NZ_CP084879924739..1078639

MGE detailed information

MGE type: Prophage        MGE length: 153901 bp
Accession: NZ_CP084879        Location: 924739..1078639         Organism: Shigella flexneri strain CMCC51574       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LGV73_RS04490 (920183) 920183..921901 - 1719 WP_001260712.1 proline--tRNA ligase -
LGV73_RS04495 (922012) 922012..922719 - 708 WP_000094030.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
LGV73_RS04500 (922716) 922716..923120 - 405 WP_001202325.1 Rcs stress response system protein RcsF -
LGV73_RS04505 (923238) 923238..924053 - 816 WP_000874221.1 methionine ABC transporter substrate-binding lipoprotein MetQ -
LGV73_RS04510 (924093) 924093..924746 - 654 WP_001294596.1 methionine ABC transporter permease MetI -
LGV73_RS04515 (924739) 924739..925770 - 1032 WP_000593997.1 Vitamin B12 import ATP-binding protein BtuD VF
LGV73_RS04520 (925958) 925958..926533 + 576 WP_001140187.1 Histidine biosynthesis bifunctional protein HisB VF
LGV73_RS04555 (932293) 932293..933096 + 804 WP_000997035.1 2,5-didehydrogluconate reductase DkgB -
LGV73_RS04560 (933135) 933135..934481 - 1347 WP_000483770.1 IS4 family transposase IS4 Transposase
LGV73_RS04565 (934531) 934531..935445 - 915 WP_000648578.1 HTH-type transcriptional regulator ArgP VF
LGV73_RS04570 (935686) 935686..936486 + 801 WP_001230983.1 endonuclease/exonuclease/phosphatase family protein -
LGV73_RS04575 (936564) 936564..937334 + 771 WP_000211683.1 class I SAM-dependent methyltransferase -
LGV73_RS04580 (937382) 937382..938740 - 1359 WP_000644678.1 hypothetical protein VF
LGV73_RS04585 (938812) 938812..939567 - 756 WP_001052754.1 hydroxyacylglutathione hydrolase -
LGV73_RS04590 (939601) 939601..940323 + 723 WP_005060310.1 class I SAM-dependent methyltransferase -
LGV73_RS04595 (940320) 940320..940787 - 468 WP_000917883.1 ribonuclease HI -
LGV73_RS04600 (940852) 940852..941583 + 732 WP_001366128.1 DNA polymerase III subunit epsilon -
LGV73_RS04610 (941923) 941923..942969 - 1047 WP_000402248.1 hypothetical protein VF
LGV73_RS04615 (942980) 942980..943965 - 986 Protein_904 hypothetical protein VF
LGV73_RS04620 (943962) 943962..945845 - 1884 WP_000371479.1 type VI secretion system baseplate subunit TssF -
LGV73_RS04625 (945861) 945861..946355 - 495 WP_001276640.1 hypothetical protein VF
LGV73_RS04630 (946352) 946352..947182 - 831 Protein_907 hypothetical protein VF
LGV73_RS04635 (947169) 947169..947732 - 564 WP_232046051.1 type VI secretion system-associated protein TagK -
LGV73_RS04640 (947784) 947784..948083 - 300 WP_000804009.1 FHA domain-containing protein -
LGV73_RS04645 (948181) 948181..949409 + 1229 Protein_910 IS3-like element IS2 family transposase -
LGV73_RS04650 (949466) 949466..949753 - 288 WP_000343116.1 hypothetical protein -
LGV73_RS04655 (949835) 949835..949975 - 141 Protein_912 lysis protein -
LGV73_RS04660 (950055) 950055..951223 + 1169 Protein_913 IS3 family transposase ISLad1 Transposase
LGV73_RS04665 (951180) 951180..951965 + 786 WP_272606677.1 tail needle knob protein -
