MGE detailed information
MGE type: Prophage MGE length: 85011 bp
Accession: NZ_CP084879 Location: 998222..1083232 Organism: Shigella flexneri strain CMCC51574 Replicon: chromosome
Accession: NZ_CP084879 Location: 998222..1083232 Organism: Shigella flexneri strain CMCC51574 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGV73_RS04910 (993527) | 993527..993973 | + | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
| LGV73_RS04915 (994016) | 994016..996460 | - | 2445 | WP_025746263.1 | acyl-CoA dehydrogenase FadE | - |
| LGV73_RS04920 (996700) | 996700..997278 | + | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
| LGV73_RS04925 (997484) | 997484..998251 | + | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| LGV73_RS04930 (998222) | 998222..998962 | - | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| LGV73_RS04935 (999346) | 999346..999867 | + | 522 | Protein_968 | hypothetical protein | VF |
| LGV73_RS04940 (1000043) | 1000043..1000540 | + | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| LGV73_RS04945 (1000757) | 1000757..1002469 | - | 1713 | Protein_970 | hypothetical protein | VF |
| LGV73_RS04950 (1002441) | 1002441..1003226 | + | 786 | WP_000207561.1 | hypothetical protein | VF |
| LGV73_RS04955 (1003297) | 1003297..1004352 | + | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| LGV73_RS04960 (1004404) | 1004404..1004697 | + | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| LGV73_RS04965 (1004700) | 1004700..1005098 | + | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| LGV73_RS04970 (1005108) | 1005108..1005560 | + | 453 | WP_001059861.1 | GNAT family N-acetyltransferase | - |
| LGV73_RS04975 (1005806) | 1005806..1006849 | + | 1044 | WP_005060486.1 | RNA ligase RtcB family protein | - |
| LGV73_RS04980 (1006965) | 1006965..1007525 | + | 561 | Protein_977 | peptide chain release factor H | - |
| LGV73_RS04985 (1007582) | 1007582..1009039 | - | 1458 | WP_001293009.1 | cytosol nonspecific dipeptidase | - |
| LGV73_RS04990 (1009301) | 1009301..1009759 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| - (1010355) | 1010355..1010435 | + | 81 | NuclAT_9 | - | - |
| - (1010355) | 1010355..1010435 | + | 81 | NuclAT_9 | - | - |
| - (1010355) | 1010355..1010435 | + | 81 | NuclAT_9 | - | - |
| - (1010355) | 1010355..1010435 | + | 81 | NuclAT_9 | - | - |
| LGV73_RS04995 (1009851) | 1009851..1011095 | + | 1245 | WP_000189558.1 | esterase FrsA | - |
| LGV73_RS05000 (1011153) | 1011153..1011554 | + | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
| LGV73_RS05005 (1011593) | 1011593..1012648 | - | 1056 | WP_000749864.1 | phosphoporin PhoE | - |
| LGV73_RS05010 (1012824) | 1012824..1013521 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| LGV73_RS05015 (1013712) | 1013712..1014815 | + | 1104 | WP_001285281.1 | glutamate 5-kinase | - |
| LGV73_RS05020 (1014827) | 1014827..1016080 | + | 1254 | WP_272606634.1 | glutamate-5-semialdehyde dehydrogenase | - |
| LGV73_RS05030 (1016285) | 1016285..1017403 | - | 1119 | WP_223716396.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| LGV73_RS05035 (1017325) | 1017325..1017675 | - | 351 | WP_000446902.1 | helix-turn-helix domain-containing protein | - |
| LGV73_RS05040 (1017647) | 1017647..1017925 | - | 279 | WP_000488407.1 | DUF4222 domain-containing protein | - |
