MGE detailed information
MGE type: Prophage MGE length: 42411 bp
Accession: NZ_CP084405 Location: 3534107..3576517 Organism: Sphingobium sp. CFD-2 Replicon: chromosome
Accession: NZ_CP084405 Location: 3534107..3576517 Organism: Sphingobium sp. CFD-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB29_RS17475 | 3530817..3531833 | + | 1017 | WP_257555040.1 | NADP-dependent oxidoreductase | - |
| LDB29_RS17480 | 3531902..3532765 | - | 864 | WP_025547899.1 | OmpA family protein | - |
| LDB29_RS17485 | 3534107..3534397 | + | 291 | WP_137710086.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LDB29_RS17490 | 3534430..3534717 | + | 288 | WP_137710087.1 | putative addiction module antidote protein | Antitoxin Detail |
| LDB29_RS17495 | 3534766..3535845 | - | 1080 | WP_257555044.1 | IS110 family transposase ISMno22 | Transposase |
| LDB29_RS17500 | 3536613..3537071 | + | 459 | WP_137710092.1 | DUF2059 domain-containing protein | - |
| LDB29_RS17505 | 3537195..3537584 | - | 390 | WP_048578749.1 | hypothetical protein | - |
| LDB29_RS17510 | 3537687..3537845 | - | 159 | WP_137710093.1 | SpoIIIAH-like family protein | - |
| LDB29_RS17515 | 3537936..3538979 | - | 1044 | WP_257555050.1 | phage portal protein | - |
| LDB29_RS17520 | 3538976..3540844 | - | 1869 | WP_257557053.1 | terminase family protein | - |
| LDB29_RS17525 | 3541009..3541854 | + | 846 | WP_137710096.1 | GPO family capsid scaffolding protein | - |
| LDB29_RS17530 | 3541909..3542961 | + | 1053 | WP_257555052.1 | phage major capsid protein, P2 family | - |
| LDB29_RS17535 | 3543004..3543861 | + | 858 | WP_257555055.1 | phage terminase small subunit | - |
| LDB29_RS17540 | 3543982..3544209 | + | 228 | WP_137710099.1 | hypothetical protein | - |
| LDB29_RS17545 | 3544206..3544688 | + | 483 | WP_137710100.1 | head completion/stabilization protein | - |
| LDB29_RS17550 | 3544688..3544918 | + | 231 | WP_257557055.1 | tail protein X | - |
| LDB29_RS17555 | 3544922..3545254 | + | 333 | WP_137710101.1 | hypothetical protein | - |
| LDB29_RS17560 | 3545260..3545742 | + | 483 | WP_140042720.1 | N-acetylmuramoyl-L-alanine amidase | - |
| LDB29_RS17565 | 3545747..3546226 | + | 480 | WP_257555059.1 | hypothetical protein | - |
| LDB29_RS17570 | 3546198..3546455 | + | 258 | WP_257555061.1 | hypothetical protein | - |
| LDB29_RS17575 | 3546455..3546970 | + | 516 | WP_257555062.1 | phage tail protein | - |
| LDB29_RS17580 | 3546967..3547638 | + | 672 | WP_257555063.1 | phage virion morphogenesis protein | - |
| LDB29_RS17585 | 3547662..3548177 | + | 516 | WP_257555064.1 | hypothetical protein | - |
| LDB29_RS17590 | 3548272..3548658 | - | 387 | WP_257555065.1 | DUF2070 family protein | - |
| LDB29_RS17595 | 3548682..3549575 | + | 894 | WP_257555066.1 | baseplate J/gp47 family protein | - |
| LDB29_RS17600 | 3549572..3550123 | + | 552 | WP_257555067.1 | phage tail protein I | - |
| LDB29_RS17605 | 3550135..3552528 | + | 2394 | WP_257555068.1 | hypothetical protein | - |
| LDB29_RS17610 | 3552539..3552922 | + | 384 | WP_257555071.1 | tail fiber assembly protein | - |
| LDB29_RS17615 | 3552934..3553200 | + | 267 | WP_257555072.1 | hypothetical protein | - |
| LDB29_RS17620 | 3553284..3553838 | + | 555 | WP_257555074.1 | phage baseplate assembly protein V | - |
| LDB29_RS17625 | 3553838..3554188 | + | 351 | WP_137710114.1 | GPW/gp25 family protein | - |
