MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 166262 bp
Accession: NZ_CP084405 Location: 3045126..3211387 Organism: Sphingobium sp. CFD-2 Replicon: chromosome
Accession: NZ_CP084405 Location: 3045126..3211387 Organism: Sphingobium sp. CFD-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB29_RS15065 | 3040180..3040536 | - | 357 | WP_257554607.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| LDB29_RS15070 | 3040795..3041562 | - | 768 | WP_054944222.1 | IS21-like element helper ATPase IstB | - |
| LDB29_RS15075 | 3041559..3043055 | - | 1497 | WP_082430708.1 | IS21 family transposase | - |
| LDB29_RS15080 | 3043111..3043488 | - | 378 | WP_257554608.1 | transposase | - |
| LDB29_RS15085 | 3044109..3045761 | - | 1653 | WP_257554609.1 | DUF1698 domain-containing protein | - |
| LDB29_RS15090 | 3045851..3046993 | - | 1143 | WP_257554610.1 | hypothetical protein | VF |
| LDB29_RS15095 | 3046990..3048357 | - | 1368 | WP_257554611.1 | Alpha-maltose-1-phosphate synthase | VF |
| LDB29_RS15100 | 3048354..3049601 | - | 1248 | WP_257554612.1 | D-inositol 3-phosphate glycosyltransferase | VF |
| LDB29_RS15105 | 3049718..3050380 | + | 663 | WP_257554613.1 | Polysialic acid transport ATP-binding protein KpsT | VF |
| LDB29_RS15110 | 3051143..3051700 | + | 558 | WP_257554614.1 | hypothetical protein | - |
| LDB29_RS15115 | 3051892..3052347 | + | 456 | WP_257554616.1 | IS66 family transposase ISFpe1 | Transposase |
| LDB29_RS15120 | 3052344..3052700 | + | 357 | WP_257554618.1 | IS66 family transposase ISNisp6 | Transposase |
| LDB29_RS15125 | 3052732..3054114 | + | 1383 | Protein_2985 | IS66 family transposase ISFpe1 | Transposase |
| LDB29_RS15130 | 3054264..3054641 | + | 378 | WP_257554620.1 | hypothetical protein | - |
| LDB29_RS15135 | 3054738..3056234 | + | 1497 | WP_082430708.1 | IS21 family transposase ISSsp5 | Transposase |
| LDB29_RS15140 | 3056231..3056998 | + | 768 | WP_054944222.1 | IS21 family transposase ISSsp5 | Transposase |
| LDB29_RS15145 | 3057399..3058007 | - | 609 | WP_257554622.1 | hypothetical protein | - |
| LDB29_RS15150 | 3058336..3059085 | + | 750 | WP_257554624.1 | cell wall hydrolase | - |
| LDB29_RS15155 | 3059259..3059792 | - | 534 | WP_257554626.1 | GNAT family N-acetyltransferase | - |
| LDB29_RS15160 | 3059789..3060079 | - | 291 | WP_257554628.1 | DUF1778 domain-containing protein | - |
| LDB29_RS15165 | 3060245..3060490 | - | 246 | WP_257554630.1 | hypothetical protein | - |
| LDB29_RS15170 | 3060711..3061556 | - | 846 | WP_257554632.1 | hypothetical protein | VF |
| LDB29_RS15175 | 3061553..3063631 | - | 2079 | WP_257554634.1 | Type II secretion system protein D | VF |
| LDB29_RS15180 | 3064094..3064648 | - | 555 | WP_257554636.1 | type II secretion system protein GspM | - |
| LDB29_RS15185 | 3064645..3065670 | - | 1026 | WP_257554638.1 | PilN domain-containing protein | - |
| LDB29_RS15190 | 3065667..3066362 | - | 696 | WP_257554639.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| LDB29_RS15195 | 3066366..3066740 | - | 375 | WP_257554641.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| LDB29_RS15200 | 3066737..3067174 | - | 438 | WP_257554643.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| LDB29_RS15205 | 3067158..3067592 | - | 435 | WP_257554645.1 | Type II secretion system protein G | VF |
| LDB29_RS15210 | 3067607..3068818 | - | 1212 | WP_257554646.1 | Type II secretion system protein F | VF |
