MGE detailed information
MGE type: Prophage MGE length: 61039 bp
Accession: NZ_CP084879 Location: 2700682..2761720 Organism: Shigella flexneri strain CMCC51574 Replicon: chromosome
Accession: NZ_CP084879 Location: 2700682..2761720 Organism: Shigella flexneri strain CMCC51574 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGV73_RS13945 () | 2696106..2697800 | - | 1695 | Protein_2725 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
| LGV73_RS13950 () | 2697971..2698153 | - | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| LGV73_RS13955 () | 2698232..2699149 | - | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| LGV73_RS13960 () | 2699322..2700242 | + | 921 | WP_272606566.1 | drug/metabolite exporter YedA | - |
| LGV73_RS13965 () | 2700231..2700701 | - | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| LGV73_RS13970 () | 2700682..2702100 | - | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| LGV73_RS13975 () | 2702167..2702707 | - | 541 | Protein_2731 | phosphohydrolase | - |
| LGV73_RS13980 () | 2702747..2703004 | - | 258 | WP_032155863.1 | cell division protein DrpB | - |
| LGV73_RS13990 () | 2704218..2704982 | + | 765 | Protein_2734 | porin | - |
| LGV73_RS14000 () | 2706313..2706492 | + | 180 | Protein_2736 | porin | - |
| LGV73_RS14005 () | 2707120..2707817 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| LGV73_RS14010 () | 2707829..2708776 | - | 948 | Protein_2738 | two-component system sensor histidine kinase HprS | - |
| LGV73_RS14015 () | 2708776..2709447 | - | 672 | WP_001347103.1 | Sensor histidine kinase RcsC | VF |
| LGV73_RS14020 () | 2709580..2709993 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| LGV73_RS14025 () | 2710102..2711106 | + | 1005 | Protein_2741 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| LGV73_RS14030 () | 2711107..2711742 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| LGV73_RS14035 () | 2712000..2712650 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| LGV73_RS14040 () | 2713728..2713997 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| LGV73_RS14045 () | 2714054..2714722 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| LGV73_RS14050 () | 2715038..2716681 | + | 1644 | WP_011110600.1 | hypothetical protein | VF |
| LGV73_RS14055 () | 2716861..2717340 | - | 480 | Protein_2747 | DUF4376 domain-containing protein | - |
| LGV73_RS14060 () | 2717381..2718238 | - | 858 | Protein_2748 | IS3 family transposase ISSd1 | Transposase |
| LGV73_RS14065 () | 2718296..2718993 | + | 698 | WP_227804319.1 | IS1 family transposase IS1X2 | Transposase |
| LGV73_RS14070 () | 2719005..2719196 | - | 192 | Protein_2750 | IS66 family transposase ISSfl3 | Transposase |
| LGV73_RS14075 () | 2719295..2719510 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| LGV73_RS14100 () | 2720306..2720994 | - | 689 | Protein_2752 | bacteriophage antitermination protein Q | - |
| LGV73_RS14105 () | 2720991..2721356 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LGV73_RS14110 () | 2721357..2722415 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| LGV73_RS14115 () | 2722417..2722695 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| LGV73_RS14120 () | 2722863..2723018 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2723030..2723088 | + | 59 | - | - | Antitoxin Detail |
| LGV73_RS14125 () | 2723670..2724086 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| LGV73_RS14130 () | 2724113..2724253 | + | 141 | Protein_2758 | DUF4224 domain-containing protein | - |
| LGV73_RS14135 () | 2724253..2725303 | + | 1051 | Protein_2759 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LGV73_RS14145 () | 2725514..2726311 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| LGV73_RS14155 () | 2726649..2727911 | + | 1263 | Protein_2761 | hypothetical protein ; Integrase | Integrase |
| LGV73_RS14160 () | 2728018..2729186 | - | 1169 | Protein_2762 | IS3 family transposase ISLad1 | Transposase |
| LGV73_RS14165 () | 2729242..2729748 | + | 507 | Protein_2763 | MFS transporter | - |
| LGV73_RS14170 () | 2729813..2731012 | + | 1200 | Protein_2764 | IS3 family transposase IS600 | Transposase |
