MGE detailed information
MGE type: Genomic_island MGE length: 52756 bp
Accession: NZ_CP084413 Location: 1387882..1440637 Organism: Pseudomonas sp. HS-18 Replicon: chromosome
Accession: NZ_CP084413 Location: 1387882..1440637 Organism: Pseudomonas sp. HS-18 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDJ84_RS06485 (LDJ84_06485) | 1382936..1383313 | + | 378 | WP_024767555.1 | RidA family protein | - |
| LDJ84_RS06490 (LDJ84_06490) | 1383622..1384137 | + | 516 | WP_024767556.1 | hypothetical protein | - |
| LDJ84_RS06495 (LDJ84_06495) | 1384198..1385037 | + | 840 | WP_226046088.1 | DUF692 domain-containing protein | - |
| LDJ84_RS06500 (LDJ84_06500) | 1385030..1385818 | + | 789 | WP_024767558.1 | putative DNA-binding domain-containing protein | - |
| LDJ84_RS06505 (LDJ84_06505) | 1385815..1386237 | + | 423 | WP_226046089.1 | organic hydroperoxide resistance protein | - |
| LDJ84_RS06510 (LDJ84_06510) | 1386376..1387800 | - | 1425 | WP_226046562.1 | PLP-dependent aminotransferase family protein | - |
| LDJ84_RS06515 (LDJ84_06515) | 1387882..1388823 | + | 942 | WP_226046090.1 | EamA family transporter | - |
| LDJ84_RS06520 (LDJ84_06520) | 1388891..1389400 | - | 510 | WP_084358315.1 | DoxX family protein | - |
| LDJ84_RS06525 (LDJ84_06525) | 1389476..1390114 | - | 639 | WP_226046091.1 | hypothetical protein | - |
| LDJ84_RS06530 (LDJ84_06530) | 1390251..1391561 | - | 1311 | WP_226046092.1 | HAMP domain-containing sensor histidine kinase | - |
| LDJ84_RS06535 (LDJ84_06535) | 1391558..1392298 | - | 741 | WP_024767564.1 | Transcriptional regulatory protein OmpR | VF |
| LDJ84_RS06540 (LDJ84_06540) | 1392524..1392796 | + | 273 | WP_226046093.1 | DUF2790 domain-containing protein | - |
| LDJ84_RS06545 (LDJ84_06545) | 1392890..1394110 | + | 1221 | WP_226046094.1 | cytochrome c biogenesis protein DipZ | - |
| LDJ84_RS06550 (LDJ84_06550) | 1394142..1394438 | - | 297 | WP_037011255.1 | putative addiction module antidote protein | Antitoxin Detail |
| LDJ84_RS06555 (LDJ84_06555) | 1394423..1394731 | - | 309 | WP_226046095.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LDJ84_RS06560 (LDJ84_06560) | 1394848..1396695 | - | 1848 | WP_226046096.1 | diguanylate cyclase | - |
| LDJ84_RS06565 (LDJ84_06565) | 1396977..1397111 | - | 135 | Protein_1298 | LysR family transcriptional regulator | - |
| LDJ84_RS06570 (LDJ84_06570) | 1397314..1399827 | - | 2514 | WP_034004688.1 | S8 family peptidase | - |
| LDJ84_RS06575 (LDJ84_06575) | 1399805..1400836 | - | 1032 | WP_033982009.1 | ATP-dependent zinc metalloprotease FtsH | VF |
| LDJ84_RS06580 (LDJ84_06580) | 1400829..1401146 | - | 318 | WP_023464296.1 | helix-turn-helix transcriptional regulator | - |
| LDJ84_RS06585 (LDJ84_06585) | 1401281..1402171 | - | 891 | WP_033982007.1 | LysR family transcriptional regulator | - |
| LDJ84_RS06590 (LDJ84_06590) | 1402404..1403312 | + | 909 | WP_088142968.1 | WYL domain-containing protein | - |
| LDJ84_RS06595 (LDJ84_06595) | 1403325..1404437 | + | 1113 | WP_226046097.1 | SNF2-related protein | - |
| LDJ84_RS06600 (LDJ84_06600) | 1404442..1405809 | + | 1368 | WP_226046098.1 | C-terminal helicase domain-containing protein | - |
| LDJ84_RS06605 (LDJ84_06605) | 1405824..1407218 | + | 1395 | WP_226046099.1 | DUF262 domain-containing protein | - |
| LDJ84_RS06610 (LDJ84_06610) | 1407158..1408627 | + | 1470 | WP_226046100.1 | hypothetical protein | - |
| LDJ84_RS06615 (LDJ84_06615) | 1408624..1411968 | + | 3345 | WP_033981972.1 | DUF2357 domain-containing protein | - |
| LDJ84_RS06620 (LDJ84_06620) | 1411994..1413853 | - | 1860 | WP_033981969.1 | MobH family relaxase | - |
| LDJ84_RS06625 (LDJ84_06625) | 1414162..1414479 | + | 318 | WP_033981967.1 | type II toxin-antitoxin system PrlF family antitoxin | - |
| LDJ84_RS06630 (LDJ84_06630) | 1414479..1414937 | + | 459 | WP_033981966.1 | type II toxin-antitoxin system YhaV family toxin | - |