| LDB29_RS15215 | 3068815..3070461 | - | 1647 | WP_257554647.1 | Type II secretion system protein E | VF |
| LDB29_RS15220 | 3071100..3072995 | + | 1896 | WP_257554648.1 | substrate-binding domain-containing protein | - |
| LDB29_RS15225 | 3073163..3075046 | + | 1884 | WP_257554649.1 | substrate-binding domain-containing protein | - |
| LDB29_RS15230 | 3075654..3077084 | - | 1431 | WP_257554650.1 | Hint domain-containing protein | - |
| LDB29_RS15235 | 3077146..3090183 | - | 13038 | WP_257554651.1 | hypothetical protein | VF |
| LDB29_RS15240 | 3090361..3092172 | - | 1812 | WP_257554652.1 | putative porin | - |
| LDB29_RS15245 | 3092207..3092938 | - | 732 | WP_257554653.1 | hypothetical protein | VF |
| LDB29_RS15250 | 3093100..3093519 | - | 420 | WP_257554657.1 | biopolymer transporter ExbD | - |
| LDB29_RS15255 | 3093544..3095295 | - | 1752 | WP_257554659.1 | DUF2341 domain-containing protein | - |
| LDB29_RS15260 | 3095648..3097219 | - | 1572 | WP_257554661.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| LDB29_RS15265 | 3097404..3098219 | - | 816 | WP_257554662.1 | LuxR C-terminal-related transcriptional regulator | - |
| LDB29_RS15270 | 3098534..3099364 | + | 831 | WP_257554664.1 | Ferripyoverdine receptor | VF |
| LDB29_RS15275 | 3099468..3099779 | - | 312 | WP_257554665.1 | HU family DNA-binding protein | - |
| LDB29_RS15280 | 3099906..3100610 | - | 705 | WP_257554666.1 | helix-turn-helix transcriptional regulator | - |
| LDB29_RS15285 | 3100623..3100823 | - | 201 | WP_257554667.1 | hypothetical protein | - |
| LDB29_RS15290 | 3100935..3101675 | + | 741 | WP_257554668.1 | energy transducer TonB | - |
| LDB29_RS15295 | 3101728..3102279 | + | 552 | WP_257554669.1 | sigma-70 family RNA polymerase sigma factor | - |
| LDB29_RS15300 | 3102342..3103337 | + | 996 | WP_257554670.1 | FecR domain-containing protein | - |
| LDB29_RS15305 | 3103455..3104264 | + | 810 | WP_257554671.1 | hypothetical protein | VF |
| LDB29_RS15310 | 3104305..3104637 | - | 333 | WP_257554672.1 | endoribonuclease MazF | Toxin Detail |
| LDB29_RS15315 | 3104637..3104879 | - | 243 | WP_257554674.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| LDB29_RS15320 | 3105054..3105887 | - | 834 | WP_257554676.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | VF |
| LDB29_RS15325 | 3105888..3106376 | - | 489 | WP_257554678.1 | Arabinose 5-phosphate isomerase KdsD | VF |
| LDB29_RS15330 | 3106518..3108014 | + | 1497 | WP_082430708.1 | IS21 family transposase ISSsp5 | Transposase |
| LDB29_RS15335 | 3108011..3108778 | + | 768 | WP_054944222.1 | IS21 family transposase ISSsp5 | Transposase |
| LDB29_RS15340 | 3108850..3109386 | - | 537 | WP_257554680.1 | Arabinose 5-phosphate isomerase KdsD | VF |
| LDB29_RS15345 | 3109547..3109921 | - | 375 | WP_257554681.1 | winged helix DNA-binding protein | - |
| LDB29_RS15350 | 3110475..3111239 | + | 765 | WP_257554683.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| LDB29_RS15355 | 3111406..3112965 | + | 1560 | WP_257554685.1 | FAD/NAD(P)-binding protein | - |
| LDB29_RS15360 | 3112952..3113797 | + | 846 | WP_257554686.1 | hypothetical protein | - |
| LDB29_RS15365 | 3113955..3114515 | + | 561 | WP_257554688.1 | hypothetical protein | - |
| LDB29_RS15370 | 3114634..3115434 | - | 801 | WP_257554690.1 | alpha/beta hydrolase | - |