| LGV73_RS14175 () | 2731013..2731219 | + | 207 | WP_000466572.1 | hypothetical protein | - |
| LGV73_RS14180 () | 2731321..2732775 | + | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| LGV73_RS14185 () | 2733118..2733834 | + | 717 | WP_272606567.1 | transcriptional regulatory protein YeeN | VF |
| LGV73_RS14195 () | 2734466..2736093 | - | 1628 | Protein_2768 | toxic metabolite efflux MATE transporter YeeO | - |
| LGV73_RS14205 () | 2736211..2737161 | - | 951 | WP_001010988.1 | HTH-type transcriptional regulator Cbl | - |
| LGV73_RS14210 () | 2737263..2738180 | - | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| LGV73_RS14220 () | 2738639..2739574 | - | 936 | WP_000986346.1 | L,D-transpeptidase | - |
| LGV73_RS14225 () | 2739636..2740715 | - | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| LGV73_RS14230 () | 2740727..2741470 | - | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| LGV73_RS14235 () | 2741467..2741976 | - | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| LGV73_RS14240 () | 2741988..2743144 | - | 1157 | Protein_2775 | IS3 family transposase IS600 | Transposase |
| LGV73_RS14245 () | 2743387..2744582 | + | 1196 | Protein_2776 | IS3 family transposase | - |
| LGV73_RS14250 () | 2744960..2745106 | - | 147 | Protein_2777 | transposase domain-containing protein | - |
| LGV73_RS14255 () | 2745208..2745342 | + | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| LGV73_RS14260 () | 2745443..2745772 | - | 330 | WP_000450409.1 | DUF496 family protein | - |
| LGV73_RS14265 () | 2745944..2746228 | - | 285 | Protein_2780 | hypothetical protein | - |
| LGV73_RS14270 () | 2746313..2746987 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| LGV73_RS14275 () | 2746984..2747334 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| LGV73_RS14280 () | 2747331..2748236 | + | 906 | Protein_2783 | IS66 family transposase ISSfl3 | Transposase |
| LGV73_RS14285 () | 2748325..2749553 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| LGV73_RS14290 () | 2749566..2749853 | + | 288 | Protein_2785 | transposase | - |
| LGV73_RS14295 () | 2749918..2751074 | + | 1157 | Protein_2786 | IS3 family transposase IS600 | Transposase |
| LGV73_RS14300 () | 2751118..2751534 | + | 417 | Protein_2787 | IS66 family transposase ISSfl3 | Transposase |
| LGV73_RS14305 () | 2751564..2751917 | + | 354 | Protein_2788 | hypothetical protein ; Integrase | Integrase |
| LGV73_RS14310 () | 2751969..2752355 | - | 387 | Protein_2789 | IS3 family transposase ISLad1 | Transposase |
| LGV73_RS14315 () | 2752389..2753990 | - | 1602 | WP_011110603.1 | IS66 family transposase ISSfl3 | Transposase |
| LGV73_RS14320 () | 2753987..2754166 | - | 180 | Protein_2791 | IS66 family insertion sequence element accessory protein TnpB | - |
| LGV73_RS14325 () | 2754222..2755431 | + | 1210 | Protein_2792 | IS3 family transposase IS629 | Transposase |
| LGV73_RS14330 () | 2755476..2755646 | - | 171 | Protein_2793 | IS66 family transposase ISSfl3 | Transposase |
| LGV73_RS14335 () | 2755643..2756317 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| LGV73_RS14340 () | 2756399..2757235 | - | 837 | Protein_2795 | hypothetical protein ; Integrase | Integrase |
| LGV73_RS14345 () | 2757417..2758841 | + | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| LGV73_RS14350 () | 2758884..2759111 | - | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| LGV73_RS14355 () | 2759125..2760183 | - | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| LGV73_RS14360 () | 2760362..2761720 | - | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| LGV73_RS14365 () | 2761710..2761772 | - | 63 | WP_097433929.1 | membrane protein YoeI | - |
| LGV73_RS14370 () | 2761933..2762916 | - | 984 | WP_000803326.1 | LysR substrate-binding domain-containing protein | - |
| LGV73_RS14375 () | 2762962..2763786 | - | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| LGV73_RS14380 () | 2763869..2764123 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| LGV73_RS14390 () | 2764876..2765148 | - | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| LGV73_RS14395 () | 2765618..2766517 | + | 900 | WP_000131772.1 | ATP phosphoribosyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|