| LDB29_RS17630 | 3554203..3555378 | + | 1176 | WP_257555077.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| LDB29_RS17635 | 3555418..3555933 | + | 516 | WP_137710116.1 | phage major tail tube protein | - |
| LDB29_RS17640 | 3555996..3556304 | + | 309 | WP_140042706.1 | phage tail assembly protein | - |
| LDB29_RS17645 | 3556313..3556450 | + | 138 | WP_137710118.1 | GpE family phage tail protein | - |
| LDB29_RS17650 | 3556450..3558969 | + | 2520 | WP_257555081.1 | phage tail tape measure protein | - |
| LDB29_RS17655 | 3559001..3559384 | + | 384 | WP_257555082.1 | phage tail protein | - |
| LDB29_RS17660 | 3559381..3560391 | + | 1011 | WP_257555083.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| LDB29_RS17665 | 3560519..3561397 | - | 879 | WP_257555085.1 | DNA adenine methylase | - |
| LDB29_RS17670 | 3561470..3562804 | - | 1335 | WP_257555086.1 | hypothetical protein | - |
| LDB29_RS17675 | 3562846..3563505 | - | 660 | WP_257555087.1 | S24 family peptidase | - |
| LDB29_RS17680 | 3563591..3563986 | + | 396 | WP_257555088.1 | helix-turn-helix domain-containing protein | - |
| LDB29_RS17685 | 3563986..3564270 | + | 285 | WP_257555089.1 | hypothetical protein | - |
| LDB29_RS17690 | 3564267..3564464 | + | 198 | WP_257555091.1 | hypothetical protein | - |
| LDB29_RS17695 | 3564461..3564949 | + | 489 | WP_257555093.1 | hypothetical protein | - |
| LDB29_RS17700 | 3564949..3565290 | + | 342 | WP_171010060.1 | ogr/Delta-like zinc finger family protein | - |
| LDB29_RS17705 | 3565395..3568124 | + | 2730 | WP_257555095.1 | toprim domain-containing protein | - |
| LDB29_RS17710 | 3568142..3568585 | + | 444 | WP_257555097.1 | hypothetical protein | - |
| LDB29_RS17715 | 3568585..3568764 | + | 180 | WP_257555099.1 | hypothetical protein | - |
| LDB29_RS17720 | 3568776..3569018 | + | 243 | WP_257555101.1 | DUF2312 domain-containing protein | - |
| LDB29_RS17725 | 3569119..3569304 | + | 186 | WP_257555103.1 | AlpA family phage regulatory protein | - |
| LDB29_RS17730 | 3569307..3570653 | - | 1347 | WP_257555105.1 | Prophage integrase IntA ; Integrase | Integrase |
| LDB29_RS17740 | 3571128..3571940 | + | 813 | WP_044660476.1 | DUF1134 domain-containing protein | - |
| LDB29_RS17745 | 3572077..3573156 | - | 1080 | WP_044660475.1 | DNA polymerase IV | - |
| LDB29_RS17750 | 3573209..3573757 | - | 549 | WP_061934940.1 | hypothetical protein | - |
| LDB29_RS17755 | 3573754..3574278 | - | 525 | WP_044660473.1 | DUF177 domain-containing protein | - |
| LDB29_RS17760 | 3574275..3574790 | - | 516 | WP_044662835.1 | ubiquinol-cytochrome C chaperone family protein | - |
| LDB29_RS17765 | 3574880..3575449 | + | 570 | WP_037481813.1 | outer membrane protein assembly factor BamE | - |
| LDB29_RS17770 | 3575639..3576517 | - | 879 | WP_257555113.1 | NAD(P)-dependent oxidoreductase | - |
| LDB29_RS17775 | 3576514..3577497 | - | 984 | WP_257555115.1 | ATP-grasp domain-containing protein | - |
| LDB29_RS17780 | 3577494..3578210 | - | 717 | WP_025550772.1 | metallophosphoesterase family protein | - |
| LDB29_RS17785 | 3578201..3579334 | - | 1134 | WP_257555116.1 | glycosyltransferase family 4 protein | - |
| LDB29_RS17790 | 3579336..3580193 | - | 858 | WP_257555117.1 | sulfotransferase domain-containing protein | - |
| LDB29_RS17795 | 3580196..3581305 | - | 1110 | WP_025550776.1 | glycosyltransferase family 4 protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|