| LDB29_RS15375 | 3115449..3117332 | - | 1884 | WP_257554692.1 | SGNH/GDSL hydrolase family protein | - |
| LDB29_RS15380 | 3117379..3118686 | + | 1308 | WP_257554693.1 | HTH-type transcriptional regulator YesS | VF |
| LDB29_RS15385 | 3118931..3120157 | + | 1227 | WP_257554694.1 | DUF3440 domain-containing protein | - |
| LDB29_RS15390 | 3120154..3120618 | + | 465 | WP_257554696.1 | hypothetical protein | - |
| LDB29_RS15395 | 3120584..3121216 | + | 633 | WP_257554698.1 | ParB/RepB/Spo0J family partition protein | - |
| LDB29_RS15400 | 3121271..3121729 | - | 459 | WP_257557045.1 | hypothetical protein | VF |
| LDB29_RS15405 | 3121825..3122415 | - | 591 | WP_257554699.1 | restriction endonuclease | - |
| LDB29_RS15410 | 3122425..3125412 | - | 2988 | WP_257554701.1 | MobF family relaxase | - |
| LDB29_RS15415 | 3125409..3127547 | - | 2139 | WP_257554703.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LDB29_RS15420 | 3127654..3127953 | - | 300 | WP_257554704.1 | CopG family transcriptional regulator | - |
| LDB29_RS15425 | 3128422..3128745 | + | 324 | WP_257554705.1 | hypothetical protein | - |
| LDB29_RS15430 | 3128919..3129956 | - | 1038 | WP_257554707.1 | DUF2493 domain-containing protein | - |
| LDB29_RS15435 | 3130040..3130510 | - | 471 | WP_257554709.1 | DUF736 domain-containing protein | - |
| LDB29_RS15440 | 3131550..3131945 | + | 396 | WP_257554711.1 | hypothetical protein | - |
| LDB29_RS15445 | 3132251..3132400 | + | 150 | WP_257554712.1 | hypothetical protein | - |
| LDB29_RS15450 | 3132940..3133797 | + | 858 | WP_257554714.1 | RES family NAD+ phosphorylase | - |
| LDB29_RS15455 | 3133794..3134675 | + | 882 | WP_257554716.1 | hypothetical protein | - |
| LDB29_RS15460 | 3134668..3135420 | + | 753 | WP_257554718.1 | GNAT family N-acetyltransferase | - |
| LDB29_RS15465 | 3135432..3135881 | + | 450 | WP_257554720.1 | hypothetical protein | - |
| LDB29_RS15470 | 3136060..3136395 | - | 336 | WP_257554721.1 | hypothetical protein | - |
| LDB29_RS15475 | 3136754..3137317 | - | 564 | WP_257554722.1 | hypothetical protein | - |
| LDB29_RS15480 | 3137302..3137490 | - | 189 | WP_257554724.1 | hypothetical protein | - |
| LDB29_RS15485 | 3137490..3138269 | - | 780 | WP_257554726.1 | hypothetical protein | - |
| LDB29_RS15490 | 3138323..3140020 | - | 1698 | WP_257554727.1 | ATP-binding protein | - |
| LDB29_RS15495 | 3140173..3140613 | - | 441 | WP_257554729.1 | hypothetical protein | - |
| LDB29_RS15500 | 3140616..3141134 | - | 519 | WP_257554731.1 | hypothetical protein | - |
| LDB29_RS15505 | 3141131..3142615 | - | 1485 | WP_257554733.1 | DUF3560 domain-containing protein | - |
| LDB29_RS15510 | 3142747..3142941 | - | 195 | WP_257554735.1 | hypothetical protein | - |
| LDB29_RS15515 | 3143156..3143635 | - | 480 | WP_257554737.1 | hypothetical protein | - |
| LDB29_RS15520 | 3143641..3144396 | - | 756 | WP_257554738.1 | hypothetical protein | - |
| LDB29_RS15525 | 3144440..3144901 | - | 462 | WP_257554740.1 | hypothetical protein | - |
| LDB29_RS15530 | 3144913..3145560 | - | 648 | WP_257554741.1 | hypothetical protein | - |
| LDB29_RS15535 | 3145755..3146171 | - | 417 | WP_257554742.1 | hypothetical protein | - |
| LDB29_RS15540 | 3146347..3146691 | - | 345 | WP_257554743.1 | DUF2958 domain-containing protein | - |
| LDB29_RS15545 | 3146829..3147416 | - | 588 | WP_257554744.1 | RES family NAD+ phosphorylase | - |
