MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 103904 bp
Accession: NZ_CP084653 Location: 1..103904 Organism: Yersinia ruckeri strain 16Y0180 Replicon: plasmid p16Y0180.1
Accession: NZ_CP084653 Location: 1..103904 Organism: Yersinia ruckeri strain 16Y0180 Replicon: plasmid p16Y0180.1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGL93_RS16810 (LGL93_16855) | 1..3354 | + | 3354 | WP_004720815.1 | DUF5710 domain-containing protein | - |
| LGL93_RS16815 (LGL93_16860) | 3359..3817 | + | 459 | WP_049688154.1 | hypothetical protein | - |
| LGL93_RS16820 (LGL93_16865) | 3834..4556 | + | 723 | WP_004720818.1 | DotI/IcmL/TraM family protein | - |
| LGL93_RS16825 (LGL93_16870) | 4802..5569 | + | 768 | WP_004720821.1 | hypothetical protein | VF |
| LGL93_RS16830 (LGL93_16875) | 5572..6825 | + | 1254 | WP_004720823.1 | conjugal transfer protein TraO | - |
| LGL93_RS16835 (LGL93_16880) | 6885..7592 | + | 708 | WP_155115565.1 | hypothetical protein | - |
| LGL93_RS16840 (LGL93_16885) | 7592..8119 | + | 528 | WP_038251868.1 | conjugal transfer protein TraQ | - |
| LGL93_RS16845 (LGL93_16890) | 8144..8527 | + | 384 | WP_004720828.1 | hypothetical protein | - |
| LGL93_RS16850 (LGL93_16895) | 8588..9544 | + | 957 | WP_004720829.1 | hypothetical protein | - |
| LGL93_RS16855 (LGL93_16900) | 9567..12644 | + | 3078 | WP_038251865.1 | conjugal transfer protein | - |
| LGL93_RS16860 (LGL93_16905) | 12658..13851 | + | 1194 | WP_004720831.1 | conjugal transfer protein TraW | - |
| LGL93_RS16865 (LGL93_16910) | 13851..14456 | + | 606 | WP_038251864.1 | conjugal transfer protein TraX | - |
| LGL93_RS16870 (LGL93_16915) | 14523..16664 | + | 2142 | WP_004720832.1 | DotA/TraY family protein | - |
| LGL93_RS16875 (LGL93_16920) | 16770..16988 | + | 219 | WP_038251862.1 | plasmid stabilization protein | - |
| LGL93_RS16880 (LGL93_16925) | 17010..17690 | + | 681 | WP_038251860.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LGL93_RS16885 (LGL93_16930) | 17786..19069 | + | 1284 | WP_004720838.1 | hypothetical protein | - |
| LGL93_RS16890 (LGL93_16935) | 19074..20138 | + | 1065 | WP_004720840.1 | DsbC family protein | - |
| LGL93_RS16895 (LGL93_16940) | 20149..22449 | + | 2301 | WP_004720841.1 | hypothetical protein | VF |
| LGL93_RS16900 (LGL93_16945) | 22536..23072 | + | 537 | WP_038251858.1 | Phospholipase D | VF |
| LGL93_RS16905 (LGL93_16950) | 23173..25875 | - | 2703 | WP_004720844.1 | hypothetical protein | - |
| LGL93_RS16910 (LGL93_16955) | 26255..27304 | - | 1050 | WP_038251856.1 | Abi family protein | - |
| LGL93_RS16915 (LGL93_16960) | 27601..29526 | - | 1926 | WP_004720847.1 | Protein TraI | Relaxase |
| LGL93_RS16920 (LGL93_16965) | 29528..29872 | - | 345 | WP_004720848.1 | plasmid mobilization protein MobA | - |
| LGL93_RS16925 (LGL93_16970) | 30141..30464 | + | 324 | WP_004720850.1 | hypothetical protein | - |
| LGL93_RS16930 (LGL93_16980) | 31003..31821 | - | 819 | WP_004720855.1 | DUF932 domain-containing protein | - |
| LGL93_RS16935 (LGL93_16985) | 32255..32551 | - | 297 | WP_004720859.1 | NadS family protein | Antitoxin Detail |
| LGL93_RS16940 (LGL93_16990) | 32597..32920 | - | 324 | WP_038251855.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LGL93_RS16945 (LGL93_16995) | 33072..33305 | + | 234 | WP_038251853.1 | hypothetical protein | - |
| LGL93_RS16950 (LGL93_17000) | 33313..33687 | - | 375 | WP_004720865.1 | hypothetical protein | - |
| LGL93_RS16955 (LGL93_17005) | 33776..34471 | - | 696 | WP_038251906.1 | IS6 family transposase ISYps1 | Transposase |
