MGE detailed information
MGE type: Conjugative plasmid MGE length: 83706 bp
Accession: NZ_CP084638 Location: 1..83706 Organism: Yersinia ruckeri strain 17Y0412 Replicon: plasmid p17Y0412.1
Accession: NZ_CP084638 Location: 1..83706 Organism: Yersinia ruckeri strain 17Y0412 Replicon: plasmid p17Y0412.1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGL85_RS17650 (LGL85_17700) | 225..1232 | + | 1008 | WP_234049642.1 | hypothetical protein | VF |
| LGL85_RS17655 (LGL85_17705) | 1229..1654 | + | 426 | WP_234049643.1 | type IV pilus biogenesis protein PilM | - |
| LGL85_RS17660 (LGL85_17710) | 1665..3305 | + | 1641 | WP_120806787.1 | Outer membrane lipoprotein BfpB | VF |
| LGL85_RS17665 (LGL85_17715) | 3310..4575 | + | 1266 | WP_120806788.1 | type 4b pilus protein PilO2 | - |
| LGL85_RS17670 (LGL85_17720) | 4562..5098 | + | 537 | WP_234049644.1 | type IV pilus biogenesis protein PilP | - |
| LGL85_RS17675 (LGL85_17725) | 5100..6602 | + | 1503 | WP_234049645.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| LGL85_RS17680 (LGL85_17730) | 6663..7790 | + | 1128 | WP_234049646.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| LGL85_RS17685 (LGL85_17735) | 7812..8420 | + | 609 | WP_120806739.1 | hypothetical protein | VF |
| LGL85_RS17690 (LGL85_17740) | 8430..8900 | + | 471 | WP_234049647.1 | hypothetical protein | VF |
| LGL85_RS17695 (LGL85_17745) | 8897..9565 | + | 669 | WP_120806741.1 | prepilin peptidase | - |
| LGL85_RS17700 (LGL85_17750) | 9555..10934 | + | 1380 | WP_234049648.1 | hypothetical protein | VF |
| LGL85_RS17705 (LGL85_17755) | 10979..11434 | + | 456 | WP_120806742.1 | DotD/TraH family lipoprotein | - |
| LGL85_RS17710 (LGL85_17760) | 11431..12219 | + | 789 | WP_050074349.1 | hypothetical protein | VF |
| LGL85_RS17715 (LGL85_17765) | 12239..13414 | + | 1176 | WP_145559185.1 | putative protein YggR | VF |
| LGL85_RS17720 (LGL85_17770) | 13414..13680 | + | 267 | WP_050074346.1 | IcmT/TraK family protein | - |
| LGL85_RS17725 (LGL85_17775) | 13739..16945 | + | 3207 | WP_234049649.1 | DUF5710 domain-containing protein | - |
| LGL85_RS17730 (LGL85_17780) | 16955..17440 | + | 486 | WP_234049650.1 | hypothetical protein | - |
| LGL85_RS17735 (LGL85_17785) | 17525..18199 | + | 675 | WP_050074341.1 | hypothetical protein | VF |
| LGL85_RS17740 (LGL85_17790) | 18202..19212 | + | 1011 | WP_050289002.1 | hypothetical protein | VF |
| LGL85_RS17745 (LGL85_17795) | 19217..20428 | + | 1212 | WP_234049651.1 | conjugal transfer protein TraO | - |
| LGL85_RS17750 (LGL85_17800) | 20428..21165 | + | 738 | WP_234049652.1 | hypothetical protein | - |
| LGL85_RS17755 (LGL85_17805) | 21174..21704 | + | 531 | WP_050074337.1 | conjugal transfer protein TraQ | - |
| LGL85_RS17760 (LGL85_17810) | 21719..22123 | + | 405 | WP_108088340.1 | hypothetical protein | - |
| LGL85_RS17765 (LGL85_17815) | 22214..22819 | + | 606 | WP_050074479.1 | hypothetical protein | - |
| LGL85_RS17770 (LGL85_17820) | 22822..25896 | + | 3075 | WP_234049653.1 | type IV secretory system conjugative DNA transfer family protein | - |
| LGL85_RS17775 (LGL85_17825) | 26087..27316 | + | 1230 | WP_120806751.1 | conjugal transfer protein TraW | - |