LGV73_RS04670 (951965) 951965..952420 + 456 WP_005124997.1 DUF2824 family protein -
LGV73_RS04675 (952423) 952423..953115 + 693 WP_000964877.1 DNA transfer protein -
LGV73_RS04680 (953125) 953125..954456 + 1332 Protein_917 phage DNA ejection protein -
LGV73_RS04685 (954457) 954457..956187 + 1731 WP_005124999.1 lytic transglycosylase domain-containing protein -
LGV73_RS04690 (956313) 956313..957522 + 1210 Protein_919 IS3 family transposase IS629 Transposase
LGV73_RS04695 (957573) 957573..957893 - 321 WP_005053289.1 phosphate starvation-inducible protein PsiF -
LGV73_RS04700 (958012) 958012..959427 - 1416 WP_000814400.1 alkaline phosphatase -
LGV73_RS04705 (959528) 959528..959788 - 261 WP_000792969.1 anti-adapter protein IraP -
LGV73_RS04710 (959970) 959970..960173 - 204 WP_023517632.1 hypothetical protein -
LGV73_RS04715 (960251) 960251..961345 + 1095 WP_025745172.1 D-alanine--D-alanine ligase -
LGV73_RS04720 (961369) 961369..961581 - 213 WP_001599861.1 DUF2754 domain-containing protein -
LGV73_RS04725 (961841) 961841..962149 + 309 WP_000763148.1 YaiY family protein -
LGV73_RS04730 (962208) 962208..963302 - 1095 WP_000092054.1 surface-exposed outer membrane lipoprotein YaiW -
LGV73_RS04735 (963315) 963315..964535 - 1221 WP_001342332.1 peptide antibiotic transporter SbmA -
LGV73_RS04740 (964887) 964887..966044 + 1158 WP_000830735.1 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH -
LGV73_RS04745 (966045) 966045..966548 - 504 WP_000953938.1 helix-turn-helix domain-containing protein -
LGV73_RS04750 (966636) 966636..967163 - 528 Protein_931 autotransporter outer membrane beta-barrel domain-containing protein -
LGV73_RS04755 (967183) 967183..968229 - 1047 Protein_932 IS3 family transposase ISEhe3 Transposase
LGV73_RS04765 (969491) 969491..969598 - 108 Protein_934 IS3 family transposase ISEhe3 Transposase
LGV73_RS04770 (969662) 969662..970195 - 534 Protein_935 autotransporter outer membrane beta-barrel domain-containing protein -
LGV73_RS04775 (970203) 970203..971431 - 1229 Protein_936 IS3-like element IS2 family transposase -
LGV73_RS04780 (971555) 971555..972252 + 698 WP_227804315.1 IS1 family transposase IS1X2 Transposase
LGV73_RS04785 (972300) 972300..972668 - 369 Protein_938 autotransporter outer membrane beta-barrel domain-containing protein -
LGV73_RS04790 (973192) 973192..974166 + 975 WP_001295337.1 porphobilinogen synthase -
LGV73_RS04795 (974272) 974272..975123 - 852 WP_000004031.1 taurine dioxygenase -
LGV73_RS04800 (975120) 975120..975947 - 828 WP_000114607.1 taurine ABC transporter permease TauC -
LGV73_RS04805 (975944) 975944..976711 - 768 WP_000939367.1 Vitamin B12 import ATP-binding protein BtuD VF
LGV73_RS04810 (976724) 976724..977650 - 927 WP_045177322.1 taurine ABC transporter substrate-binding protein -
LGV73_RS04815 (977917) 977917..978162 - 246 Protein_944 hypothetical protein -
LGV73_RS04825 (979020) 979020..979687 + 668 Protein_946 protein YkgH -
LGV73_RS04830 (979930) 979930..980625 - 696 WP_000370403.1 lactate utilization protein C -
