MGE detailed information
MGE type: Genomic_island MGE length: 65118 bp
Accession: NZ_CP084529 Location: 4269686..4334803 Organism: Escherichia coli strain Origami2-DE3 Replicon: chromosome
Accession: NZ_CP084529 Location: 4269686..4334803 Organism: Escherichia coli strain Origami2-DE3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LFW28_RS20460 (4264710) | 4264710..4265879 | - | 1170 | WP_001285927.1 | 2-methylcitrate synthase | - |
| LFW28_RS20465 (4266412) | 4266412..4267302 | - | 891 | WP_000052206.1 | methylisocitrate lyase | - |
| LFW28_RS20470 (4267541) | 4267541..4269127 | + | 1587 | WP_000941041.1 | propionate catabolism operon regulatory protein PrpR | - |
| LFW28_RS20475 (4269225) | 4269225..4269500 | - | 276 | WP_000691956.1 | DUF1471 family periplasmic protein YahO | - |
| LFW28_RS20480 (4269647) | 4269647..4270318 | + | 672 | WP_000983410.1 | LysE family transporter | - |
| LFW28_RS20485 (4270335) | 4270335..4270580 | - | 246 | WP_000290616.1 | protein YahM | - |
| LFW28_RS20490 (4270993) | 4270993..4271808 | - | 816 | WP_001301260.1 | protein YahL | - |
| LFW28_RS20495 (4272051) | 4272051..4273100 | - | 1050 | WP_000692754.1 | NADPH-dependent aldehyde reductase YahK | - |
| LFW28_RS20500 (4273187) | 4273187..4273261 | - | 75 | Protein_4027 | hypothetical protein | - |
| LFW28_RS20505 (4273477) | 4273477..4274859 | - | 1383 | WP_000665120.1 | amidohydrolase family protein | - |
| LFW28_RS20510 (4274869) | 4274869..4275819 | - | 951 | WP_000661672.1 | carbamate kinase family protein | - |
| LFW28_RS20515 (4276165) | 4276165..4276422 | - | 258 | Protein_4030 | hypothetical protein | VF |
| LFW28_RS20520 (4276518) | 4276518..4277411 | + | 894 | WP_000770246.1 | LysR substrate-binding domain-containing protein | - |
| LFW28_RS20525 (4277740) | 4277740..4278603 | + | 864 | WP_001065553.1 | GTPase family protein | - |
| LFW28_RS20530 (4278695) | 4278695..4279516 | + | 822 | WP_000197389.1 | DUF932 domain-containing protein | - |
| LFW28_RS20535 (4279733) | 4279733..4279924 | + | 192 | Protein_4034 | DeoR family transcriptional regulator | - |
| LFW28_RS20540 (4279971) | 4279971..4280147 | + | 177 | WP_001285112.1 | hypothetical protein | - |
| LFW28_RS20545 (4280147) | 4280147..4280590 | + | 444 | WP_000824223.1 | lipoprotein YafY | - |
| LFW28_RS20550 (4280613) | 4280613..4281080 | + | 468 | WP_001547765.1 | protein YkfB | - |
| LFW28_RS20555 (4281157) | 4281157..4281396 | + | 240 | WP_000194654.1 | DUF905 family protein | - |
| LFW28_RS20560 (4281494) | 4281494..4281952 | + | 459 | WP_000211838.1 | antirestriction protein | - |
| LFW28_RS20565 (4281968) | 4281968..4282444 | + | 477 | WP_000811693.1 | RadC family protein | - |
| LFW28_RS20570 (4282453) | 4282453..4282674 | + | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
| LFW28_RS20575 (4282693) | 4282693..4283010 | + | 318 | WP_000070395.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin Detail |
| LFW28_RS20580 (4283031) | 4283031..4283372 | + | 342 | WP_000854672.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| LFW28_RS20590 (4283944) | 4283944..4285197 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| LFW28_RS20595 (4285209) | 4285209..4286312 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| LFW28_RS20600 (4286600) | 4286600..4287655 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| LFW28_RS20605 (4287694) | 4287694..4288095 | - | 402 | WP_000174689.1 | sigma factor-binding protein Crl | - |
| - (4288813) | 4288813..4288893 | - | 81 | NuclAT_14 | - | - |
| - (4288813) | 4288813..4288893 | - | 81 | NuclAT_14 | - | - |
| - (4288813) | 4288813..4288893 | - | 81 | NuclAT_14 | - | - |
| - (4288813) | 4288813..4288893 | - | 81 | NuclAT_14 | - | - |
| LFW28_RS20610 (4288153) | 4288153..4289397 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| LFW28_RS20615 (4289489) | 4289489..4289947 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| LFW28_RS20620 (4290208) | 4290208..4291665 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| LFW28_RS20625 (4291722) | 4291722..4292243 | - | 522 | Protein_4051 | peptide chain release factor H | - |
| LFW28_RS20630 (4292239) | 4292239..4292445 | - | 207 | Protein_4052 | RtcB family protein | - |
| LFW28_RS20635 (4292763) | 4292763..4293215 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| LFW28_RS20640 (4293225) | 4293225..4293623 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| LFW28_RS20645 (4293626) | 4293626..4293919 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| LFW28_RS20650 (4293971) | 4293971..4295026 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| LFW28_RS20655 (4295097) | 4295097..4295882 | - | 786 | WP_000207552.1 | Chemotaxis protein LafU | VF |
| LFW28_RS20660 (4295854) | 4295854..4297566 | + | 1713 | Protein_4058 | Flagellar biosynthesis protein FlhA | VF |