| LGL85_RS17780 (LGL85_17830) | 27309..27914 | + | 606 | WP_050289008.1 | conjugal transfer protein TraX | - |
| LGL85_RS17785 (LGL85_17835) | 28043..30163 | + | 2121 | WP_234049654.1 | DotA/TraY family protein | - |
| LGL85_RS17790 (LGL85_17840) | 30175..30747 | + | 573 | WP_088130798.1 | hypothetical protein | - |
| LGL85_RS17795 (LGL85_17845) | 30895..32211 | + | 1317 | WP_234049655.1 | conjugal transfer protein TrbA | - |
| LGL85_RS17800 (LGL85_17850) | 32234..33235 | + | 1002 | WP_234049656.1 | hypothetical protein | - |
| LGL85_RS17805 (LGL85_17855) | 33297..35474 | + | 2178 | WP_234049657.1 | F-type conjugative transfer protein TrbC | - |
| LGL85_RS17810 (LGL85_17860) | 35557..35862 | + | 306 | WP_234049658.1 | hypothetical protein | - |
| LGL85_RS17815 (LGL85_17865) | 35880..36416 | + | 537 | WP_234049659.1 | Phospholipase D | VF |
| LGL85_RS17820 (LGL85_17870) | 36426..36743 | + | 318 | WP_050289016.1 | hypothetical protein | - |
| LGL85_RS17825 (LGL85_17875) | 36804..38759 | - | 1956 | WP_234049660.1 | Protein TraI | Relaxase |
| LGL85_RS17830 (LGL85_17880) | 38756..39106 | - | 351 | WP_050074462.1 | plasmid mobilization protein MobA | - |
| LGL85_RS17835 (LGL85_17885) | 39375..39713 | + | 339 | WP_050074460.1 | hypothetical protein | - |
| LGL85_RS17840 (LGL85_17890) | 39844..40155 | - | 312 | WP_050074459.1 | DUF5983 family protein | - |
| LGL85_RS17845 (LGL85_17895) | 40200..41021 | - | 822 | WP_050289019.1 | DUF932 domain-containing protein | - |
| LGL85_RS17850 (LGL85_17900) | 41505..42344 | - | 840 | WP_050074487.1 | DUF4942 domain-containing protein | - |
| LGL85_RS17855 (LGL85_17905) | 42785..43159 | - | 375 | WP_050074458.1 | hypothetical protein | - |
| LGL85_RS17860 (LGL85_17910) | 43214..43456 | - | 243 | WP_050074457.1 | hypothetical protein | - |
| LGL85_RS17865 (LGL85_17915) | 43543..43881 | - | 339 | WP_050074456.1 | hypothetical protein | - |
| LGL85_RS17870 (LGL85_17920) | 43933..44178 | - | 246 | WP_050289020.1 | hypothetical protein | - |
| LGL85_RS17875 (LGL85_17925) | 45080..45841 | - | 762 | WP_234049623.1 | plasmid SOS inhibition protein A | - |
| LGL85_RS17880 (LGL85_17930) | 45838..46284 | - | 447 | WP_050074451.1 | conjugation system SOS inhibitor PsiB | - |
| LGL85_RS17885 (LGL85_17935) | 46323..48338 | - | 2016 | WP_234049624.1 | ParB/RepB/Spo0J family partition protein | - |
| LGL85_RS17890 (LGL85_17940) | 48433..48714 | - | 282 | WP_234049625.1 | Mab-21 family protein | - |
| LGL85_RS17895 (LGL85_17945) | 49412..49615 | - | 204 | WP_145560260.1 | hypothetical protein | - |
| LGL85_RS17900 (LGL85_17950) | 49659..50165 | - | 507 | WP_234049661.1 | antirestriction protein ArdA | - |
| LGL85_RS17905 (LGL85_17955) | 50177..50362 | + | 186 | WP_234049626.1 | hypothetical protein | - |
| LGL85_RS17910 (LGL85_17960) | 50623..50865 | - | 243 | WP_234049627.1 | hypothetical protein | - |
| LGL85_RS17915 (LGL85_17965) | 51128..52057 | - | 930 | WP_234049628.1 | DUF1281 domain-containing protein | - |
| LGL85_RS17920 (LGL85_17970) | 52460..52696 | - | 237 | WP_073999971.1 | hypothetical protein | - |
| LGL85_RS17925 (LGL85_17975) | 53004..53567 | - | 564 | WP_234049629.1 | helix-turn-helix transcriptional regulator | - |