| LGV73_RS05045 (1017973) | 1017973..1018191 | - | 219 | WP_000763364.1 | TraR/DksA family transcriptional regulator | - |
| LGV73_RS05050 (1018290) | 1018290..1018505 | - | 216 | WP_000188870.1 | hypothetical protein | - |
| LGV73_RS05055 (1018582) | 1018582..1018773 | - | 192 | WP_000548531.1 | DUF1382 family protein | - |
| LGV73_RS05060 (1018746) | 1018746..1018928 | - | 183 | WP_000682306.1 | DUF1317 domain-containing protein | - |
| LGV73_RS05065 (1018925) | 1018925..1019605 | - | 681 | WP_000186779.1 | YqaJ viral recombinase family protein | - |
| LGV73_RS05070 (1019602) | 1019602..1020033 | - | 432 | Protein_994 | recombinase RecT | - |
| LGV73_RS05075 (1020042) | 1020042..1021210 | - | 1169 | Protein_995 | IS3 family transposase ISLad1 | Transposase |
| LGV73_RS05080 (1021283) | 1021283..1021639 | - | 357 | Protein_996 | phage recombination protein Bet | - |
| LGV73_RS05085 (1021645) | 1021645..1021941 | - | 297 | WP_032084545.1 | host-nuclease inhibitor Gam family protein | - |
| LGV73_RS05090 (1022017) | 1022017..1022223 | - | 207 | WP_000233576.1 | phage encoded cell division inhibitor protein | - |
| LGV73_RS05095 (1022704) | 1022704..1023084 | - | 381 | WP_001226568.1 | outer membrane protein assembly factor BamE | - |
| LGV73_RS05100 (1023314) | 1023314..1024003 | - | 690 | WP_000858975.1 | helix-turn-helix transcriptional regulator | - |
| LGV73_RS05105 (1024108) | 1024108..1024338 | + | 231 | WP_001067459.1 | helix-turn-helix domain-containing protein | - |
| LGV73_RS05110 (1024408) | 1024408..1024947 | + | 540 | WP_272606635.1 | toxin YdaT domain-containing protein | - |
| LGV73_RS05115 (1024944) | 1024944..1025963 | + | 1020 | WP_113410946.1 | replication protein | - |
| LGV73_RS05120 (1025960) | 1025960..1026661 | + | 702 | WP_272606636.1 | replication protein P | - |
| LGV73_RS05125 (1026658) | 1026658..1026828 | + | 171 | Protein_1005 | protein ren | - |
| LGV73_RS05130 (1026978) | 1026978..1027472 | + | 495 | WP_001224618.1 | type VI secretion system-associated protein TagO | - |
| LGV73_RS05135 (1028410) | 1028410..1028511 | + | 102 | WP_001309322.1 | hypothetical protein | - |
| LGV73_RS05140 (1028508) | 1028508..1028963 | + | 456 | WP_097466917.1 | DNA base-flipping protein YbcN | - |
| LGV73_RS05145 (1028963) | 1028963..1029133 | + | 171 | WP_000211034.1 | NinE family protein | - |
| LGV73_RS05150 (1029126) | 1029126..1029416 | + | 291 | WP_032176362.1 | DUF1364 domain-containing protein | - |
| LGV73_RS05155 (1029413) | 1029413..1029775 | + | 363 | WP_129468639.1 | crossover junction endodeoxyribonuclease RusA | - |
| LGV73_RS05160 (1029772) | 1029772..1029912 | + | 141 | WP_001568558.1 | YlcG family protein | - |
| LGV73_RS05165 (1029909) | 1029909..1030598 | + | 690 | WP_029396340.1 | bacteriophage antitermination protein Q | - |
| LGV73_RS05170 (1030920) | 1030920..1031225 | + | 306 | WP_000544528.1 | phage holin family protein | - |
| LGV73_RS05175 (1031212) | 1031212..1031688 | + | 477 | WP_029396339.1 | glycoside hydrolase family protein | - |
| LGV73_RS05180 (1031685) | 1031685..1032128 | + | 444 | WP_089578276.1 | lysis protein | - |
| LGV73_RS05185 (1032167) | 1032167..1032541 | + | 375 | WP_029396337.1 | hypothetical protein | - |