| LFW28_RS20665 (4297790) | 4297790..4298287 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| LFW28_RS20670 (4298462) | 4298462..4299211 | - | 750 | WP_000056849.1 | Murein DD-endopeptidase MepH | VF |
| LFW28_RS20675 (4299421) | 4299421..4299681 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| LFW28_RS20680 (4299684) | 4299684..4299962 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| LFW28_RS20685 (4300118) | 4300118..4300858 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| LFW28_RS20690 (4300829) | 4300829..4301596 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| LFW28_RS20695 (4302039) | 4302039..4302770 | + | 732 | WP_000388269.1 | protein YagJ | - |
| LFW28_RS20700 (4302861) | 4302861..4303487 | - | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| LFW28_RS20705 (4303759) | 4303759..4304457 | - | 699 | WP_001214248.1 | recombinase family protein | - |
| LFW28_RS20710 (4304484) | 4304484..4305338 | - | 855 | WP_000072039.1 | protein YagM | - |
| LFW28_RS20715 (4305457) | 4305457..4305681 | - | 225 | WP_001272156.1 | helix-turn-helix domain-containing protein | - |
| LFW28_RS20720 (4305678) | 4305678..4306118 | - | 441 | WP_000224818.1 | protein YagN | - |
| LFW28_RS20725 (4306235) | 4306235..4307635 | - | 1401 | WP_001407714.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LFW28_RS20730 (4307920) | 4307920..4308258 | - | 339 | Protein_4072 | LysR substrate-binding domain-containing protein | - |
| LFW28_RS20735 (4308309) | 4308309..4309265 | - | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| LFW28_RS20740 (4309275) | 4309275..4311473 | - | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| LFW28_RS20745 (4311470) | 4311470..4312426 | - | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| LFW28_RS20750 (4312423) | 4312423..4313112 | - | 690 | WP_000070700.1 | aldehyde dehydrogenase iron-sulfur subunit PaoA | - |
| LFW28_RS20755 (4313530) | 4313530..4314144 | + | 615 | WP_001019920.1 | YagU family protein | - |
| LFW28_RS20760 (4314392) | 4314392..4314721 | - | 330 | WP_001303809.1 | YkgJ family cysteine cluster protein | - |
| LFW28_RS20765 (4315034) | 4315034..4315744 | - | 711 | WP_001350485.1 | putative fimbrial chaperone EcpE | VF |
| LFW28_RS20770 (4315713) | 4315713..4317356 | - | 1644 | WP_001310578.1 | Fimbria adhesin EcpD | VF |
| LFW28_RS20775 (4317346) | 4317346..4319871 | - | 2526 | WP_001131096.1 | putative outer membrane usher protein EcpC | VF |
| LFW28_RS20780 (4319897) | 4319897..4320565 | - | 669 | WP_000716398.1 | putative fimbrial chaperone EcpB | VF |
| LFW28_RS20785 (4320623) | 4320623..4321210 | - | 588 | WP_000730972.1 | Common pilus major fimbrillin subunit EcpA | VF |
| LFW28_RS20790 (4321285) | 4321285..4321827 | - | 543 | WP_001301257.1 | HTH-type transcriptional regulator EcpR | VF |
| LFW28_RS20795 (4322651) | 4322651..4322878 | + | 228 | WP_001147279.1 | protein YkgL | - |
| LFW28_RS20800 (4322913) | 4322913..4323053 | - | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| LFW28_RS20805 (4323053) | 4323053..4323316 | - | 264 | WP_000803998.1 | type B 50S ribosomal protein L31 | - |
| LFW28_RS20810 (4323680) | 4323680..4323781 | - | 102 | WP_000662258.1 | small membrane protein YkgR | - |
| LFW28_RS20815 (4324255) | 4324255..4324344 | - | 90 | Protein_4089 | hypothetical protein | - |
| LFW28_RS20820 (4324896) | 4324896..4325771 | + | 876 | Protein_4090 | hypothetical protein | VF |
| LFW28_RS20825 (4325922) | 4325922..4326575 | - | 654 | Protein_4091 | HTH-type transcriptional activator RhaR | VF |
| LFW28_RS20830 (4326878) | 4326878..4327006 | + | 129 | Protein_4092 | aldo/keto reductase | - |
| LFW28_RS20835 (4327165) | 4327165..4327758 | - | 594 | WP_001299021.1 | reactive chlorine species resistance protein RclC | - |
| LFW28_RS20840 (4327770) | 4327770..4328006 | - | 237 | WP_000474084.1 | reactive chlorine resistance periplasmic protein RclB | - |
| LFW28_RS20845 (4328115) | 4328115..4329440 | - | 1326 | WP_001046307.1 | reactive chlorine resistance oxidoreductase RclA | - |
| LFW28_RS20850 (4329666) | 4329666..4330520 | + | 855 | WP_000339594.1 | reactive chlorine-specific transcriptional regulator RclR | - |
| LFW28_RS20855 (4331047) | 4331047..4331766 | + | 720 | WP_001102108.1 | heterodisulfide reductase-related iron-sulfur binding cluster | - |
| LFW28_RS20860 (4331777) | 4331777..4333204 | + | 1428 | WP_000023927.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| LFW28_RS20865 (4333197) | 4333197..4333892 | + | 696 | WP_000370307.1 | LUD domain-containing protein | - |
| LFW28_RS20870 (4334135) | 4334135..4334803 | - | 669 | WP_001209100.1 | protein YkgH | - |
| LFW28_RS20875 (4335016) | 4335016..4336686 | - | 1671 | WP_001159094.1 | choline dehydrogenase | - |
| LFW28_RS20880 (4336700) | 4336700..4338172 | - | 1473 | WP_000089110.1 | betaine-aldehyde dehydrogenase | - |
| LFW28_RS20885 (4338186) | 4338186..4338773 | - | 588 | WP_001335745.1 | transcriptional regulator BetI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|