_CP085096 Location: 1160833..1338366 Organism: Aggregatibacter actinomycetemcomitans strain 4S Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LIN98_RS05930 | 1155995..1156204 | + | 210 | WP_005551608.1 | cold shock domain-containing protein CspD | - |
| LIN98_RS05935 | 1156270..1156716 | - | 447 | WP_005548741.1 | macrodomain Ter protein MatP | - |
| LIN98_RS05940 | 1156863..1158647 | + | 1785 | WP_148322214.1 | Lon protease family protein | - |
| LIN98_RS05945 | 1158790..1159320 | + | 531 | WP_005548745.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| LIN98_RS05955 | 1159745..1160101 | + | 357 | WP_005568104.1 | DsrE family protein | - |
| LIN98_RS05960 | 1160172..1163837 | + | 3666 | WP_148322212.1 | exodeoxyribonuclease V subunit beta | - |
| LIN98_RS05965 | 1163837..1165816 | + | 1980 | WP_014167814.1 | exodeoxyribonuclease V subunit alpha | - |
| LIN98_RS05970 | 1165829..1166425 | + | 597 | WP_005551622.1 | class I SAM-dependent methyltransferase | - |
| LIN98_RS05975 | 1166667..1167095 | + | 429 | WP_005542161.1 | 50S ribosomal protein L13 | - |
| LIN98_RS05980 | 1167112..1167504 | + | 393 | WP_005542159.1 | 30S ribosomal protein S9 | - |
| LIN98_RS05985 | 1167665..1168450 | + | 786 | WP_005565224.1 | tRNA pseudouridine(38-40) synthase TruA | - |
| LIN98_RS05990 | 1168463..1168745 | - | 283 | Protein_1146 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LIN98_RS05995 | 1168742..1168996 | - | 255 | WP_005542149.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| LIN98_RS06000 | 1169211..1170668 | - | 1458 | WP_005570474.1 | DASS family sodium-coupled anion symporter | - |
| LIN98_RS06005 | 1170898..1171677 | + | 780 | WP_005565228.1 | MmcQ/YjbR family DNA-binding protein | - |
| LIN98_RS06010 | 1171748..1174228 | - | 2481 | WP_005568115.1 | trimethylamine-N-oxide reductase TorA | - |
| LIN98_RS06015 | 1174289..1175389 | - | 1101 | WP_025298411.1 | NapC/NirT family cytochrome c | - |
| LIN98_RS06020 | 1175695..1177152 | + | 1458 | WP_005568119.1 | tRNA uracil 4-sulfurtransferase ThiI | - |
| LIN98_RS06025 | 1177236..1177940 | - | 705 | WP_005542137.1 | dipeptidase PepE | - |
| LIN98_RS06030 | 1178123..1179114 | + | 992 | Protein_1154 | virulence protein RhuM/Fic/DOC family protein | - |
| LIN98_RS06035 | 1179179..1180147 | - | 969 | WP_005568127.1 | uridine diphosphate-N-acetylglucosamine-binding protein YvcK | - |
| LIN98_RS06040 | 1180505..1181518 | + | 1014 | WP_005546100.1 | GTP 3',8-cyclase MoaA | - |
| LIN98_RS06045 | 1181570..1182052 | + | 483 | WP_033000664.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
| LIN98_RS06050 | 1182052..1182300 | + | 249 | WP_005546096.1 | molybdopterin synthase sulfur carrier subunit | - |
| LIN98_RS06055 | 1182301..1182756 | + | 456 | WP_005546093.1 | molybdopterin synthase catalytic subunit MoaE | - |
| LIN98_RS06060 | 1182956..1183597 | + | 642 | WP_005546091.1 | stringent starvation protein SspA | - |
| LIN98_RS06065 | 1183609..1184070 | + | 462 | WP_005546088.1 | ClpXP protease specificity-enhancing factor | - |
| LIN98_RS06070 | 1184233..1185636 | - | 1404 | WP_005546085.1 | asparagine--tRNA ligase | - |
| LIN98_RS06075 | 1185832..1187061 | + | 1230 | WP_014167808.1 | ROK family protein | - |
| LIN98_RS06080 | 1187138..1187866 | + | 729 | WP_005567663.1 | ATP-dependent dethiobiotin synthetase BioD | VF |
| LIN98_RS06085 | 1187955..1189529 | - | 1575 | WP_148322208.1 | autoinducer-2 kinase | - |
| LIN98_RS06090 | 1189579..1190544 | - | 966 | WP_005570782.1 | transcriptional regulator LsrR | - |