LGV73_RS04835 (980618) 980618..982045 - 1428 WP_000023933.1 LutB/LldF family L-lactate oxidation iron-sulfur protein -
LGV73_RS04840 (982056) 982056..982775 - 720 WP_001102097.1 (Fe-S)-binding protein -
LGV73_RS04845 (983194) 983194..983891 + 698 WP_272606632.1 IS1 family transposase IS1X2 Transposase
LGV73_RS04850 (984076) 984076..984561 + 486 WP_001201711.1 hypothetical protein -
LGV73_RS04855 (984558) 984558..984944 + 387 WP_000667623.1 hypothetical protein -
LGV73_RS04860 (984969) 984969..987170 + 2202 WP_272606633.1 hypothetical protein VF
LGV73_RS04865 (987193) 987193..987393 + 201 WP_241558739.1 DcrB-related protein -
LGV73_RS04870 (987426) 987426..987638 + 213 WP_075332543.1 DcrB-related protein -
LGV73_RS04875 (987660) 987660..988067 + 408 WP_005053237.1 PAAR domain-containing protein -
LGV73_RS04880 (988064) 988064..990541 + 2478 WP_000568702.1 DUF6531 domain-containing protein -
LGV73_RS04885 (990538) 990538..991527 + 990 WP_005053234.1 hypothetical protein VF
LGV73_RS04890 (991627) 991627..991830 + 204 WP_128567422.1 hypothetical protein -
LGV73_RS04895 (991932) 991932..992168 + 237 WP_032320155.1 hypothetical protein -
LGV73_RS04900 (992234) 992234..992466 - 233 Protein_961 SymE family type I addiction module toxin -
LGV73_RS04905 (992576) 992576..993346 - 771 WP_001139559.1 2-oxoglutaramate amidase -
LGV73_RS04910 (993527) 993527..993973 + 447 WP_005100645.1 Ivy family C-type lysozyme inhibitor -
LGV73_RS04915 (994016) 994016..996460 - 2445 WP_025746263.1 hypothetical protein VF
LGV73_RS04920 (996700) 996700..997278 + 579 WP_000284050.1 Phosphoheptose isomerase VF
LGV73_RS04925 (997484) 997484..998251 + 768 WP_000333379.1 class II glutamine amidotransferase -
LGV73_RS04930 (998222) 998222..998962 - 741 WP_001225676.1 peptidoglycan meso-diaminopimelic acid protein amidase -
LGV73_RS04935 (999346) 999346..999867 + 522 Protein_968 hypothetical protein VF
LGV73_RS04940 (1000043) 1000043..1000540 + 498 WP_000006251.1 REP-associated tyrosine transposase RayT -
LGV73_RS04945 (1000757) 1000757..1002469 - 1713 Protein_970 hypothetical protein VF
LGV73_RS04950 (1002441) 1002441..1003226 + 786 WP_000207561.1 hypothetical protein VF
LGV73_RS04955 (1003297) 1003297..1004352 + 1056 WP_001226172.1 DNA polymerase IV -
LGV73_RS04960 (1004404) 1004404..1004697 + 294 WP_000554759.1 type I toxin-antitoxin system antitoxin YafN Antitoxin Detail
LGV73_RS04965 (1004700) 1004700..1005098 + 399 WP_001263491.1 type II toxin-antitoxin system mRNA interferase toxin YafO Toxin Detail
LGV73_RS04970 (1005108) 1005108..1005560 + 453 WP_001059861.1 GNAT family N-acetyltransferase -
LGV73_RS04975 (1005806) 1005806..1006849 + 1044 WP_005060486.1 RNA ligase RtcB family protein -
LGV73_RS04980 (1006965) 1006965..1007525 + 561 Protein_977 peptide chain release factor H -
LGV73_RS04985 (1007582) 1007582..1009039 - 1458 WP_001293009.1 cytosol nonspecific dipeptidase -
LGV73_RS04990 (1009301) 1009301..1009759 + 459 WP_001291990.1 xanthine phosphoribosyltransferase -
- (1010355) 1010355..1010435 + 81 NuclAT_9 - -