| LGV73_RS05190 (1032659) | 1032659..1032862 | + | 204 | WP_000699783.1 | hypothetical protein | - |
| LGV73_RS05195 (1032928) | 1032928..1033278 | + | 351 | WP_001135206.1 | HNH endonuclease signature motif containing protein | - |
| LGV73_RS05200 (1033404) | 1033404..1033898 | + | 495 | WP_000929171.1 | phage terminase small subunit P27 family | - |
| LGV73_RS05205 (1033895) | 1033895..1035628 | + | 1734 | WP_000088154.1 | terminase large subunit | - |
| LGV73_RS05210 (1035640) | 1035640..1035822 | + | 183 | WP_000605606.1 | protein YmfR | - |
| LGV73_RS05215 (1035822) | 1035822..1037063 | + | 1242 | WP_001524100.1 | phage portal protein | - |
| LGV73_RS05220 (1037041) | 1037041..1037691 | + | 651 | WP_001193631.1 | HK97 family phage prohead protease | - |
| LGV73_RS05225 (1037706) | 1037706..1038911 | + | 1206 | WP_000257507.1 | phage major capsid protein | - |
| LGV73_RS05230 (1038961) | 1038961..1039161 | + | 201 | Protein_1026 | hypothetical protein | - |
| LGV73_RS05235 (1039164) | 1039164..1039487 | + | 324 | WP_000927711.1 | head-tail connector protein | - |
| LGV73_RS05240 (1039484) | 1039484..1039894 | + | 411 | WP_001524103.1 | phage head closure protein | - |
| LGV73_RS05245 (1039869) | 1039869..1040375 | + | 507 | WP_000224835.1 | hypothetical protein | - |
| LGV73_RS05250 (1040372) | 1040372..1040932 | + | 561 | WP_001569335.1 | hypothetical protein | - |
| LGV73_RS05255 (1040941) | 1040941..1041111 | + | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| LGV73_RS05260 (1041095) | 1041095..1042591 | + | 1497 | WP_016159274.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| LGV73_RS05265 (1042591) | 1042591..1042947 | + | 357 | WP_000090998.1 | phage tail tube protein | - |
| LGV73_RS05270 (1042944) | 1042944..1043267 | + | 324 | WP_000571712.1 | phage tail assembly protein | - |
| LGV73_RS05275 (1043352) | 1043352..1045259 | + | 1908 | WP_016159273.1 | phage tail tape measure protein | - |
| LGV73_RS05280 (1045284) | 1045284..1046660 | + | 1377 | WP_016159272.1 | DNA circularization N-terminal domain-containing protein | - |
| LGV73_RS05285 (1046657) | 1046657..1047736 | + | 1080 | WP_000999527.1 | baseplate protein | - |
| LGV73_RS05290 (1047736) | 1047736..1048284 | + | 549 | WP_001259067.1 | phage baseplate assembly protein V | - |
| LGV73_RS05295 (1048284) | 1048284..1048709 | + | 426 | WP_000424732.1 | phage GP46 family protein | - |
| LGV73_RS05300 (1048696) | 1048696..1049754 | + | 1059 | WP_016159271.1 | baseplate J/gp47 family protein | - |
| LGV73_RS05305 (1049745) | 1049745..1050329 | + | 585 | WP_272606637.1 | YmfQ family protein | - |
| LGV73_RS05310 (1050333) | 1050333..1050983 | + | 651 | WP_272606638.1 | hypothetical protein | - |
| LGV73_RS05315 (1050955) | 1050955..1051389 | + | 435 | WP_001223322.1 | tail fiber assembly protein | - |
| LGV73_RS05320 (1052162) | 1052162..1053210 | - | 1049 | Protein_1044 | acyltransferase family protein | - |
| LGV73_RS05325 (1053661) | 1053661..1054851 | + | 1191 | WP_016159268.1 | IS4 family transposase ISSfl9 | Transposase |
| LGV73_RS05330 (1055241) | 1055241..1056701 | - | 1461 | WP_016159267.1 | hypothetical protein | VF |
| LGV73_RS05335 (1056698) | 1056698..1057627 | - | 930 | WP_016159266.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| LGV73_RS05340 (1057624) | 1057624..1057986 | - | 363 | WP_000915847.1 | hypothetical protein | VF |
