MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 106780 bp
Accession: NZ_CP084406 Location: 478112..584891 Organism: Sphingobium sp. CFD-2 Replicon: chromosome
Accession: NZ_CP084406 Location: 478112..584891 Organism: Sphingobium sp. CFD-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB29_RS22420 | 473416..475311 | + | 1896 | WP_222887765.1 | potassium transporter Kup | - |
| LDB29_RS22425 | 475444..476154 | - | 711 | WP_025549818.1 | response regulator transcription factor | - |
| LDB29_RS22430 | 476151..478811 | - | 2661 | WP_257557955.1 | sensor histidine kinase KdpD | - |
| LDB29_RS22435 | 478999..479766 | - | 768 | WP_054944222.1 | IS21 family transposase ISSsp5 | Transposase |
| LDB29_RS22440 | 479763..481217 | - | 1455 | WP_218036328.1 | IS21 family transposase ISSsp5 | Transposase |
| LDB29_RS22445 | 481356..481721 | - | 366 | WP_257557956.1 | DUF3391 domain-containing protein | - |
| LDB29_RS22450 | 482010..483449 | - | 1440 | WP_257557957.1 | Solvent efflux pump outer membrane protein SrpC | VF |
| LDB29_RS22455 | 483460..485016 | - | 1557 | WP_257557958.1 | Multidrug export protein EmrB | VF |
| LDB29_RS22460 | 485013..486179 | - | 1167 | WP_257557960.1 | Multidrug export protein EmrA | VF |
| LDB29_RS22465 | 486260..486691 | + | 432 | WP_025549807.1 | MarR family transcriptional regulator | - |
| LDB29_RS22470 | 486942..488795 | - | 1854 | WP_257557962.1 | dihydroxy-acid dehydratase | - |
| LDB29_RS22475 | 488896..489801 | + | 906 | WP_061938173.1 | HTH-type transcriptional regulator BenM | VF |
| LDB29_RS22480 | 489806..490603 | - | 798 | WP_025549805.1 | DUF2189 domain-containing protein | - |
| LDB29_RS22485 | 490938..493853 | + | 2916 | WP_257557965.1 | TonB-dependent receptor | - |
| LDB29_RS22490 | 493870..494910 | + | 1041 | WP_082718727.1 | ABC transporter substrate-binding protein | - |
| LDB29_RS22495 | 494935..495726 | - | 792 | WP_257557967.1 | N-acyl homoserine lactonase family protein | - |
| LDB29_RS22500 | 495758..496639 | - | 882 | WP_257557968.1 | NAD(P)-dependent oxidoreductase | - |
| LDB29_RS22505 | 496674..497471 | - | 798 | WP_257557969.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| LDB29_RS22510 | 497464..498810 | - | 1347 | WP_257557970.1 | MmgE/PrpD family protein | - |
| LDB29_RS22515 | 499033..499578 | - | 546 | WP_257557971.1 | carboxymuconolactone decarboxylase family protein | - |
| LDB29_RS22520 | 499896..500672 | + | 777 | WP_257557972.1 | 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase | VF |
| LDB29_RS22525 | 500763..502136 | + | 1374 | WP_257557973.1 | MFS transporter | - |
| LDB29_RS22530 | 502136..503089 | + | 954 | WP_257557974.1 | alpha/beta hydrolase | - |
| LDB29_RS22535 | 503110..504024 | + | 915 | WP_257557975.1 | amidohydrolase family protein | - |
| LDB29_RS22540 | 504014..504826 | + | 813 | WP_257557976.1 | amidohydrolase family protein | - |
| LDB29_RS22545 | 504814..505269 | - | 456 | WP_025551176.1 | PaaI family thioesterase | - |
| LDB29_RS22550 | 505352..506278 | + | 927 | WP_061938208.1 | 3-keto-5-aminohexanoate cleavage protein | - |
| LDB29_RS22555 | 506388..507764 | - | 1377 | WP_044660634.1 | Putative niacin/nicotinamide transporter NaiP | VF |
| LDB29_RS22560 | 508313..511243 | + | 2931 | WP_025551926.1 | TonB-dependent receptor | - |
| LDB29_RS22565 | 511273..512175 | + | 903 | WP_257557977.1 | hypothetical protein | - |
| LDB29_RS22570 | 512186..512962 | + | 777 | WP_257557978.1 | aldolase/citrate lyase family protein | - |
| LDB29_RS22575 | 512979..513917 | + | 939 | WP_257557979.1 | DUF6282 family protein | - |
| LDB29_RS22580 | 514093..515070 | + | 978 | WP_064232704.1 | LacI family DNA-binding transcriptional regulator | - |
| LDB29_RS22585 | 515253..515639 | - | 387 | WP_044660637.1 | carboxymuconolactone decarboxylase family protein | - |