| LGL93_RS16960 (LGL93_17010) | 35012..36211 | + | 1200 | WP_038251850.1 | AAA family ATPase | - |
| LGL93_RS16965 (LGL93_17015) | 36220..37188 | + | 969 | WP_004723386.1 | ParB family protein | - |
| LGL93_RS16970 (LGL93_17020) | 37640..37963 | - | 324 | Protein_32 | integrase core domain-containing protein | - |
| LGL93_RS16975 (LGL93_17025) | 38028..38723 | - | 696 | WP_038251906.1 | IS6 family transposase ISYps1 | Transposase |
| LGL93_RS16980 (LGL93_17030) | 39006..40346 | - | 1341 | WP_004723383.1 | hypothetical protein | - |
| LGL93_RS16985 (LGL93_17035) | 40347..40943 | - | 597 | WP_038251904.1 | hypothetical protein | - |
| LGL93_RS16995 (LGL93_17045) | 42782..43867 | + | 1086 | WP_038251900.1 | hypothetical protein | - |
| LGL93_RS17000 (LGL93_17050) | 44022..45383 | - | 1362 | WP_004722020.1 | hypothetical protein | - |
| LGL93_RS17005 (LGL93_17055) | 45938..46300 | + | 363 | WP_004722021.1 | hypothetical protein | - |
| LGL93_RS17010 (LGL93_17060) | 46372..47055 | + | 684 | WP_049688204.1 | hypothetical protein | - |
| LGL93_RS17015 (LGL93_17065) | 47057..47836 | + | 780 | WP_004722026.1 | tyrosine-type recombinase/integrase | - |
| LGL93_RS17020 (LGL93_17070) | 48068..49747 | + | 1680 | WP_004722028.1 | IS3 family transposase ISXca2 | Transposase |
| LGL93_RS17025 (LGL93_17075) | 49750..50658 | + | 909 | WP_004722030.1 | TniB family NTP-binding protein | - |
| LGL93_RS17030 (LGL93_17080) | 50655..51875 | + | 1221 | WP_049688202.1 | TniQ family protein | - |
| LGL93_RS17035 (LGL93_17085) | 51872..52192 | - | 321 | WP_038251894.1 | hypothetical protein | - |
| LGL93_RS17040 (LGL93_17090) | 52220..52960 | - | 741 | WP_038251931.1 | tyrosine-type recombinase/integrase | - |
| LGL93_RS17045 (LGL93_17095) | 53387..56017 | + | 2631 | WP_234055444.1 | P-loop NTPase fold protein | - |
| LGL93_RS17050 (LGL93_17100) | 56062..56643 | + | 582 | WP_234055445.1 | hypothetical protein | - |
| LGL93_RS17055 (LGL93_17105) | 56741..58243 | + | 1503 | WP_004722040.1 | DUF4041 domain-containing protein | - |
| LGL93_RS17060 (LGL93_17110) | 58532..59179 | + | 648 | WP_038251892.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LGL93_RS17065 (LGL93_17115) | 59491..59787 | - | 297 | WP_038251890.1 | hypothetical protein | - |
| LGL93_RS17070 (LGL93_17120) | 60186..60956 | + | 771 | WP_004722046.1 | HEPN domain-containing protein | - |
| LGL93_RS17075 (LGL93_17125) | 60994..61404 | + | 411 | Protein_53 | IS6 family transposase IS1635 | Transposase |
| LGL93_RS17080 (LGL93_17130) | 61438..61737 | - | 300 | WP_050777622.1 | hypothetical protein | - |
| LGL93_RS17085 (LGL93_17135) | 61878..64690 | - | 2813 | Protein_55 | Tn3 family transposase ISPsy42 | Transposase |
| LGL93_RS17090 (LGL93_17140) | 64857..65477 | + | 621 | WP_004722053.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| LGL93_RS17095 (LGL93_17145) | 65474..68125 | + | 2652 | WP_115175337.1 | AAA family ATPase | - |
| LGL93_RS17100 (LGL93_17150) | 68332..68685 | + | 354 | Protein_58 | ISKra4 family transposase ISKpn19 | Transposase |
| LGL93_RS17105 (LGL93_17155) | 68795..69943 | - | 1149 | WP_038251888.1 | putative DNA binding domain-containing protein | - |
| LGL93_RS17110 (LGL93_17160) | 69922..72549 | - | 2628 | WP_004722060.1 | hypothetical protein | - |
| LGL93_RS17115 (LGL93_17165) | 72577..72961 | - | 385 | Protein_61 | type I restriction endonuclease subunit M | - |
