MGE detailed information
MGE type: Conjugative plasmid MGE length: 66866 bp
Accession: NZ_CP085062 Location: 1..66866 Organism: Escherichia coli strain P30_L1_05.20 Replicon: plasmid unnamed1
Accession: NZ_CP085062 Location: 1..66866 Organism: Escherichia coli strain P30_L1_05.20 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH369_RS24430 (46) | 46..1077 | + | 1032 | WP_023518831.1 | plasmid replication initiator RepA | - |
| LH369_RS24435 (2146) | 2146..2655 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| LH369_RS24440 (2711) | 2711..3313 | - | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| LH369_RS24445 (3667) | 3667..5013 | + | 1347 | WP_039052405.1 | protein YagA | - |
| LH369_RS24450 (5520) | 5520..5822 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| LH369_RS24455 (5819) | 5819..6445 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| LH369_RS24460 (6633) | 6633..7904 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| LH369_RS24465 (7904) | 7904..8341 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LH369_RS24470 (8338) | 8338..8586 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| LH369_RS24475 (9004) | 9004..9906 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| LH369_RS24480 (9910) | 9910..9996 | + | 87 | Protein_10 | hypothetical protein | - |
| LH369_RS24485 (10001) | 10001..10336 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| LH369_RS24490 (10674) | 10674..11654 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| LH369_RS24495 (11657) | 11657..12079 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| LH369_RS24500 (12083) | 12083..12393 | + | 311 | Protein_14 | hypothetical protein | - |
| LH369_RS24505 (12469) | 12469..13152 | + | 684 | WP_000086127.1 | DNA methylase | - |
| LH369_RS24510 (13153) | 13153..13374 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| LH369_RS24515 (13304) | 13304..13822 | + | 519 | WP_202864534.1 | DUF1380 family protein | - |
| LH369_RS24520 (13867) | 13867..14637 | + | 771 | WP_011264064.1 | hypothetical protein | - |
| LH369_RS24525 (15055) | 15055..15480 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| LH369_RS24530 (15527) | 15527..15949 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| LH369_RS24535 (15946) | 15946..16137 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| LH369_RS24540 (16208) | 16208..16522 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| LH369_RS24545 (16906) | 16906..16980 | + | 75 | Protein_23 | single-stranded DNA-binding protein | - |
| LH369_RS24550 (16981) | 16981..18270 | + | 1290 | Protein_24 | hypothetical protein | - |
| LH369_RS24555 (18323) | 18323..18757 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| LH369_RS24560 (18754) | 18754..19473 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| LH369_RS24565 (19470) | 19470..20066 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| LH369_RS24570 (20528) | 20528..21028 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| LH369_RS24575 (21757) | 21757..22191 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| LH369_RS24580 (22285) | 22285..22551 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| LH369_RS24585 (22728) | 22728..23117 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| LH369_RS24590 (23114) | 23114..24016 | + | 903 | WP_011264057.1 | Recombination-promoting nuclease RpnA | VF |
| LH369_RS24595 (24078) | 24078..24284 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| LH369_RS24600 (24315) | 24315..24566 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| LH369_RS24605 (25146) | 25146..25994 | + | 849 | WP_001599394.1 | DUF4942 domain-containing protein | - |
| LH369_RS24610 (26081) | 26081..26416 | - | 336 | WP_021529212.1 | hypothetical protein | - |
| LH369_RS24615 (26650) | 26650..26982 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| LH369_RS24620 (26993) | 26993..29692 | + | 2700 | WP_011264053.1 | Protein TraI | Relaxase |
| LH369_RS24625 (29730) | 29730..32021 | - | 2292 | WP_011264051.1 | F-type conjugative transfer protein TrbC | - |
| LH369_RS24630 (32014) | 32014..33084 | - | 1071 | WP_011264050.1 | IncI1-type conjugal transfer protein TrbB | - |