| LIN98_RS06095 | 1190788..1192303 | + | 1516 | Protein_1167 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LIN98_RS06100 | 1192313..1193344 | + | 1032 | WP_005572058.1 | autoinducer 2 ABC transporter permease LsrC | - |
| LIN98_RS06105 | 1193358..1194362 | + | 1005 | Protein_1169 | autoinducer 2 ABC transporter permease LsrD | - |
| LIN98_RS06110 | 1194387..1195484 | + | 1098 | WP_005567654.1 | autoinducer 2 ABC transporter substrate-binding protein LsrB | - |
| LIN98_RS06115 | 1195508..1196110 | + | 603 | WP_233443960.1 | hypothetical protein | - |
| LIN98_RS06120 | 1196509..1196682 | - | 174 | WP_081107556.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| LIN98_RS06125 | 1196831..1197085 | + | 255 | WP_148322206.1 | ProQ/FINO family protein | - |
| LIN98_RS06130 | 1197641..1198003 | + | 363 | WP_249856083.1 | hypothetical protein | VF |
| LIN98_RS06135 | 1198014..1198745 | + | 732 | WP_249856084.1 | type IV secretion system protein | - |
| LIN98_RS06140 | 1198759..1198986 | + | 228 | WP_061870015.1 | EexN family lipoprotein | - |
| LIN98_RS06145 | 1198996..1199997 | + | 1002 | WP_148345092.1 | type IV secretion system protein | - |
| LIN98_RS06150 | 1200249..1200935 | + | 687 | WP_249856085.1 | hypothetical protein | VF |
| LIN98_RS06155 | 1200937..1201794 | + | 858 | WP_249856086.1 | hypothetical protein | VF |
| LIN98_RS06160 | 1201804..1202913 | + | 1110 | WP_249856087.1 | hypothetical protein | VF |
| LIN98_RS06165 | 1202926..1203957 | + | 1032 | WP_249856088.1 | hypothetical protein | VF |
| LIN98_RS06170 | 1203957..1205606 | + | 1650 | WP_249856089.1 | type IV secretory system conjugative DNA transfer family protein | - |
| LIN98_RS06175 | 1205575..1205952 | + | 378 | Protein_1183 | 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase LsrF | - |
| LIN98_RS06180 | 1205985..1206287 | + | 303 | WP_005567651.1 | (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase | - |
| LIN98_RS06185 | 1206391..1207836 | - | 1446 | WP_249856090.1 | pyruvate kinase | - |
| LIN98_RS06190 | 1208083..1209072 | - | 990 | WP_014167806.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| LIN98_RS06195 | 1209205..1210890 | - | 1686 | WP_005567649.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| LIN98_RS06200 | 1211165..1211971 | - | 807 | WP_014167805.1 | tryptophan synthase subunit alpha | - |
| LIN98_RS06205 | 1211974..1213167 | - | 1194 | WP_005567646.1 | tryptophan synthase subunit beta | - |
| LIN98_RS06210 | 1213177..1213941 | - | 765 | WP_005592955.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| LIN98_RS06215 | 1214384..1217052 | + | 2669 | Protein_1191 | Vitamin B12 transporter BtuB | VF |
| LIN98_RS06220 | 1217456..1218760 | - | 1305 | WP_005567375.1 | sodium ion-translocating decarboxylase subunit beta | - |
| LIN98_RS06225 | 1218771..1220567 | - | 1797 | WP_005567376.1 | sodium-extruding oxaloacetate decarboxylase subunit alpha | - |
| LIN98_RS06230 | 1220583..1220849 | - | 267 | WP_005543457.1 | oxaloacetate decarboxylase subunit gamma | - |
| LIN98_RS06235 | 1221211..1221402 | + | 192 | WP_005553960.1 | hypothetical protein | - |
| LIN98_RS06240 | 1221377..1221754 | + | 378 | WP_005543455.1 | hypothetical protein | - |
| LIN98_RS06245 | 1221875..1222150 | - | 276 | WP_005561117.1 | hydrogenase maturation factor HybG | - |
| LIN98_RS06250 | 1222605..1224035 | - | 1431 | WP_005566276.1 | bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF | - |
| LIN98_RS06255 | 1224044..1224316 | - | 273 | WP_005543446.1 | HigA family addiction module antitoxin | Antitoxin Detail |