| LDJ84_RS06635 (LDJ84_06635) | 1414965..1415330 | + | 366 | WP_226046101.1 | DUF3742 family protein | - |
| LDJ84_RS06640 (LDJ84_06640) | 1415342..1416862 | - | 1521 | WP_033981962.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LDJ84_RS06645 (LDJ84_06645) | 1416878..1417249 | - | 372 | WP_033981961.1 | hypothetical protein | - |
| LDJ84_RS06650 (LDJ84_06650) | 1417246..1418664 | - | 1419 | WP_033981960.1 | integrating conjugative element protein | - |
| LDJ84_RS06655 (LDJ84_06655) | 1418675..1419622 | - | 948 | WP_226046102.1 | TIGR03756 family integrating conjugative element protein | - |
| LDJ84_RS06660 (LDJ84_06660) | 1419619..1420065 | - | 447 | WP_033981958.1 | TIGR03757 family integrating conjugative element protein | - |
| LDJ84_RS06665 (LDJ84_06665) | 1420230..1420724 | - | 495 | WP_033981957.1 | JAB domain-containing protein | - |
| LDJ84_RS06670 (LDJ84_06670) | 1420918..1421682 | - | 765 | WP_033981956.1 | thioredoxin domain-containing protein | - |
| LDJ84_RS06675 (LDJ84_06675) | 1421698..1424607 | - | 2910 | WP_033981955.1 | conjugative transfer ATPase | - |
| LDJ84_RS06680 (LDJ84_06680) | 1424607..1425056 | - | 450 | WP_050159774.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| LDJ84_RS06685 (LDJ84_06685) | 1425037..1426446 | - | 1410 | WP_088138680.1 | TIGR03752 family integrating conjugative element protein | - |
| LDJ84_RS06690 (LDJ84_06690) | 1426436..1427365 | - | 930 | WP_088138681.1 | TIGR03749 family integrating conjugative element protein | - |
| LDJ84_RS06695 (LDJ84_06695) | 1427362..1428054 | - | 693 | WP_226046103.1 | TIGR03746 family integrating conjugative element protein | - |
| LDJ84_RS06700 (LDJ84_06700) | 1428051..1428461 | - | 411 | WP_033981950.1 | TIGR03750 family conjugal transfer protein | - |
| LDJ84_RS06705 (LDJ84_06705) | 1428475..1428834 | - | 360 | WP_033981949.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| LDJ84_RS06710 (LDJ84_06710) | 1428851..1429084 | - | 234 | WP_022579861.1 | TIGR03758 family integrating conjugative element protein | - |
| LDJ84_RS06715 (LDJ84_06715) | 1429081..1429464 | - | 384 | WP_033981946.1 | RAQPRD family integrative conjugative element protein | - |
| LDJ84_RS06725 (LDJ84_06725) | 1430066..1431061 | + | 996 | WP_033981944.1 | restriction endonuclease | - |
| LDJ84_RS06730 (LDJ84_06730) | 1431058..1432146 | + | 1089 | WP_033981942.1 | hypothetical protein | - |
| LDJ84_RS06735 (LDJ84_06735) | 1432143..1432637 | + | 495 | WP_033981941.1 | hypothetical protein | - |
| LDJ84_RS06740 (LDJ84_06740) | 1432634..1434511 | + | 1878 | WP_033981940.1 | ATP-binding protein | - |
| LDJ84_RS06745 (LDJ84_06745) | 1434603..1435352 | - | 750 | WP_033981937.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| LDJ84_RS06750 (LDJ84_06750) | 1435349..1437532 | - | 2184 | WP_033981934.1 | type IV conjugative transfer system coupling protein TraD | - |
| LDJ84_RS06755 (LDJ84_06755) | 1437537..1438085 | - | 549 | WP_033981931.1 | integrating conjugative element protein | - |
| LDJ84_RS06760 (LDJ84_06760) | 1438082..1438687 | - | 606 | WP_041025077.1 | transglycosylase SLT domain-containing protein | - |
| LDJ84_RS06765 (LDJ84_06765) | 1438669..1439406 | - | 738 | WP_226046104.1 | TIGR03759 family integrating conjugative element protein | - |
| LDJ84_RS06770 (LDJ84_06770) | 1439421..1440062 | - | 642 | WP_033981922.1 | hypothetical protein | - |
| LDJ84_RS06775 (LDJ84_06775) | 1440059..1440637 | - | 579 | WP_033981919.1 | hypothetical protein | VF |
| LDJ84_RS06780 (LDJ84_06780) | 1440871..1443150 | - | 2280 | WP_033981918.1 | helicase-related protein | - |
| LDJ84_RS06785 (LDJ84_06785) | 1443286..1443597 | - | 312 | WP_033981916.1 | hypothetical protein | - |
| LDJ84_RS06790 (LDJ84_06790) | 1443698..1444819 | - | 1122 | WP_003158626.1 | DUF6094 domain-containing protein | - |
| LDJ84_RS06795 (LDJ84_06795) | 1444884..1445534 | - | 651 | WP_003158625.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|