- (1010355) 1010355..1010435 + 81 NuclAT_9 - -
- (1010355) 1010355..1010435 + 81 NuclAT_9 - -
- (1010355) 1010355..1010435 + 81 NuclAT_9 - -
LGV73_RS04995 (1009851) 1009851..1011095 + 1245 WP_000189558.1 esterase FrsA -
LGV73_RS05000 (1011153) 1011153..1011554 + 402 WP_000174678.1 sigma factor-binding protein Crl -
LGV73_RS05005 (1011593) 1011593..1012648 - 1056 WP_000749864.1 phosphoporin PhoE -
LGV73_RS05010 (1012824) 1012824..1013521 + 698 WP_225620329.1 IS1 family transposase IS1X2 Transposase
LGV73_RS05015 (1013712) 1013712..1014815 + 1104 WP_001285281.1 glutamate 5-kinase -
LGV73_RS05020 (1014827) 1014827..1016080 + 1254 WP_272606634.1 glutamate-5-semialdehyde dehydrogenase -
LGV73_RS05030 (1016285) 1016285..1017403 - 1119 WP_223716396.1 Tyrosine recombinase XerD ; Integrase Integrase
LGV73_RS05035 (1017325) 1017325..1017675 - 351 WP_000446902.1 helix-turn-helix domain-containing protein -
LGV73_RS05040 (1017647) 1017647..1017925 - 279 WP_000488407.1 DUF4222 domain-containing protein -
LGV73_RS05045 (1017973) 1017973..1018191 - 219 WP_000763364.1 TraR/DksA family transcriptional regulator -
LGV73_RS05050 (1018290) 1018290..1018505 - 216 WP_000188870.1 hypothetical protein -
LGV73_RS05055 (1018582) 1018582..1018773 - 192 WP_000548531.1 DUF1382 family protein -
LGV73_RS05060 (1018746) 1018746..1018928 - 183 WP_000682306.1 DUF1317 domain-containing protein -
LGV73_RS05065 (1018925) 1018925..1019605 - 681 WP_000186779.1 YqaJ viral recombinase family protein -
LGV73_RS05070 (1019602) 1019602..1020033 - 432 Protein_994 recombinase RecT -
LGV73_RS05075 (1020042) 1020042..1021210 - 1169 Protein_995 IS3 family transposase ISLad1 Transposase
LGV73_RS05080 (1021283) 1021283..1021639 - 357 Protein_996 phage recombination protein Bet -
LGV73_RS05085 (1021645) 1021645..1021941 - 297 WP_032084545.1 host-nuclease inhibitor Gam family protein -
LGV73_RS05090 (1022017) 1022017..1022223 - 207 WP_000233576.1 phage encoded cell division inhibitor protein -
LGV73_RS05095 (1022704) 1022704..1023084 - 381 WP_001226568.1 outer membrane protein assembly factor BamE -
LGV73_RS05100 (1023314) 1023314..1024003 - 690 WP_000858975.1 helix-turn-helix transcriptional regulator -
LGV73_RS05105 (1024108) 1024108..1024338 + 231 WP_001067459.1 helix-turn-helix domain-containing protein -
LGV73_RS05110 (1024408) 1024408..1024947 + 540 WP_272606635.1 toxin YdaT domain-containing protein -
LGV73_RS05115 (1024944) 1024944..1025963 + 1020 WP_113410946.1 replication protein -
LGV73_RS05120 (1025960) 1025960..1026661 + 702 WP_272606636.1 replication protein P -
LGV73_RS05125 (1026658) 1026658..1026828 + 171 Protein_1005 protein ren -
LGV73_RS05130 (1026978) 1026978..1027472 + 495 WP_001224618.1 type VI secretion system-associated protein TagO -
LGV73_RS05135 (1028410) 1028410..1028511 + 102 WP_001309322.1 hypothetical protein -
LGV73_RS05140 (1028508) 1028508..1028963 + 456 WP_097466917.1 DNA base-flipping protein YbcN -
LGV73_RS05145 (1028963) 1028963..1029133 + 171 WP_000211034.1 NinE family protein -