| LIN98_RS06260 | 1224332..1224610 | - | 279 | WP_005543444.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LIN98_RS06265 | 1224705..1225706 | - | 1002 | WP_014167798.1 | anthranilate phosphoribosyltransferase | - |
| LIN98_RS06270 | 1225718..1226110 | - | 393 | WP_005543439.1 | tautomerase family protein | - |
| LIN98_RS06275 | 1226184..1226774 | - | 591 | WP_005572120.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| LIN98_RS06280 | 1226785..1228332 | - | 1548 | WP_005572118.1 | Isochorismate synthase MenF | VF |
| LIN98_RS06285 | 1228500..1229054 | - | 555 | WP_005543432.1 | HAD family hydrolase | - |
| LIN98_RS06290 | 1229054..1229989 | - | 936 | WP_005543430.1 | Inosine-5'-monophosphate dehydrogenase | VF |
| LIN98_RS06300 | 1230672..1231547 | + | 876 | WP_005548951.1 | protease HtpX | - |
| LIN98_RS06305 | 1231887..1232876 | + | 990 | WP_005543396.1 | phenylalanine--tRNA ligase subunit alpha | - |
| LIN98_RS06310 | 1232896..1235286 | + | 2391 | WP_005589978.1 | phenylalanine--tRNA ligase subunit beta | - |
| LIN98_RS06315 | 1235290..1235586 | + | 297 | WP_005543400.1 | integration host factor subunit alpha | - |
| LIN98_RS06320 | 1235638..1236126 | + | 489 | WP_005572361.1 | hypothetical protein | VF |
| LIN98_RS06325 | 1236221..1237150 | - | 930 | WP_025298398.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| LIN98_RS06330 | 1237327..1237743 | + | 417 | WP_005544757.1 | DoxX family protein | - |
| LIN98_RS06335 | 1237833..1239095 | - | 1263 | WP_148326205.1 | Vitamin B12 transporter BtuB | VF |
| LIN98_RS06340 | 1239097..1239594 | - | 498 | WP_025298397.1 | hypothetical protein | - |
| LIN98_RS06345 | 1239805..1240806 | + | 1002 | WP_005544749.1 | Vitamin B12-binding protein | VF |
| LIN98_RS06350 | 1240806..1241819 | + | 1014 | WP_005544748.1 | Vitamin B12 import system permease protein BtuC | VF |
| LIN98_RS06355 | 1241816..1242565 | + | 750 | WP_005544746.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LIN98_RS06360 | 1242660..1243520 | + | 861 | WP_005570418.1 | Vitamin B12 transporter BtuB | VF |
| LIN98_RS06365 | 1243548..1245056 | + | 1509 | WP_005568726.1 | Vitamin B12 transporter BtuB | VF |
| LIN98_RS06370 | 1245175..1245384 | - | 210 | WP_005543485.1 | TOBE domain-containing protein | - |
| LIN98_RS06375 | 1245466..1246500 | - | 1035 | WP_005568729.1 | ABC transporter substrate-binding protein | - |
| LIN98_RS06380 | 1246513..1247301 | - | 789 | WP_005544738.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LIN98_RS06385 | 1247307..1248293 | - | 987 | WP_005589363.1 | Vitamin B12 import system permease protein BtuC | VF |
| LIN98_RS06390 | 1248454..1249872 | - | 1419 | WP_148326203.1 | TolC family protein | - |
| LIN98_RS06395 | 1249892..1251019 | - | 1128 | WP_249856091.1 | ABC transporter permease | - |
| LIN98_RS06400 | 1251021..1253765 | - | 2745 | WP_005544729.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LIN98_RS06405 | 1253768..1254748 | - | 981 | WP_005590683.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| LIN98_RS06410 | 1254896..1255459 | + | 564 | WP_005568741.1 | hypothetical protein ; Integrase | Integrase |
| LIN98_RS06415 | 1255510..1256700 | - | 1191 | WP_014167794.1 | amino acid aminotransferase | - |
| LIN98_RS06420 | 1257122..1259731 | + | 2610 | WP_249856092.1 | aminopeptidase N | - |
| LIN98_RS06425 | 1259804..1260823 | + | 1020 | WP_005574487.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| LIN98_RS06430 | 1260837..1261673 | + | 837 | WP_005570367.1 | PHP domain-containing protein | - |
| LIN98_RS06435 | 1261911..1264517 | + | 2607 | WP_005544715.1 | type I DNA topoisomerase | - |
