MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 109365 bp
Accession: NZ_CP084484 Location: 3594362..3703726 Organism: Pseudomonas sp. PS1(2021) Replicon: chromosome
Accession: NZ_CP084484 Location: 3594362..3703726 Organism: Pseudomonas sp. PS1(2021) Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LE197_RS17160 (LE197_17160) | 3589855..3590463 | - | 609 | Protein_3418 | type 1 fimbrial protein | - |
| LE197_RS17165 (LE197_17165) | 3590906..3591283 | - | 378 | WP_003117019.1 | Hpt domain-containing protein | - |
| LE197_RS17170 (LE197_17170) | 3591867..3592505 | + | 639 | WP_003120654.1 | NUDIX hydrolase | - |
| LE197_RS17175 (LE197_17175) | 3592890..3593450 | + | 561 | WP_226034085.1 | hypothetical protein | - |
| LE197_RS17180 (LE197_17180) | 3593571..3593975 | - | 405 | WP_003112559.1 | thioesterase family protein | - |
| LE197_RS17190 (LE197_17190) | 3594499..3595365 | + | 867 | WP_003120956.1 | ParA family protein | - |
| LE197_RS17195 (LE197_17195) | 3595367..3596104 | + | 738 | WP_016852973.1 | hypothetical protein | - |
| LE197_RS17200 (LE197_17200) | 3596101..3596592 | + | 492 | WP_016852972.1 | hypothetical protein | - |
| LE197_RS17205 (LE197_17205) | 3596589..3597251 | + | 663 | WP_023082646.1 | hypothetical protein | - |
| LE197_RS17210 (LE197_17210) | 3597248..3597931 | + | 684 | WP_016852970.1 | hypothetical protein | - |
| LE197_RS17215 (LE197_17215) | 3597931..3598632 | + | 702 | WP_003117025.1 | DUF2786 domain-containing protein | - |
| LE197_RS36895 | 3598629..3598754 | + | 126 | WP_003117026.1 | hypothetical protein | - |
| LE197_RS17220 (LE197_17220) | 3598751..3600093 | + | 1343 | Protein_3430 | replicative DNA helicase | - |
| LE197_RS17225 (LE197_17225) | 3600532..3600978 | - | 447 | WP_003117028.1 | hypothetical protein | - |
| LE197_RS17230 (LE197_17230) | 3601331..3601858 | + | 528 | WP_003117030.1 | hypothetical protein | - |
| LE197_RS17235 (LE197_17235) | 3601855..3602112 | + | 258 | WP_003117031.1 | hypothetical protein | - |
| LE197_RS17240 (LE197_17240) | 3602105..3602599 | + | 495 | WP_004347979.1 | hypothetical protein | - |
| LE197_RS17245 (LE197_17245) | 3602592..3602825 | + | 234 | WP_003103841.1 | hypothetical protein | - |
| LE197_RS17250 (LE197_17250) | 3602825..3603847 | + | 1023 | WP_003117033.1 | nucleoid-associated protein YejK | - |
| LE197_RS17255 (LE197_17255) | 3603844..3604734 | + | 891 | WP_016851600.1 | DNA adenine methylase | - |
| LE197_RS17260 (LE197_17260) | 3604755..3605024 | + | 270 | WP_003117035.1 | Arc family DNA-binding protein | - |
| LE197_RS17265 (LE197_17265) | 3605021..3606757 | + | 1737 | WP_023464346.1 | ParB family protein | - |
| LE197_RS17270 (LE197_17270) | 3606785..3607552 | + | 768 | WP_016851602.1 | DUF2857 domain-containing protein | - |
| LE197_RS17275 (LE197_17275) | 3607549..3608853 | + | 1305 | WP_023101569.1 | STY4528 family pathogenicity island replication protein | - |
| LE197_RS17280 (LE197_17280) | 3609905..3610102 | + | 198 | WP_019396765.1 | hypothetical protein | - |
| LE197_RS17285 (LE197_17285) | 3610259..3610987 | + | 729 | WP_016851605.1 | TIGR03761 family integrating conjugative element protein | - |
| LE197_RS17290 (LE197_17290) | 3610993..3611541 | + | 549 | WP_016851606.1 | DUF3158 family protein | - |