| LH369_RS24635 (33103) | 33103..34311 | - | 1209 | WP_011264049.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (34491) | 34491..34548 | - | 58 | NuclAT_1 | - | - |
| - (34491) | 34491..34548 | - | 58 | NuclAT_1 | - | - |
| - (34491) | 34491..34548 | - | 58 | NuclAT_1 | - | - |
| - (34491) | 34491..34548 | - | 58 | NuclAT_1 | - | - |
| LH369_RS24640 (34618) | 34618..35400 | - | 783 | WP_023063753.1 | protein FinQ | - |
| LH369_RS24645 (35596) | 35596..35913 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| LH369_RS24650 (35910) | 35910..36443 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| LH369_RS24655 (36537) | 36537..37682 | - | 1146 | WP_075985684.1 | Beta-lactamase | ARG |
| LH369_RS24665 (38887) | 38887..39126 | + | 240 | Protein_47 | transcription termination factor NusG | - |
| LH369_RS24670 (39380) | 39380..40063 | + | 684 | WP_023518856.1 | conjugal transfer protein TraC | - |
| LH369_RS24675 (40235) | 40235..40489 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| LH369_RS24680 (41536) | 41536..42603 | + | 1068 | WP_001360287.1 | hypothetical protein | VF |
| LH369_RS24685 (42603) | 42603..43040 | + | 438 | WP_000539806.1 | hypothetical protein | VF |
| LH369_RS24690 (43054) | 43054..44736 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| LH369_RS24695 (44729) | 44729..46024 | + | 1296 | Protein_53 | type 4b pilus protein PilO2 | - |
| LH369_RS24700 (46011) | 46011..46463 | + | 453 | WP_001247337.1 | hypothetical protein | VF |
| LH369_RS24705 (46474) | 46474..48027 | + | 1554 | WP_023518854.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| LH369_RS24710 (48040) | 48040..49125 | + | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| LH369_RS24715 (49142) | 49142..49756 | + | 615 | WP_000908227.1 | hypothetical protein | VF |
| LH369_RS24720 (49766) | 49766..50326 | + | 561 | WP_000014005.1 | hypothetical protein | VF |
| LH369_RS24725 (50311) | 50311..50967 | + | 657 | WP_001401940.1 | hypothetical protein | VF |
| LH369_RS24730 (50955) | 50955..52268 | + | 1314 | WP_077135598.1 | hypothetical protein | VF |
| LH369_RS24735 (52558) | 52558..52911 | - | 354 | WP_001393368.1 | hypothetical protein | - |
| LH369_RS24740 (52910) | 52910..54064 | + | 1155 | WP_001139955.1 | site-specific integrase | - |
| LH369_RS24745 (54215) | 54215..55039 | + | 825 | WP_023518851.1 | conjugal transfer protein TraE | - |
| LH369_RS24750 (55125) | 55125..56327 | + | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| LH369_RS24755 (56387) | 56387..56971 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| LH369_RS24760 (57366) | 57366..57482 | + | 117 | Protein_66 | IncI1-type conjugal transfer lipoprotein TraH | - |
| LH369_RS24765 (57481) | 57481..59235 | + | 1755 | Protein_67 | DotA/TraY family protein | - |
| LH369_RS24770 (59306) | 59306..59968 | + | 663 | WP_000644796.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LH369_RS24775 (60040) | 60040..60249 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| LH369_RS24780 (60641) | 60641..60817 | + | 177 | WP_001054897.1 | hypothetical protein | - |
| LH369_RS24785 (60882) | 60882..61178 | - | 297 | WP_011264046.1 | DinQ-like type I toxin DqlB | - |
| LH369_RS24790 (61478) | 61478..61729 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| LH369_RS24795 (61801) | 61801..61953 | - | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| - (62005) | 62005..62065 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (62005) | 62005..62065 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (62005) | 62005..62065 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (62005) | 62005..62065 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| LH369_RS24800 (62274) | 62274..62648 | + | 375 | WP_223349261.1 | hypothetical protein | - |
| LH369_RS24805 (62801) | 62801..63958 | + | 1158 | Protein_75 | IS1380 family transposase ISEcp1 | Transposase |
| LH369_RS24810 (64014) | 64014..64711 | + | 698 | WP_095033700.1 | IS1-like element IS1B family transposase | - |
| LH369_RS24815 (64722) | 64722..65030 | - | 309 | WP_039023235.1 | transcription termination/antitermination NusG family protein | - |
| LH369_RS24820 (65472) | 65472..65759 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| LH369_RS24825 (65797) | 65797..65955 | - | 159 | Protein_79 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|