| LDB29_RS15550 | 3147419..3147913 | - | 495 | WP_257554745.1 | hypothetical protein | - |
| LDB29_RS15555 | 3148109..3148522 | - | 414 | WP_257554747.1 | hypothetical protein | - |
| LDB29_RS15560 | 3148585..3148803 | - | 219 | WP_257554748.1 | hypothetical protein | - |
| LDB29_RS15565 | 3148880..3150073 | - | 1194 | WP_257554750.1 | DUF932 domain-containing protein | - |
| LDB29_RS15570 | 3150324..3150824 | + | 501 | WP_257554751.1 | MucR family transcriptional regulator | - |
| LDB29_RS15575 | 3150948..3152084 | - | 1137 | WP_257554752.1 | hypothetical protein | - |
| LDB29_RS15580 | 3152251..3153513 | + | 1263 | WP_119750086.1 | IS21 family transposase ISMex13 | Transposase |
| LDB29_RS15585 | 3153510..3154370 | + | 861 | WP_119750084.1 | IS21 family transposase ISMex13 | Transposase |
| LDB29_RS15590 | 3154407..3158444 | - | 4038 | WP_257554757.1 | lactate dehydrogenase | - |
| LDB29_RS15595 | 3158622..3158948 | - | 327 | WP_257554759.1 | hypothetical protein | - |
| LDB29_RS15600 | 3159059..3160261 | - | 1203 | WP_257554761.1 | hypothetical protein | - |
| LDB29_RS15605 | 3160322..3160801 | - | 480 | WP_257554763.1 | hypothetical protein | - |
| LDB29_RS15610 | 3160865..3161137 | - | 273 | WP_257554765.1 | hypothetical protein | - |
| LDB29_RS15615 | 3161134..3161409 | - | 276 | WP_257554767.1 | hypothetical protein | - |
| LDB29_RS15620 | 3161406..3162194 | - | 789 | WP_257554769.1 | PRTRC system ThiF family protein | - |
| LDB29_RS15625 | 3162184..3162846 | - | 663 | WP_257554771.1 | PRTRC system protein A | - |
| LDB29_RS15630 | 3162843..3163661 | - | 819 | WP_257554773.1 | PRTRC system protein B | - |
| LDB29_RS15635 | 3163670..3164575 | - | 906 | WP_257554775.1 | hypothetical protein | - |
| LDB29_RS15640 | 3164616..3164837 | - | 222 | WP_257554778.1 | hypothetical protein | - |
| LDB29_RS15645 | 3164841..3165047 | - | 207 | WP_257554779.1 | PRTRC system protein C | - |
| LDB29_RS15650 | 3165095..3165529 | - | 435 | WP_257554780.1 | PRTRC system protein E | - |
| LDB29_RS15655 | 3165567..3167201 | - | 1635 | WP_257554781.1 | PRTRC system ParB family protein | - |
| LDB29_RS15660 | 3167242..3168168 | - | 927 | WP_257554782.1 | toprim domain-containing protein | - |
| LDB29_RS15665 | 3169247..3170359 | + | 1113 | WP_257554783.1 | endonuclease/exonuclease/phosphatase family protein | - |
| LDB29_RS15670 | 3170371..3170988 | + | 618 | WP_257554784.1 | NAD(P)H-dependent oxidoreductase | - |
| LDB29_RS15675 | 3171112..3171480 | + | 369 | WP_257554785.1 | hypothetical protein | - |
| LDB29_RS15680 | 3171533..3172972 | - | 1440 | WP_257554786.1 | hypothetical protein | - |
| LDB29_RS15685 | 3173097..3174317 | - | 1221 | WP_257554787.1 | hypothetical protein | - |
| LDB29_RS15690 | 3174314..3175438 | - | 1125 | WP_257554788.1 | hypothetical protein | - |
| LDB29_RS15695 | 3175466..3176305 | - | 840 | WP_257554789.1 | hypothetical protein | - |
| LDB29_RS15700 | 3176564..3176959 | + | 396 | WP_257554790.1 | hypothetical protein | - |
| LDB29_RS15705 | 3176956..3178185 | + | 1230 | WP_257554791.1 | hypothetical protein | - |
| LDB29_RS15710 | 3178594..3179133 | + | 540 | WP_044661282.1 | glycosyl hydrolase 108 family protein | - |
| LDB29_RS15715 | 3179143..3179412 | + | 270 | WP_044661281.1 | 3TM-type holin | - |
| LDB29_RS15720 | 3179581..3180462 | - | 882 | WP_025552267.1 | HTH-type transcriptional regulator DmlR | VF |