| LE197_RS17295 (LE197_17295) | 3611589..3612419 | + | 831 | WP_012076855.1 | phage regulatory protein | - |
| LE197_RS17300 (LE197_17300) | 3612449..3612907 | + | 459 | WP_016851607.1 | single-stranded DNA-binding protein | - |
| LE197_RS17305 (LE197_17305) | 3613013..3613207 | + | 195 | WP_016851608.1 | hypothetical protein | - |
| LE197_RS17310 (LE197_17310) | 3613422..3613619 | + | 198 | WP_071533909.1 | CrpP family ICE-associated protein | - |
| LE197_RS17315 (LE197_17315) | 3613735..3614469 | + | 735 | WP_226034086.1 | toprim domain-containing protein | - |
| LE197_RS17320 (LE197_17320) | 3614551..3614841 | + | 291 | WP_004423344.1 | IS66 family transposase ISAba28 | Transposase |
| LE197_RS17330 (LE197_17330) | 3615302..3616840 | + | 1539 | WP_011911868.1 | IS66 family transposase ISAba28 | Transposase |
| LE197_RS17335 (LE197_17335) | 3616830..3617099 | + | 270 | WP_003458515.1 | hypothetical protein | - |
| LE197_RS36900 | 3617405..3617578 | - | 174 | Protein_3453 | DNA topoisomerase | - |
| LE197_RS17340 (LE197_17340) | 3617664..3618275 | - | 612 | Protein_3454 | DNA topoisomerase | - |
| LE197_RS17345 (LE197_17345) | 3618293..3618562 | - | 270 | WP_003458515.1 | hypothetical protein | - |
| LE197_RS17350 (LE197_17350) | 3618552..3620090 | - | 1539 | WP_011911868.1 | IS66 family transposase ISAba28 | Transposase |
| LE197_RS17360 (LE197_17360) | 3620552..3620842 | - | 291 | WP_004423344.1 | IS66 family transposase ISAba28 | Transposase |
| LE197_RS17365 (LE197_17365) | 3620906..3622222 | + | 1317 | WP_226034087.1 | hypothetical protein | - |
| LE197_RS17370 (LE197_17370) | 3622219..3624195 | + | 1977 | WP_016851611.1 | DEAD/DEAH box helicase | - |
| LE197_RS36905 | 3624205..3624339 | + | 135 | WP_255253641.1 | hypothetical protein | - |
| LE197_RS17375 (LE197_17375) | 3624336..3624680 | + | 345 | WP_226034088.1 | hypothetical protein | - |
| LE197_RS17380 (LE197_17380) | 3624720..3625700 | + | 981 | WP_019437692.1 | IS5 family transposase ISPpu21 | Transposase |
| LE197_RS17385 (LE197_17385) | 3625946..3626236 | - | 291 | WP_003448662.1 | putative addiction module antidote protein | Antitoxin Detail |
| LE197_RS17390 (LE197_17390) | 3626233..3626532 | - | 300 | WP_003120987.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LE197_RS17395 (LE197_17395) | 3626734..3627306 | + | 573 | WP_226034089.1 | hypothetical protein | VF |
| LE197_RS17400 (LE197_17400) | 3627523..3627723 | + | 201 | WP_226034109.1 | TcpQ domain-containing protein | - |
| LE197_RS17405 | 3628308..3628691 | + | 384 | Protein_3467 | secretin N-terminal domain-containing protein | - |
| LE197_RS17410 | 3628804..3629562 | + | 759 | WP_226034090.1 | hypothetical protein | VF |
| LE197_RS17415 (LE197_17410) | 3629566..3630891 | + | 1326 | WP_003099758.1 | type 4b pilus protein PilO2 | - |
| LE197_RS17420 (LE197_17415) | 3630881..3631414 | + | 534 | WP_003099760.1 | type IV pilus biogenesis protein PilP | - |
| LE197_RS17425 (LE197_17420) | 3631729..3633002 | + | 1274 | Protein_3471 | hypothetical protein | VF |
| LE197_RS17430 (LE197_17425) | 3633002..3633985 | + | 984 | WP_226034091.1 | hypothetical protein | VF |