| LIN98_RS06440 | 1264602..1265438 | - | 837 | WP_005568752.1 | DUF4198 domain-containing protein | - |
| LIN98_RS06445 | 1265565..1266497 | - | 933 | WP_005568754.1 | universal stress protein UspE | - |
| LIN98_RS06450 | 1266616..1267389 | - | 774 | WP_005544709.1 | FNR family transcription factor | - |
| LIN98_RS06455 | 1267498..1267668 | + | 171 | WP_005544707.1 | hypothetical protein | - |
| LIN98_RS06460 | 1267730..1268227 | - | 498 | WP_005544705.1 | non-heme ferritin | - |
| LIN98_RS06465 | 1268243..1268728 | - | 486 | WP_005544704.1 | non-heme ferritin | - |
| LIN98_RS06470 | 1269549..1270203 | - | 655 | Protein_1241 | phage/plasmid replication protein | - |
| LIN98_RS06475 | 1270904..1271710 | - | 807 | WP_249847582.1 | IS3 family transposase ISHar1 | Transposase |
| LIN98_RS06480 | 1271707..1272046 | - | 340 | Protein_1243 | helix-turn-helix domain-containing protein | - |
| LIN98_RS06485 | 1272128..1273552 | - | 1425 | WP_187370360.1 | exodeoxyribonuclease I | - |
| LIN98_RS06490 | 1273584..1274438 | - | 855 | WP_005591967.1 | DMT family transporter | - |
| LIN98_RS06495 | 1274514..1279004 | - | 4491 | WP_148326019.1 | chromosome partition protein MukB | - |
| LIN98_RS06500 | 1279004..1279744 | - | 741 | WP_005538866.1 | chromosome partition protein MukE | - |
| LIN98_RS06505 | 1279765..1283226 | - | 3462 | WP_053330322.1 | acyl-[ACP]--phospholipid O-acyltransferase | - |
| LIN98_RS06510 | 1283241..1283378 | - | 138 | WP_005538864.1 | hypothetical protein | - |
| LIN98_RS06515 | 1283406..1284734 | - | 1329 | WP_005566302.1 | chromosome partition protein MukF | - |
| LIN98_RS06520 | 1284951..1285793 | - | 843 | WP_249856093.1 | serine hydrolase | - |
| LIN98_RS06525 | 1285941..1286549 | - | 609 | WP_005538861.1 | hypothetical protein | - |
| LIN98_RS06530 | 1286697..1286984 | - | 288 | WP_005538860.1 | 50S ribosomal protein L25 | - |
| LIN98_RS06535 | 1287198..1287803 | + | 606 | WP_005538859.1 | DedA family protein | - |
| LIN98_RS06540 | 1287922..1290387 | - | 2466 | WP_014167785.1 | glycogen/starch/alpha-glucan phosphorylase | - |
| LIN98_RS06545 | 1290511..1291950 | - | 1440 | WP_053330323.1 | glycogen synthase GlgA | - |
| LIN98_RS06550 | 1292152..1293462 | - | 1311 | WP_005568925.1 | glucose-1-phosphate adenylyltransferase | - |
| LIN98_RS06555 | 1293489..1295498 | - | 2010 | WP_014167783.1 | glycogen debranching protein GlgX | - |
| LIN98_RS06560 | 1295495..1297690 | - | 2196 | WP_005569481.1 | 1,4-alpha-glucan branching protein GlgB | - |
| LIN98_RS06565 | 1297687..1298247 | - | 561 | WP_005545429.1 | hypothetical protein | - |
| LIN98_RS06570 | 1298347..1298781 | - | 435 | WP_005545427.1 | YcgN family cysteine cluster protein | - |
| LIN98_RS06575 | 1298853..1300523 | - | 1671 | WP_005568919.1 | glutamine--tRNA ligase | - |
| LIN98_RS06580 | 1300745..1301929 | + | 1185 | WP_005545424.1 | efflux RND transporter periplasmic adaptor subunit | - |
| LIN98_RS06585 | 1301949..1303883 | + | 1935 | WP_005545422.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LIN98_RS06590 | 1303960..1305333 | + | 1374 | WP_005545419.1 | TolC family protein | - |
| LIN98_RS06595 | 1305606..1306984 | - | 1379 | Protein_1266 | subtype B tannase | - |
| LIN98_RS06600 | 1307614..1308039 | - | 426 | WP_005590791.1 | DNA-binding protein | - |
| LIN98_RS06605 | 1308283..1308438 | + | 156 | WP_080630345.1 | helix-turn-helix domain-containing protein | - |
| LIN98_RS06610 | 1308450..1310147 | + | 1698 | WP_231098022.1 | P-loop NTPase fold protein | - |