| LDB29_RS22590 | 515763..516512 | + | 750 | WP_257557980.1 | 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase | VF |
| LDB29_RS22595 | 516650..518272 | - | 1623 | WP_257557982.1 | thiamine pyrophosphate-binding protein | - |
| LDB29_RS22600 | 518315..519229 | - | 915 | WP_207212580.1 | TauD/TfdA family dioxygenase | - |
| LDB29_RS22605 | 519319..520788 | - | 1470 | WP_257557987.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| LDB29_RS22610 | 520788..521264 | - | 477 | WP_025551965.1 | hypothetical protein | - |
| LDB29_RS22615 | 521444..523324 | + | 1881 | WP_257557990.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| LDB29_RS22620 | 523321..524772 | + | 1452 | WP_025551962.1 | MFS transporter | - |
| LDB29_RS22625 | 524985..526652 | - | 1668 | WP_257557993.1 | thiamine pyrophosphate-binding protein | - |
| LDB29_RS22630 | 526645..527391 | - | 747 | WP_257557995.1 | cyclase family protein | - |
| LDB29_RS22635 | 527413..528903 | - | 1491 | WP_257557997.1 | aldehyde dehydrogenase | - |
| LDB29_RS22640 | 529327..529581 | + | 255 | WP_257541693.1 | plasmid stabilization protein | Antitoxin Detail |
| LDB29_RS22645 | 529578..529985 | + | 408 | WP_257541695.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LDB29_RS22650 | 530041..530331 | + | 291 | WP_257541697.1 | putative quinol monooxygenase | - |
| LDB29_RS22655 | 531057..532511 | + | 1455 | WP_218036328.1 | IS21 family transposase ISSsp5 | Transposase |
| LDB29_RS22660 | 532508..533275 | + | 768 | WP_054944222.1 | IS21 family transposase ISSsp5 | Transposase |
| LDB29_RS22665 | 533421..534392 | + | 972 | WP_257557999.1 | diiron oxygenase | - |
| LDB29_RS22670 | 534411..534602 | + | 192 | WP_257541700.1 | rubredoxin | - |
| LDB29_RS22675 | 534659..535972 | - | 1314 | WP_257541702.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| LDB29_RS22680 | 536024..536902 | + | 879 | WP_257558001.1 | glutamine amidotransferase | - |
| LDB29_RS22685 | 536940..537152 | + | 213 | Protein_469 | serine hydroxymethyltransferase | - |
| LDB29_RS22690 | 537433..538167 | + | 735 | WP_257541706.1 | hypothetical protein | - |
| LDB29_RS22695 | 538191..538817 | + | 627 | WP_257541708.1 | GTP cyclohydrolase I FolE | - |
| LDB29_RS22700 | 538814..540022 | + | 1209 | WP_257541710.1 | MFS transporter | - |
| LDB29_RS22705 | 540104..540523 | + | 420 | Protein_473 | ArdC-like ssDNA-binding domain-containing protein | - |
| LDB29_RS22710 | 541027..543078 | + | 2052 | WP_257558003.1 | reverse transcriptase/maturase family protein | - |
| LDB29_RS22715 | 543102..543632 | + | 531 | Protein_475 | zincin-like metallopeptidase domain-containing protein | - |
| LDB29_RS22720 | 543632..544579 | + | 948 | WP_257541714.1 | hypothetical protein | - |
| LDB29_RS22725 | 544739..546868 | + | 2130 | WP_257541716.1 | ParB/RepB/Spo0J family partition protein | - |
| LDB29_RS22730 | 546968..547444 | + | 477 | WP_257558005.1 | hypothetical protein | - |
| LDB29_RS22735 | 547669..547830 | + | 162 | WP_257541720.1 | hypothetical protein | - |
| LDB29_RS22740 | 548249..548413 | + | 165 | WP_257541723.1 | hypothetical protein | - |
| LDB29_RS22745 | 548614..549162 | + | 549 | WP_257541725.1 | hypothetical protein | - |
| LDB29_RS22750 | 549228..549644 | + | 417 | WP_257541727.1 | hypothetical protein | - |
| LDB29_RS22755 | 549637..550281 | + | 645 | WP_257541729.1 | antitoxin of toxin-antitoxin stability system | - |
| LDB29_RS22760 | 550288..550677 | - | 390 | WP_257541732.1 | type II toxin-antitoxin system VapC family toxin | - |
| LDB29_RS22765 | 550664..550939 | - | 276 | WP_257541734.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| LDB29_RS22770 | 551106..555455 | + | 4350 | WP_257558007.1 | strawberry notch family protein | - |
| LDB29_RS22775 | 555456..556493 | + | 1038 | WP_257541738.1 | toprim domain-containing protein | - |