LGV73_RS05150 (1029126) 1029126..1029416 + 291 WP_032176362.1 DUF1364 domain-containing protein -
LGV73_RS05155 (1029413) 1029413..1029775 + 363 WP_129468639.1 crossover junction endodeoxyribonuclease RusA -
LGV73_RS05160 (1029772) 1029772..1029912 + 141 WP_001568558.1 YlcG family protein -
LGV73_RS05165 (1029909) 1029909..1030598 + 690 WP_029396340.1 bacteriophage antitermination protein Q -
LGV73_RS05170 (1030920) 1030920..1031225 + 306 WP_000544528.1 phage holin family protein -
LGV73_RS05175 (1031212) 1031212..1031688 + 477 WP_029396339.1 glycoside hydrolase family protein -
LGV73_RS05180 (1031685) 1031685..1032128 + 444 WP_089578276.1 lysis protein -
LGV73_RS05185 (1032167) 1032167..1032541 + 375 WP_029396337.1 hypothetical protein -
LGV73_RS05190 (1032659) 1032659..1032862 + 204 WP_000699783.1 hypothetical protein -
LGV73_RS05195 (1032928) 1032928..1033278 + 351 WP_001135206.1 HNH endonuclease signature motif containing protein -
LGV73_RS05200 (1033404) 1033404..1033898 + 495 WP_000929171.1 phage terminase small subunit P27 family -
LGV73_RS05205 (1033895) 1033895..1035628 + 1734 WP_000088154.1 terminase large subunit -
LGV73_RS05210 (1035640) 1035640..1035822 + 183 WP_000605606.1 protein YmfR -
LGV73_RS05215 (1035822) 1035822..1037063 + 1242 WP_001524100.1 phage portal protein -
LGV73_RS05220 (1037041) 1037041..1037691 + 651 WP_001193631.1 HK97 family phage prohead protease -
LGV73_RS05225 (1037706) 1037706..1038911 + 1206 WP_000257507.1 phage major capsid protein -
LGV73_RS05230 (1038961) 1038961..1039161 + 201 Protein_1026 hypothetical protein -
LGV73_RS05235 (1039164) 1039164..1039487 + 324 WP_000927711.1 head-tail connector protein -
LGV73_RS05240 (1039484) 1039484..1039894 + 411 WP_001524103.1 phage head closure protein -
LGV73_RS05245 (1039869) 1039869..1040375 + 507 WP_000224835.1 hypothetical protein -
LGV73_RS05250 (1040372) 1040372..1040932 + 561 WP_001569335.1 hypothetical protein -
LGV73_RS05255 (1040941) 1040941..1041111 + 171 WP_000497751.1 DUF2635 domain-containing protein -
LGV73_RS05260 (1041095) 1041095..1042591 + 1497 WP_016159274.1 phage tail sheath subtilisin-like domain-containing protein -
LGV73_RS05265 (1042591) 1042591..1042947 + 357 WP_000090998.1 phage tail tube protein -
LGV73_RS05270 (1042944) 1042944..1043267 + 324 WP_000571712.1 phage tail assembly protein -
LGV73_RS05275 (1043352) 1043352..1045259 + 1908 WP_016159273.1 phage tail tape measure protein -
LGV73_RS05280 (1045284) 1045284..1046660 + 1377 WP_016159272.1 DNA circularization N-terminal domain-containing protein -
LGV73_RS05285 (1046657) 1046657..1047736 + 1080 WP_000999527.1 baseplate protein -
LGV73_RS05290 (1047736) 1047736..1048284 + 549 WP_001259067.1 phage baseplate assembly protein V -
LGV73_RS05295 (1048284) 1048284..1048709 + 426 WP_000424732.1 phage GP46 family protein -
LGV73_RS05300 (1048696) 1048696..1049754 + 1059 WP_016159271.1 baseplate J/gp47 family protein -
LGV73_RS05305 (1049745) 1049745..1050329 + 585 WP_272606637.1 YmfQ family protein -
LGV73_RS05310 (1050333) 1050333..1050983 + 651 WP_272606638.1 hypothetical protein -