| LIN98_RS06615 | 1310198..1310521 | - | 324 | WP_005568342.1 | zinc ribbon domain-containing protein YjdM | - |
| LIN98_RS06620 | 1310604..1311467 | - | 864 | WP_005559623.1 | DMT family transporter | - |
| LIN98_RS06625 | 1311512..1312189 | - | 678 | WP_050846374.1 | TIGR01621 family pseudouridine synthase | - |
| LIN98_RS06630 | 1312320..1313228 | + | 909 | WP_014167775.1 | lysine exporter LysO family protein | - |
| LIN98_RS06635 | 1313242..1314699 | + | 1458 | WP_148326253.1 | cardiolipin synthase | - |
| LIN98_RS06640 | 1314761..1315402 | + | 642 | WP_005546384.1 | histidine phosphatase family protein | - |
| LIN98_RS06645 | 1315459..1316805 | - | 1347 | WP_005568334.1 | bifunctional tetrahydrofolate synthase/dihydrofolate synthase | - |
| LIN98_RS06650 | 1316828..1317724 | - | 897 | WP_005588913.1 | acetyl-CoA carboxylase, carboxyltransferase subunit beta | - |
| LIN98_RS06655 | 1317949..1318194 | + | 246 | WP_005546390.1 | exodeoxyribonuclease VII small subunit | - |
| LIN98_RS06660 | 1318205..1319095 | + | 891 | WP_005568332.1 | (2E,6E)-farnesyl diphosphate synthase | - |
| LIN98_RS06665 | 1319180..1321030 | + | 1851 | WP_005546395.1 | 1-deoxy-D-xylulose-5-phosphate synthase | - |
| LIN98_RS06670 | 1321150..1321908 | - | 759 | WP_005546397.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| LIN98_RS06675 | 1321976..1323019 | - | 1044 | WP_014167772.1 | galactitol-1-phosphate 5-dehydrogenase | - |
| LIN98_RS06680 | 1323042..1323668 | - | 627 | WP_233443970.1 | PTS transporter subunit IIC | - |
| LIN98_RS06685 | 1323686..1323826 | - | 141 | Protein_1284 | class II D-tagatose-bisphosphate aldolase, non-catalytic subunit | - |
| LIN98_RS06690 | 1323844..1324794 | - | 951 | WP_014167770.1 | tagatose 1,6-diphosphate aldolase | - |
| LIN98_RS06695 | 1325639..1325719 | - | 81 | Protein_1286 | IS200/IS605 family transposase | - |
| LIN98_RS06700 | 1325787..1326047 | + | 261 | WP_080996231.1 | hypothetical protein | - |
| LIN98_RS06705 | 1326096..1326449 | - | 354 | WP_005546410.1 | 50S ribosomal protein L20 | - |
| LIN98_RS06710 | 1326503..1326700 | - | 198 | WP_249856094.1 | 50S ribosomal protein L35 | - |
| LIN98_RS06715 | 1326924..1327466 | - | 543 | WP_071805301.1 | translation initiation factor IF-3 | - |
| LIN98_RS06720 | 1327778..1328557 | + | 780 | WP_005546417.1 | ferredoxin--NADP reductase | - |
| LIN98_RS06725 | 1328674..1329909 | - | 1236 | WP_187370359.1 | hypothetical protein | - |
| LIN98_RS06730 | 1329887..1330240 | - | 354 | WP_005593394.1 | hypothetical protein | - |
| LIN98_RS06735 | 1330501..1332432 | - | 1932 | WP_005546427.1 | threonine--tRNA ligase | - |
| LIN98_RS06740 | 1332673..1333548 | + | 876 | WP_249856095.1 | fructosamine kinase family protein | - |
| LIN98_RS06745 | 1333607..1334431 | - | 825 | WP_249856096.1 | Outer membrane protein assembly factor BamE | VF |
| LIN98_RS06750 | 1334621..1335679 | - | 1059 | WP_005546434.1 | protease SohB | - |
| LIN98_RS06755 | 1335872..1336462 | + | 591 | WP_005546436.1 | NAD(P)H-dependent oxidoreductase | - |
| LIN98_RS06760 | 1336565..1337902 | - | 1338 | WP_005546438.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| LIN98_RS06765 | 1338079..1339668 | - | 1590 | WP_005589337.1 | glycerol-3-phosphate dehydrogenase/oxidase | - |
| LIN98_RS06770 | 1339938..1340786 | - | 849 | WP_005546443.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| LIN98_RS06775 | 1340863..1342581 | + | 1719 | WP_014167766.1 | penicillin-binding protein activator | - |
| LIN98_RS06780 | 1342591..1342950 | + | 360 | Protein_1303 | YraN family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|