| LGL85_RS17930 (LGL85_17980) | 53666..54070 | - | 405 | WP_234049630.1 | plasmid partitioning/stability family protein | - |
| LGL85_RS17935 (LGL85_17985) | 54077..55054 | - | 978 | WP_234049631.1 | plasmid segregation protein ParM | - |
| LGL85_RS17940 (LGL85_17990) | 55311..55811 | - | 501 | WP_120806770.1 | hypothetical protein | - |
| LGL85_RS17945 (LGL85_17995) | 56233..56562 | - | 330 | WP_049615233.1 | HigA family addiction module antitoxin | Antitoxin Detail |
| LGL85_RS17950 (LGL85_18000) | 56574..56864 | - | 291 | WP_049615238.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LGL85_RS17955 (LGL85_18005) | 57002..57823 | - | 822 | WP_080991164.1 | N-6 DNA methylase | - |
| LGL85_RS17960 (LGL85_18010) | 58197..58622 | + | 426 | WP_234049632.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LGL85_RS17965 (LGL85_18015) | 58622..59878 | + | 1257 | WP_234049633.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| LGL85_RS17970 (LGL85_18020) | 59939..60295 | - | 357 | WP_234049634.1 | hypothetical protein | - |
| LGL85_RS17975 (LGL85_18025) | 60353..60580 | - | 228 | WP_145544398.1 | hypothetical protein | - |
| LGL85_RS17980 (LGL85_18030) | 60630..61250 | - | 621 | WP_226723006.1 | ParA family protein | - |
| LGL85_RS17985 (LGL85_18035) | 61570..62262 | + | 693 | WP_234049662.1 | IS6 family transposase ISYps1 | Transposase |
| LGL85_RS17990 (LGL85_18040) | 62363..63934 | - | 1572 | WP_234049635.1 | ATP-binding protein | - |
| LGL85_RS17995 (LGL85_18045) | 64428..65075 | + | 648 | WP_038251892.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LGL85_RS18000 (LGL85_18050) | 65387..65692 | - | 306 | WP_234049636.1 | hypothetical protein | - |
| LGL85_RS18005 (LGL85_18055) | 66490..69426 | + | 2937 | WP_234049637.1 | Tn3 family transposase TnpA_ISYps3 | Transposase |
| LGL85_RS18010 (LGL85_18060) | 69631..70653 | + | 1023 | WP_234049638.1 | tetratricopeptide repeat protein | - |
| LGL85_RS18015 (LGL85_18065) | 70650..71207 | + | 558 | WP_234049663.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| LGL85_RS18020 (LGL85_18070) | 71249..71521 | + | 273 | WP_234049639.1 | arylsulfatase regulator | - |
| LGL85_RS18025 (LGL85_18075) | 72190..72888 | - | 699 | WP_110592897.1 | arsenical resistance protein ArsH | - |
| LGL85_RS18030 (LGL85_18080) | 72975..73295 | + | 321 | WP_110592896.1 | transcriptional regulator | - |
| LGL85_RS18035 (LGL85_18085) | 73342..74631 | + | 1290 | WP_110592895.1 | arsenite efflux transporter membrane subunit ArsB | - |
| LGL85_RS18040 (LGL85_18090) | 74644..75069 | + | 426 | WP_110592894.1 | glutaredoxin-dependent arsenate reductase | - |
| LGL85_RS18045 (LGL85_18095) | 75087..75668 | - | 582 | WP_110592893.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| LGL85_RS18050 (LGL85_18100) | 75828..78812 | + | 2985 | WP_234049640.1 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| LGL85_RS18055 (LGL85_18105) | 78848..79747 | - | 900 | WP_234049641.1 | hypothetical protein | - |
| LGL85_RS18060 (LGL85_18110) | 80759..81709 | - | 951 | WP_234049664.1 | Replication protein | - |
| LGL85_RS18065 (LGL85_18115) | 82881..83363 | + | 483 | WP_120806783.1 | transcription termination/antitermination NusG family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|