LGV73_RS05315 (1050955) 1050955..1051389 + 435 WP_001223322.1 tail fiber assembly protein -
LGV73_RS05320 (1052162) 1052162..1053210 - 1049 Protein_1044 acyltransferase family protein -
LGV73_RS05325 (1053661) 1053661..1054851 + 1191 WP_016159268.1 IS4 family transposase ISSfl9 Transposase
LGV73_RS05330 (1055241) 1055241..1056701 - 1461 WP_016159267.1 hypothetical protein VF
LGV73_RS05335 (1056698) 1056698..1057627 - 930 WP_016159266.1 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase VF
LGV73_RS05340 (1057624) 1057624..1057986 - 363 WP_000915847.1 hypothetical protein VF
LGV73_RS05345 (1058248) 1058248..1059303 - 1056 Protein_1049 Tyrosine recombinase XerC ; Integrase Integrase
LGV73_RS05355 (1060559) 1060559..1060675 - 117 Protein_1051 integrase -
LGV73_RS05360 (1060805) 1060805..1060971 - 167 Protein_1052 DNA-binding protein -
LGV73_RS05365 (1060999) 1060999..1061343 - 345 WP_032187531.1 hypothetical protein -
LGV73_RS05370 (1061370) 1061370..1061537 - 168 WP_047578147.1 hypothetical protein -
LGV73_RS05375 (1061638) 1061638..1062171 - 534 WP_047578150.1 DUF551 domain-containing protein -
LGV73_RS05380 (1062168) 1062168..1062704 - 537 WP_272606678.1 ead/Ea22-like family protein -
LGV73_RS05390 (1063891) 1063891..1064877 + 987 WP_272606640.1 hypothetical protein -
LGV73_RS05395 (1064944) 1064944..1066209 - 1266 WP_000688544.1 hypothetical protein -
LGV73_RS05400 (1066222) 1066222..1067139 - 918 WP_000703648.1 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase VF
LGV73_RS05405 (1067136) 1067136..1067498 - 363 WP_000915539.1 bactoprenol glucosyl transferase -
LGV73_RS05410 (1067848) 1067848..1068204 - 357 Protein_1062 integrase -
LGV73_RS05420 (1069569) 1069569..1070778 + 1210 Protein_1064 IS3 family transposase IS629 Transposase
LGV73_RS05425 (1070917) 1070917..1072032 + 1116 WP_005053118.1 diguanylate cyclase AdrA -
LGV73_RS05430 (1072049) 1072049..1072858 - 810 WP_001295331.1 pyrroline-5-carboxylate reductase -
LGV73_RS05435 (1072978) 1072978..1073436 + 459 WP_000158164.1 YaiI/YqxD family protein -
LGV73_RS05440 (1073619) 1073619..1074143 + 525 WP_000193385.1 shikimate kinase AroL -
LGV73_RS05445 (1074193) 1074193..1074381 + 189 WP_001142438.1 protein YaiA -
LGV73_RS05450 (1074642) 1074642..1075319 + 678 WP_001276420.1 AroM family protein -
LGV73_RS05455 (1075391) 1075391..1075675 + 285 WP_000941942.1 pyrimidine/purine nucleoside phosphorylase -
LGV73_RS05460 (1075830) 1075830..1076165 + 336 Protein_1072 DUF2773 domain-containing protein -
LGV73_RS05465 (1076162) 1076162..1076617 + 456 WP_000194195.1 hypothetical protein -
LGV73_RS05470 (1076695) 1076695..1077606 - 912 WP_005053105.1 recombination-associated protein RdgC -
LGV73_RS05475 (1077731) 1077731..1078639 + 909 WP_001219335.1 fructokinase -
LGV73_RS05480 (1078782) 1078782..1079963 - 1182 WP_005053102.1 MFS transporter AraJ -
LGV73_RS05485 (1080089) 1080089..1083232 - 3144 WP_000698962.1 exonuclease subunit SbcC -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance