MGE detailed information
MGE type: Prophage MGE length: 68704 bp
Accession: NZ_CP085063 Location: 571024..639727 Organism: Escherichia coli strain P31_YH1_02.21 Replicon: chromosome
Accession: NZ_CP085063 Location: 571024..639727 Organism: Escherichia coli strain P31_YH1_02.21 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH370_RS02850 (566923) | 566923..568143 | + | 1221 | WP_021523109.1 | DNA-binding transcriptional repressor Mlc | - |
| LH370_RS02855 (568268) | 568268..568963 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| LH370_RS02860 (568916) | 568916..570208 | - | 1293 | WP_071593650.1 | voltage-gated ClC-type chloride channel ClcB | - |
| LH370_RS02865 (570367) | 570367..570981 | - | 615 | WP_001520571.1 | Tat proofreading chaperone DmsD | - |
| LH370_RS02870 (571024) | 571024..571878 | - | 855 | WP_020233477.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| LH370_RS02875 (571880) | 571880..572497 | - | 618 | WP_001520568.1 | dimethylsulfoxide reductase subunit B | - |
| LH370_RS02880 (572508) | 572508..574931 | - | 2424 | WP_072170800.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LH370_RS02885 (574992) | 574992..577418 | - | 2427 | WP_001551145.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LH370_RS02890 (577617) | 577617..577922 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| LH370_RS02895 (578030) | 578030..578740 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| LH370_RS02900 (578743) | 578743..579303 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| LH370_RS02905 (579338) | 579338..579679 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| LH370_RS02910 (579814) | 579814..580140 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| LH370_RS02915 (580346) | 580346..581560 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LH370_RS02920 (581572) | 581572..582591 | + | 1020 | WP_000836037.1 | Zn-dependent oxidoreductase | - |
| LH370_RS02925 (582779) | 582779..584059 | - | 1281 | WP_021523105.1 | Putative defective protein IntQ ; Integrase | Integrase |
| LH370_RS02930 (584094) | 584094..584345 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| LH370_RS02935 (584418) | 584418..586889 | - | 2472 | WP_000048363.1 | exonuclease | - |
| LH370_RS02940 (586983) | 586983..587174 | - | 192 | WP_001083276.1 | lysis protein YdfD | - |
| LH370_RS02945 (587171) | 587171..587359 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LH370_RS02950 (587846) | 587846..588421 | - | 576 | WP_000344950.1 | hypothetical protein | - |
| LH370_RS02955 (588423) | 588423..588578 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LH370_RS02960 (588747) | 588747..589154 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| LH370_RS02965 (589235) | 589235..589462 | + | 228 | WP_000921596.1 | Cro/CI family transcriptional regulator | - |
| LH370_RS02970 (589446) | 589446..589967 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| LH370_RS02975 (589948) | 589948..590913 | + | 966 | WP_000054487.1 | hypothetical protein | - |
| LH370_RS02980 (590954) | 590954..591352 | + | 399 | WP_001151242.1 | DUF977 family protein | - |
| LH370_RS02985 (591555) | 591555..592220 | + | 666 | WP_021523102.1 | epoxyqueuosine reductase QueH | - |
| LH370_RS02990 (592429) | 592429..593043 | + | 615 | WP_001265627.1 | hypothetical protein | - |
| LH370_RS02995 (593046) | 593046..594068 | + | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
| LH370_RS03000 (594573) | 594573..595595 | + | 1023 | Protein_587 | ISNCY family transposase ISCARN112 | Transposase |
| LH370_RS03005 (595716) | 595716..595865 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| LH370_RS03010 (596302) | 596302..596634 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LH370_RS03015 (596837) | 596837..597142 | - | 306 | WP_001326990.1 | protein YdfV | - |
| LH370_RS03020 (597167) | 597167..597406 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LH370_RS03025 (597406) | 597406..597693 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LH370_RS03030 (597765) | 597765..597920 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LH370_RS03035 (598137) | 598137..598388 | + | 252 | WP_000980994.1 | protein Rem | - |
| LH370_RS03040 (598455) | 598455..598733 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| LH370_RS03045 (598735) | 598735..599784 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| LH370_RS03050 (599798) | 599798..600550 | + | 753 | WP_001047135.1 | antitermination protein | - |
| LH370_RS03055 (600828) | 600828..600917 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| LH370_RS03060 (600972) | 600972..601184 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LH370_RS03065 (601485) | 601485..601700 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LH370_RS03070 (602064) | 602064..602234 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LH370_RS03075 (602454) | 602454..602669 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LH370_RS03080 (602674) | 602674..602985 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| LH370_RS03085 (602982) | 602982..603515 | + | 534 | WP_001092971.1 | lysozyme | - |
| LH370_RS03090 (603512) | 603512..604009 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LH370_RS03095 (604372) | 604372..604584 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LH370_RS03100 (604595) | 604595..604783 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LH370_RS03105 (604786) | 604786..604851 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| LH370_RS03110 (604931) | 604931..605086 | + | 156 | WP_001309517.1 | protein YnfN | - |
| LH370_RS03115 (605258) | 605258..605431 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LH370_RS03120 (605583) | 605583..605993 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LH370_RS03125 (606051) | 606051..606284 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LH370_RS03130 (606673) | 606673..607218 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| LH370_RS03135 (607193) | 607193..609118 | + | 1926 | WP_001027269.1 | phage terminase large subunit family protein | - |
| LH370_RS03140 (609115) | 609115..609321 | + | 207 | WP_000198149.1 | gpW family protein | - |
| LH370_RS03145 (609318) | 609318..610919 | + | 1602 | WP_001356819.1 | phage portal protein | - |
| LH370_RS03150 (610900) | 610900..612219 | + | 1320 | WP_020233915.1 | S49 family peptidase | - |
| LH370_RS03155 (612229) | 612229..612561 | + | 333 | WP_001708751.1 | head decoration protein | - |
| LH370_RS03160 (612616) | 612616..613641 | + | 1026 | WP_000063277.1 | major capsid protein | - |
| LH370_RS03165 (613683) | 613683..614081 | + | 399 | WP_020233914.1 | DNA-packaging protein FI | - |
| LH370_RS03170 (614093) | 614093..614446 | + | 354 | WP_000752979.1 | head-tail joining protein | - |
| LH370_RS03175 (614458) | 614458..615037 | + | 580 | Protein_622 | phage tail protein | - |
| LH370_RS03180 (615034) | 615034..615429 | + | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| LH370_RS03185 (615437) | 615437..616177 | + | 741 | WP_001349920.1 | phage tail protein | - |
| LH370_RS03190 (616193) | 616193..616615 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| LH370_RS03195 (616597) | 616597..617031 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| LH370_RS03200 (617024) | 617024..619585 | + | 2562 | WP_032153656.1 | phage tail tape measure protein | - |
| LH370_RS03205 (619582) | 619582..619911 | + | 330 | WP_000847345.1 | phage tail protein | - |
| LH370_RS03210 (619911) | 619911..620609 | + | 699 | WP_001551186.1 | phage minor tail protein L | - |
| LH370_RS03215 (620615) | 620615..621358 | + | 744 | WP_032153655.1 | C40 family peptidase | - |
| LH370_RS03220 (621295) | 621295..621897 | + | 603 | WP_049286672.1 | tail assembly protein | - |
| LH370_RS03225 (621958) | 621958..625437 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| LH370_RS03230 (625505) | 625505..626104 | + | 600 | WP_001542091.1 | Outer membrane protein X | VF |
| LH370_RS03235 (626169) | 626169..628568 | + | 2400 | WP_032152843.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LH370_RS03240 (628565) | 628565..628846 | + | 282 | WP_000654154.1 | hypothetical protein | - |
| LH370_RS03245 (628856) | 628856..629560 | + | 705 | WP_000235967.1 | tail fiber domain-containing protein | - |
| LH370_RS03250 (629571) | 629571..629864 | + | 294 | WP_000355609.1 | hypothetical protein | - |
| LH370_RS03255 (629884) | 629884..629994 | + | 111 | Protein_638 | tail fiber assembly protein | - |
| LH370_RS03260 (630092) | 630092..630682 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LH370_RS03265 (630999) | 630999..631232 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LH370_RS03270 (631301) | 631301..631414 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LH370_RS03275 (632018) | 632018..633301 | + | 1284 | Protein_642 | MHS family MFS transporter YdfJ | - |
| LH370_RS03280 (633390) | 633390..634850 | + | 1461 | WP_000527786.1 | mannitol dehydrogenase family protein | - |
| LH370_RS03285 (634886) | 634886..635089 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LH370_RS03290 (635267) | 635267..635953 | - | 687 | WP_000215553.1 | DNA-binding transcriptional regulator rspR | - |
| LH370_RS03295 (636042) | 636042..636788 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| LH370_RS03300 (636925) | 636925..638970 | + | 2046 | WP_001523328.1 | peptidyl-dipeptidase Dcp | - |
| LH370_RS03305 (639015) | 639015..639095 | - | 81 | Protein_648 | hypothetical protein | - |
| LH370_RS03310 (639335) | 639335..639727 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| LH370_RS03315 (639982) | 639982..640872 | + | 891 | WP_001523326.1 | diguanylate cyclase DgcZ | - |
| LH370_RS03320 (640987) | 640987..641091 | - | 105 | WP_211180496.1 | protein MgtT | - |
| LH370_RS03325 (641091) | 641091..641186 | - | 96 | WP_000901367.1 | protein MgtS | - |
| LH370_RS03330 (641313) | 641313..642500 | - | 1188 | WP_001523325.1 | efflux MFS transporter YdeE | - |
| LH370_RS03335 (642695) | 642695..643594 | + | 900 | WP_000087220.1 | O-acetylserine/cysteine exporter | - |
| LH370_RS03340 (643639) | 643639..644337 | - | 699 | WP_020233615.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|