| LE197_RS17435 (LE197_17430) | 3634102..3634632 | + | 531 | WP_003120996.1 | type 4 pilus major pilin | - |
| LE197_RS17440 (LE197_17435) | 3634629..3635585 | + | 957 | WP_003448639.1 | hypothetical protein | VF |
| LE197_RS17445 (LE197_17440) | 3635677..3636554 | + | 878 | Protein_3475 | hypothetical protein | VF |
| LE197_RS17450 (LE197_17445) | 3636648..3636956 | + | 309 | WP_134303573.1 | hypothetical protein | - |
| LE197_RS17455 (LE197_17450) | 3636974..3637411 | + | 438 | WP_003120998.1 | hypothetical protein | VF |
| LE197_RS17460 (LE197_17455) | 3638333..3638899 | + | 567 | WP_003120999.1 | hypothetical protein | - |
| LE197_RS17465 (LE197_17460) | 3638976..3639155 | + | 180 | WP_004347955.1 | hypothetical protein | - |
| LE197_RS36910 | 3639157..3639291 | + | 135 | WP_003121000.1 | hypothetical protein | - |
| LE197_RS17470 (LE197_17465) | 3639614..3640102 | + | 489 | WP_003448595.1 | STY4534 family ICE replication protein | - |
| LE197_RS17475 (LE197_17470) | 3640240..3640398 | + | 159 | WP_003121002.1 | hypothetical protein | - |
| LE197_RS17480 (LE197_17475) | 3640472..3640669 | + | 198 | WP_003448593.1 | hypothetical protein | - |
| LE197_RS17485 (LE197_17480) | 3640861..3641574 | + | 714 | WP_003121003.1 | hypothetical protein | - |
| LE197_RS17490 (LE197_17485) | 3641810..3642160 | + | 351 | WP_003099791.1 | hypothetical protein | - |
| LE197_RS17495 (LE197_17490) | 3642217..3642849 | + | 633 | WP_003158170.1 | DUF3275 family protein | - |
| LE197_RS17500 (LE197_17495) | 3642846..3643121 | + | 276 | WP_003117060.1 | hypothetical protein | - |
| LE197_RS17505 (LE197_17500) | 3643191..3643553 | + | 363 | WP_003117061.1 | hypothetical protein | - |
| LE197_RS17510 (LE197_17505) | 3643621..3643875 | + | 255 | WP_003117062.1 | hypothetical protein | - |
| LE197_RS17515 (LE197_17510) | 3643968..3644572 | + | 605 | Protein_3490 | hypothetical protein | - |
| LE197_RS17520 (LE197_17515) | 3644602..3646047 | + | 1446 | WP_226034092.1 | DUF6094 domain-containing protein | - |
| LE197_RS17525 (LE197_17520) | 3646152..3647156 | + | 1005 | Protein_3492 | SNF2-related protein | - |
| LE197_RS17530 (LE197_17525) | 3647773..3649489 | + | 1717 | Protein_3493 | group II intron reverse transcriptase/maturase | - |
| LE197_RS17535 (LE197_17530) | 3649572..3650816 | + | 1245 | Protein_3494 | DEAD/DEAH box helicase | - |
| LE197_RS17540 (LE197_17535) | 3651099..3651977 | + | 879 | Protein_3495 | hypothetical protein | VF |
| LE197_RS17545 (LE197_17540) | 3652109..3652861 | + | 753 | WP_052180567.1 | 2OG-Fe(II) oxygenase | - |
| LE197_RS17550 (LE197_17545) | 3652871..3653518 | + | 648 | WP_042933787.1 | DNA oxidative demethylase AlkB | - |
| LE197_RS17555 (LE197_17550) | 3653549..3653779 | + | 231 | WP_042933788.1 | hypothetical protein | - |
| LE197_RS17560 (LE197_17555) | 3653824..3654375 | + | 552 | WP_042933789.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| LE197_RS17565 (LE197_17560) | 3654378..3655013 | + | 636 | WP_042933790.1 | DNA-3-methyladenine glycosylase | - |
| LE197_RS17570 (LE197_17565) | 3655096..3656217 | + | 1122 | WP_052180568.1 | hypothetical protein | VF |
| LE197_RS17575 (LE197_17570) | 3656193..3656849 | + | 657 | WP_052180569.1 | 2OG-Fe(II) oxygenase | - |