| LDB29_RS22780 | 556826..557758 | + | 933 | WP_257542033.1 | DUF2493 domain-containing protein | - |
| LDB29_RS22785 | 557924..558340 | + | 417 | WP_257541741.1 | hypothetical protein | - |
| LDB29_RS22790 | 559067..559468 | + | 402 | WP_257541743.1 | single-stranded DNA-binding protein | - |
| LDB29_RS22795 | 559718..559933 | + | 216 | WP_257541745.1 | DUF6499 domain-containing protein | - |
| LDB29_RS22800 | 559980..560501 | + | 522 | WP_257541747.1 | DUF2285 domain-containing protein | - |
| LDB29_RS22805 | 560541..560834 | - | 294 | WP_257541749.1 | DUF2285 domain-containing protein | - |
| LDB29_RS22810 | 561303..561569 | + | 267 | WP_257542035.1 | helix-turn-helix domain-containing protein | - |
| LDB29_RS22815 | 561570..562610 | + | 1041 | WP_257541751.1 | replication initiator protein A | - |
| LDB29_RS22820 | 562607..563260 | + | 654 | WP_257541753.1 | Sporulation initiation inhibitor protein Soj | VF |
| LDB29_RS22825 | 563257..563511 | + | 255 | WP_257541755.1 | hypothetical protein | - |
| LDB29_RS22830 | 563508..564026 | + | 519 | WP_257541757.1 | DUF2840 domain-containing protein | - |
| LDB29_RS22835 | 564023..564568 | + | 546 | WP_257541760.1 | S26 family signal peptidase | - |
| LDB29_RS22840 | 564636..564983 | + | 348 | WP_257541762.1 | DUF736 domain-containing protein | - |
| LDB29_RS22845 | 564980..565912 | + | 933 | WP_257541764.1 | lytic transglycosylase domain-containing protein | - |
| LDB29_RS22850 | 565909..566229 | + | 321 | WP_257558009.1 | hypothetical protein | - |
| LDB29_RS22855 | 567168..568289 | + | 1122 | WP_257542037.1 | DUF3363 domain-containing protein | - |
| LDB29_RS22860 | 568278..568796 | - | 519 | WP_257541767.1 | MarR family transcriptional regulator | - |
| LDB29_RS22865 | 568894..569808 | + | 915 | WP_257541770.1 | DMT family transporter | - |
| LDB29_RS22870 | 569808..570953 | + | 1146 | WP_257541772.1 | MFS transporter | - |
| LDB29_RS22875 | 570994..572430 | - | 1437 | WP_257541774.1 | PLP-dependent aminotransferase family protein | - |
| LDB29_RS22880 | 572544..572780 | + | 237 | WP_257541776.1 | thioredoxin family protein | - |
| LDB29_RS22885 | 572807..573511 | + | 705 | WP_257541778.1 | glutamine amidotransferase | - |
| LDB29_RS22890 | 573508..574755 | + | 1248 | WP_257541781.1 | serine hydroxymethyltransferase | - |
| LDB29_RS22895 | 574748..575482 | + | 735 | WP_257541783.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| LDB29_RS22900 | 575482..576309 | + | 828 | WP_257541785.1 | pyridoxal kinase | - |
| LDB29_RS22905 | 576318..577606 | + | 1289 | Protein_513 | 5-aminolevulinate synthase | VF |
| LDB29_RS22910 | 577593..578846 | + | 1254 | WP_257541787.1 | MFS transporter | - |
| LDB29_RS22915 | 578927..579826 | + | 900 | WP_257541789.1 | HTH-type transcriptional regulator BenM | VF |
| LDB29_RS22920 | 579980..581968 | + | 1989 | WP_257541791.1 | Conjugal transfer protein TraG | VF |
| LDB29_RS22925 | 581979..582440 | + | 462 | WP_257541793.1 | CopG family transcriptional regulator | - |
| LDB29_RS22930 | 582584..583576 | + | 993 | WP_257541795.1 | Type IV secretion system protein VirB11 | VF |
| LDB29_RS22935 | 583573..583905 | + | 333 | WP_257541798.1 | TrbC/VirB2 family protein | - |
| LDB29_RS22940 | 583905..584186 | + | 282 | WP_257541800.1 | VirB3 family type IV secretion system protein | - |
| LDB29_RS22945 | 584198..586654 | + | 2457 | WP_257541802.1 | conjugal transfer protein TrbE | - |
| LDB29_RS22950 | 586651..587433 | + | 783 | WP_257541804.1 | P-type conjugative transfer protein TrbJ | - |
| LDB29_RS22955 | 587454..587741 | + | 288 | WP_257541806.1 | putative entry exclusion protein TrbK-alt | - |
| LDB29_RS22960 | 587745..589103 | + | 1359 | WP_257541808.1 | P-type conjugative transfer protein TrbL | - |
| LDB29_RS22965 | 589100..589789 | + | 690 | WP_257541810.1 | conjugal transfer protein TrbF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|