| LGV73_RS05345 (1058248) | 1058248..1059303 | - | 1056 | Protein_1049 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LGV73_RS05355 (1060559) | 1060559..1060675 | - | 117 | Protein_1051 | integrase | - |
| LGV73_RS05360 (1060805) | 1060805..1060971 | - | 167 | Protein_1052 | DNA-binding protein | - |
| LGV73_RS05365 (1060999) | 1060999..1061343 | - | 345 | WP_032187531.1 | hypothetical protein | - |
| LGV73_RS05370 (1061370) | 1061370..1061537 | - | 168 | WP_047578147.1 | hypothetical protein | - |
| LGV73_RS05375 (1061638) | 1061638..1062171 | - | 534 | WP_047578150.1 | DUF551 domain-containing protein | - |
| LGV73_RS05380 (1062168) | 1062168..1062704 | - | 537 | WP_272606678.1 | ead/Ea22-like family protein | - |
| LGV73_RS05390 (1063891) | 1063891..1064877 | + | 987 | WP_272606640.1 | hypothetical protein | - |
| LGV73_RS05395 (1064944) | 1064944..1066209 | - | 1266 | WP_000688544.1 | hypothetical protein | - |
| LGV73_RS05400 (1066222) | 1066222..1067139 | - | 918 | WP_000703648.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| LGV73_RS05405 (1067136) | 1067136..1067498 | - | 363 | WP_000915539.1 | bactoprenol glucosyl transferase | - |
| LGV73_RS05410 (1067848) | 1067848..1068204 | - | 357 | Protein_1062 | integrase | - |
| LGV73_RS05420 (1069569) | 1069569..1070778 | + | 1210 | Protein_1064 | IS3 family transposase IS629 | Transposase |
| LGV73_RS05425 (1070917) | 1070917..1072032 | + | 1116 | WP_005053118.1 | diguanylate cyclase AdrA | - |
| LGV73_RS05430 (1072049) | 1072049..1072858 | - | 810 | WP_001295331.1 | pyrroline-5-carboxylate reductase | - |
| LGV73_RS05435 (1072978) | 1072978..1073436 | + | 459 | WP_000158164.1 | YaiI/YqxD family protein | - |
| LGV73_RS05440 (1073619) | 1073619..1074143 | + | 525 | WP_000193385.1 | shikimate kinase AroL | - |
| LGV73_RS05445 (1074193) | 1074193..1074381 | + | 189 | WP_001142438.1 | protein YaiA | - |
| LGV73_RS05450 (1074642) | 1074642..1075319 | + | 678 | WP_001276420.1 | AroM family protein | - |
| LGV73_RS05455 (1075391) | 1075391..1075675 | + | 285 | WP_000941942.1 | pyrimidine/purine nucleoside phosphorylase | - |
| LGV73_RS05460 (1075830) | 1075830..1076165 | + | 336 | Protein_1072 | DUF2773 domain-containing protein | - |
| LGV73_RS05465 (1076162) | 1076162..1076617 | + | 456 | WP_000194195.1 | hypothetical protein | - |
| LGV73_RS05470 (1076695) | 1076695..1077606 | - | 912 | WP_005053105.1 | recombination-associated protein RdgC | - |
| LGV73_RS05475 (1077731) | 1077731..1078639 | + | 909 | WP_001219335.1 | fructokinase | - |
| LGV73_RS05480 (1078782) | 1078782..1079963 | - | 1182 | WP_005053102.1 | MFS transporter AraJ | - |
| LGV73_RS05485 (1080089) | 1080089..1083232 | - | 3144 | WP_000698962.1 | exonuclease subunit SbcC | - |
| LGV73_RS05490 (1083229) | 1083229..1084431 | - | 1203 | WP_001221305.1 | exonuclease subunit SbcD | - |
| LGV73_RS05495 (1084621) | 1084621..1085310 | + | 690 | WP_000113937.1 | phosphate response regulator transcription factor PhoB | - |
| LGV73_RS05500 (1085368) | 1085368..1086663 | + | 1296 | WP_000893611.1 | phosphate regulon sensor histidine kinase PhoR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|