| LE197_RS17580 (LE197_17575) | 3656839..3657129 | + | 291 | WP_042933791.1 | Ada metal-binding domain-containing protein | - |
| LE197_RS17585 (LE197_17580) | 3657283..3658482 | - | 1200 | WP_058171242.1 | acyltransferase | - |
| LE197_RS17590 (LE197_17585) | 3658510..3659256 | - | 747 | WP_042933793.1 | hypothetical protein | VF |
| LE197_RS17595 (LE197_17590) | 3659312..3661024 | - | 1713 | WP_042933794.1 | GMC family oxidoreductase | - |
| LE197_RS17600 (LE197_17595) | 3661092..3661856 | - | 765 | WP_042933795.1 | hypothetical protein | VF |
| LE197_RS17605 (LE197_17600) | 3661891..3662619 | - | 729 | WP_042933796.1 | cupin domain-containing protein | - |
| LE197_RS17610 (LE197_17605) | 3662650..3664380 | - | 1731 | WP_052180570.1 | FAD-dependent monooxygenase | - |
| LE197_RS17615 (LE197_17610) | 3664401..3665114 | - | 714 | WP_052180571.1 | class I SAM-dependent methyltransferase | - |
| LE197_RS17620 (LE197_17615) | 3665143..3667590 | - | 2448 | WP_052180572.1 | AMP-binding protein | - |
| LE197_RS17625 (LE197_17620) | 3667638..3668435 | - | 798 | WP_042933797.1 | hypothetical protein | - |
| LE197_RS17630 (LE197_17625) | 3668444..3669769 | - | 1326 | WP_079389511.1 | 3-dehydroquinate synthase II | - |
| LE197_RS17635 (LE197_17630) | 3670618..3670839 | + | 222 | Protein_3514 | IS5 family transposase ISPst8 | Transposase |
| LE197_RS17640 (LE197_17635) | 3670836..3671717 | + | 882 | Protein_3515 | ATP-binding domain-containing protein | - |
| LE197_RS17645 (LE197_17640) | 3671716..3671868 | + | 153 | Protein_3516 | PAAR domain-containing protein | - |
| LE197_RS17650 (LE197_17645) | 3671871..3672290 | + | 420 | WP_128666259.1 | hypothetical protein | - |
| LE197_RS17655 (LE197_17650) | 3672697..3673389 | + | 693 | WP_058171243.1 | hypothetical protein | - |
| LE197_RS17660 (LE197_17655) | 3673400..3674155 | + | 756 | WP_073662702.1 | TIGR03759 family integrating conjugative element protein | - |
| LE197_RS17665 (LE197_17660) | 3674140..3674721 | + | 582 | WP_073662701.1 | hypothetical protein | VF |
| LE197_RS17670 (LE197_17665) | 3674718..3675218 | + | 501 | WP_058343493.1 | integrating conjugative element protein | - |
| LE197_RS17675 (LE197_17670) | 3675227..3675496 | + | 270 | WP_009316303.1 | hypothetical protein | - |
| LE197_RS17680 (LE197_17675) | 3675500..3677731 | + | 2232 | WP_128666258.1 | type IV conjugative transfer system coupling protein TraD | - |
| LE197_RS17685 (LE197_17680) | 3677731..3678477 | + | 747 | WP_009316301.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| LE197_RS17690 (LE197_17685) | 3678488..3679969 | + | 1482 | WP_009316300.1 | UvrD-helicase domain-containing protein | - |
| LE197_RS17695 (LE197_17690) | 3680078..3680383 | + | 306 | WP_009316299.1 | hypothetical protein | - |
| LE197_RS17700 (LE197_17695) | 3680477..3680815 | + | 339 | WP_020750393.1 | RAQPRD family integrative conjugative element protein | - |
| LE197_RS17705 (LE197_17700) | 3680812..3681051 | + | 240 | WP_003099839.1 | TIGR03758 family integrating conjugative element protein | - |
| LE197_RS17710 (LE197_17705) | 3681069..3681425 | + | 357 | WP_009316297.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| LE197_RS17715 (LE197_17710) | 3681436..3681822 | + | 387 | WP_196663982.1 | TIGR03750 family conjugal transfer protein | - |