| LDB29_RS15725 | 3180563..3182074 | + | 1512 | WP_099186382.1 | acetyl-CoA hydrolase/transferase family protein | - |
| LDB29_RS15730 | 3182737..3183276 | - | 540 | WP_137709593.1 | hypothetical protein | - |
| LDB29_RS15735 | 3183594..3183962 | + | 369 | WP_025552414.1 | 30S ribosomal protein S13 | - |
| LDB29_RS15740 | 3184063..3184452 | + | 390 | WP_004208752.1 | 30S ribosomal protein S11 | - |
| LDB29_RS15745 | 3184575..3185639 | + | 1065 | WP_044661278.1 | DNA-directed RNA polymerase subunit alpha | - |
| LDB29_RS15750 | 3185824..3186249 | + | 426 | WP_044661277.1 | 50S ribosomal protein L17 | - |
| LDB29_RS15755 | 3186482..3188647 | + | 2166 | WP_099186384.1 | prolyl oligopeptidase family serine peptidase | - |
| LDB29_RS15760 | 3188783..3189325 | + | 543 | WP_099186385.1 | hypothetical protein | - |
| LDB29_RS15765 | 3189417..3189830 | + | 414 | WP_244968624.1 | DUF1449 family protein | - |
| LDB29_RS15770 | 3189817..3190464 | + | 648 | WP_099186386.1 | YoaK family protein | - |
| LDB29_RS15775 | 3190610..3191863 | + | 1254 | WP_099186387.1 | TCR/Tet family MFS transporter | - |
| LDB29_RS15780 | 3191906..3193465 | + | 1560 | WP_044661270.1 | glutamine-hydrolyzing GMP synthase | - |
| LDB29_RS15785 | 3193690..3193950 | - | 261 | WP_099186388.1 | DUF6356 family protein | - |
| LDB29_RS15790 | 3194054..3195241 | + | 1188 | WP_099186389.1 | aminotransferase | - |
| LDB29_RS15795 | 3195328..3196761 | + | 1434 | WP_099186390.1 | DNA recombination protein RmuC | - |
| LDB29_RS15800 | 3196951..3197583 | + | 633 | WP_255309038.1 | nicotinate-nucleotide adenylyltransferase | - |
| LDB29_RS15805 | 3197596..3197985 | + | 390 | WP_044661265.1 | ribosome silencing factor | - |
| LDB29_RS15810 | 3198035..3198976 | - | 942 | WP_193666736.1 | IS110 family transposase ISHne5 | Transposase |
| LDB29_RS15815 | 3199307..3199729 | + | 423 | WP_025549938.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| LDB29_RS15820 | 3199884..3201119 | + | 1236 | WP_044661264.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| LDB29_RS15825 | 3201264..3202196 | - | 933 | WP_173676460.1 | zinc metalloprotease HtpX | - |
| LDB29_RS15830 | 3202301..3202474 | + | 174 | WP_064485884.1 | DUF1674 domain-containing protein | - |
| LDB29_RS15835 | 3202673..3203101 | + | 429 | WP_025549941.1 | hypothetical protein | - |
| LDB29_RS15840 | 3203189..3204088 | + | 900 | WP_025549942.1 | UTP--glucose-1-phosphate uridylyltransferase | VF |
| LDB29_RS15845 | 3204412..3204990 | + | 579 | WP_048577407.1 | TMEM165/GDT1 family protein | - |
| LDB29_RS15850 | 3205094..3206032 | + | 939 | WP_099186393.1 | complex I NDUFA9 subunit family protein | - |
| LDB29_RS15855 | 3206190..3206999 | + | 810 | WP_061939563.1 | undecaprenyl-diphosphate phosphatase | - |
| LDB29_RS15860 | 3207165..3208616 | + | 1452 | WP_025549946.1 | NAD(P)-dependent oxidoreductase | - |
| LDB29_RS15865 | 3208616..3209326 | + | 711 | WP_025549947.1 | DUF2059 domain-containing protein | - |
| LDB29_RS15870 | 3209413..3213951 | + | 4539 | WP_025549948.1 | glutamate synthase large subunit | - |
| LDB29_RS15875 | 3213961..3214437 | - | 477 | WP_025549949.1 | hypothetical protein | - |
| LDB29_RS15885 | 3214979..3215764 | + | 786 | WP_025549950.1 | LPS export ABC transporter ATP-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|