| LGL93_RS17120 (LGL93_17170) | 73014..73253 | - | 240 | WP_004722063.1 | hypothetical protein | - |
| LGL93_RS17125 (LGL93_17175) | 73675..74880 | + | 1206 | WP_004722065.1 | IS91 family transposase ISVa3 | Transposase |
| LGL93_RS17130 (LGL93_17180) | 75257..76156 | - | 900 | WP_139127572.1 | hypothetical protein | - |
| LGL93_RS17135 (LGL93_17185) | 77067..77717 | - | 651 | WP_040155137.1 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| LGL93_RS17140 (LGL93_17190) | 77838..80816 | + | 2979 | WP_004723380.1 | Tn3 family transposase TnBth2 | Transposase |
| LGL93_RS17145 (LGL93_17195) | 80883..80978 | - | 96 | Protein_67 | IS6 family transposase | - |
| LGL93_RS17150 (LGL93_17200) | 81043..81135 | + | 93 | Protein_68 | helix-turn-helix domain-containing protein | - |
| LGL93_RS17155 (LGL93_17205) | 81198..81551 | + | 354 | WP_038251884.1 | hypothetical protein | - |
| LGL93_RS17160 (LGL93_17210) | 81781..82533 | + | 753 | WP_069971731.1 | HEAT repeat domain-containing protein | - |
| LGL93_RS17165 (LGL93_17215) | 83637..84734 | - | 1098 | WP_230596536.1 | Replication protein | - |
| LGL93_RS17170 (LGL93_17220) | 85483..86193 | + | 711 | WP_004720782.1 | PAS domain-containing protein | - |
| LGL93_RS17175 (LGL93_17225) | 86250..86411 | - | 162 | WP_004720783.1 | hypothetical protein | - |
| LGL93_RS17180 (LGL93_17230) | 86708..87079 | - | 372 | WP_004720785.1 | helix-turn-helix transcriptional regulator | - |
| LGL93_RS17185 (LGL93_17235) | 87370..87879 | + | 510 | WP_004720786.1 | transcription termination/antitermination NusG family protein | - |
| LGL93_RS17190 (LGL93_17240) | 88106..88807 | + | 702 | WP_004720789.1 | DUF2913 family protein | - |
| LGL93_RS17195 (LGL93_17245) | 88870..89070 | + | 201 | WP_004720790.1 | hypothetical protein | - |
| LGL93_RS17200 (LGL93_17250) | 89148..90191 | + | 1044 | WP_072012918.1 | hypothetical protein | VF |
| LGL93_RS17205 (LGL93_17255) | 90191..90616 | + | 426 | WP_049688159.1 | type IV pilus biogenesis protein PilM | - |
| LGL93_RS17210 (LGL93_17260) | 90637..92259 | + | 1623 | WP_004720794.1 | Outer membrane lipoprotein BfpB | VF |
| LGL93_RS17215 (LGL93_17265) | 92334..92987 | + | 654 | WP_143715016.1 | hypothetical protein | - |
| LGL93_RS17220 (LGL93_17270) | 92991..94304 | + | 1314 | WP_038251882.1 | type 4b pilus protein PilO2 | - |
| LGL93_RS17225 (LGL93_17275) | 94291..94878 | + | 588 | WP_049688157.1 | hypothetical protein | VF |
| LGL93_RS17230 (LGL93_17280) | 94882..96375 | + | 1494 | WP_069971730.1 | Type II secretion system protein E | VF |
| LGL93_RS17235 (LGL93_17285) | 96372..97514 | + | 1143 | WP_230596535.1 | hypothetical protein | VF |
| LGL93_RS17240 (LGL93_17290) | 97552..98145 | + | 594 | WP_038251880.1 | hypothetical protein | VF |
| LGL93_RS17245 (LGL93_17295) | 98207..98692 | + | 486 | WP_004720806.1 | hypothetical protein | VF |
| LGL93_RS17250 (LGL93_17300) | 98692..99342 | + | 651 | WP_038251878.1 | hypothetical protein | VF |
| LGL93_RS17255 (LGL93_17305) | 99339..100712 | + | 1374 | WP_099511713.1 | hypothetical protein | VF |
| LGL93_RS17260 (LGL93_17310) | 101238..101693 | + | 456 | WP_004720812.1 | hypothetical protein | VF |
| LGL93_RS17265 (LGL93_17315) | 101690..102478 | + | 789 | WP_038251876.1 | hypothetical protein | VF |
| LGL93_RS17270 (LGL93_17320) | 102478..103632 | + | 1155 | WP_004720814.1 | Twitching mobility protein | VF |
| LGL93_RS17275 (LGL93_17325) | 103629..103889 | + | 261 | WP_038251874.1 | IcmT/TraK family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|