| LE197_RS17720 (LE197_17715) | 3681819..3682478 | + | 660 | WP_003109400.1 | TIGR03746 family integrating conjugative element protein | - |
| LE197_RS17725 (LE197_17720) | 3682475..3683359 | + | 885 | WP_003109401.1 | TIGR03749 family integrating conjugative element protein | - |
| LE197_RS17730 (LE197_17725) | 3683343..3684848 | + | 1506 | WP_020751098.1 | TIGR03752 family integrating conjugative element protein | - |
| LE197_RS17735 (LE197_17730) | 3684826..3685269 | + | 444 | WP_020751099.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| LE197_RS17740 (LE197_17735) | 3685269..3688211 | + | 2943 | WP_196663983.1 | conjugative transfer ATPase | - |
| LE197_RS17745 (LE197_17740) | 3688208..3688492 | + | 285 | WP_003158152.1 | hypothetical protein | - |
| LE197_RS17750 (LE197_17745) | 3688489..3689145 | + | 657 | WP_226034093.1 | DsbA family protein | - |
| LE197_RS17755 (LE197_17750) | 3689142..3689360 | - | 219 | WP_003109406.1 | hypothetical protein | - |
| LE197_RS17760 (LE197_17755) | 3690178..3690807 | - | 630 | WP_171902868.1 | hypothetical protein | - |
| LE197_RS17765 (LE197_17760) | 3691502..3691933 | + | 432 | WP_003111736.1 | TIGR03757 family integrating conjugative element protein | - |
| LE197_RS17770 (LE197_17765) | 3691933..3692871 | + | 939 | WP_016851627.1 | TIGR03756 family integrating conjugative element protein | - |
| LE197_RS17775 (LE197_17770) | 3692889..3694271 | + | 1383 | WP_023122674.1 | integrating conjugative element protein | - |
| LE197_RS17780 (LE197_17775) | 3694271..3694618 | + | 348 | WP_016851629.1 | hypothetical protein | - |
| LE197_RS17785 (LE197_17780) | 3694615..3696129 | + | 1515 | WP_016851630.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LE197_RS17790 (LE197_17785) | 3696155..3696478 | - | 324 | WP_071536355.1 | hypothetical protein | - |
| LE197_RS17795 (LE197_17790) | 3696597..3696869 | + | 273 | WP_003111730.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| LE197_RS17800 (LE197_17795) | 3696873..3697226 | + | 354 | WP_003111729.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LE197_RS17805 (LE197_17800) | 3697253..3698167 | - | 915 | WP_003119431.1 | hypothetical protein | - |
| LE197_RS17810 (LE197_17805) | 3698193..3698432 | - | 240 | WP_010792230.1 | hypothetical protein | - |
| LE197_RS17820 (LE197_17815) | 3700115..3702034 | + | 1920 | WP_016852953.1 | MobH family relaxase | - |
| LE197_RS17825 (LE197_17820) | 3702031..3703311 | + | 1281 | WP_016852952.1 | hypothetical protein ; Integrase | Integrase |
| LE197_RS17835 (LE197_17830) | 3703817..3704491 | - | 675 | WP_003111415.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| LE197_RS17840 (LE197_17835) | 3704507..3705154 | - | 648 | WP_226034094.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| LE197_RS17845 (LE197_17840) | 3705374..3706198 | - | 825 | WP_012614422.1 | tol-pal system protein YbgF | - |
| LE197_RS17850 (LE197_17845) | 3706208..3706714 | - | 507 | WP_003111417.1 | peptidoglycan-associated lipoprotein Pal | - |
| LE197_RS17855 (LE197_17850) | 3706767..3708065 | - | 1299 | WP_003086128.1 | Tol-Pal system beta propeller repeat protein TolB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|