MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 160984 bp
Accession: NZ_CP084399 Location: 1..160984 Organism: Sphingobium sp. CFD-1 Replicon: plasmid pCFD-1-1
Accession: NZ_CP084399 Location: 1..160984 Organism: Sphingobium sp. CFD-1 Replicon: plasmid pCFD-1-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB26_RS19290 | 55..351 | + | 297 | WP_257542283.1 | hypothetical protein | - |
| LDB26_RS19295 | 357..1235 | + | 879 | WP_257542285.1 | zeta toxin family protein | - |
| LDB26_RS19300 | 1333..1698 | + | 366 | WP_257542287.1 | WGR domain-containing protein | - |
| LDB26_RS19305 | 2043..2375 | + | 333 | WP_257542289.1 | single-stranded DNA-binding protein | - |
| LDB26_RS19310 | 3257..4195 | + | 939 | WP_257542291.1 | zincin-like metallopeptidase domain-containing protein | - |
| LDB26_RS19315 | 4255..4557 | + | 303 | WP_257542293.1 | hypothetical protein | - |
| LDB26_RS19320 | 4554..4820 | + | 267 | WP_257542295.1 | hypothetical protein | - |
| LDB26_RS19325 | 4817..5416 | + | 600 | WP_257542297.1 | hypothetical protein | - |
| LDB26_RS19330 | 5413..5835 | + | 423 | WP_257542300.1 | hypothetical protein | - |
| LDB26_RS19335 | 6184..6450 | + | 267 | WP_257542302.1 | hypothetical protein | - |
| LDB26_RS19340 | 6453..6689 | + | 237 | WP_257542304.1 | hypothetical protein | - |
| LDB26_RS19345 | 6712..6918 | + | 207 | WP_257542306.1 | hypothetical protein | - |
| LDB26_RS19350 | 6915..7187 | + | 273 | WP_257542308.1 | hypothetical protein | - |
| LDB26_RS19355 | 7184..7975 | + | 792 | WP_257542310.1 | hypothetical protein | - |
| LDB26_RS19360 | 8048..8371 | + | 324 | WP_257542313.1 | hypothetical protein | - |
| LDB26_RS19365 | 8495..8794 | - | 300 | WP_257542315.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LDB26_RS19370 | 8791..9051 | - | 261 | WP_257542317.1 | CopG family ribbon-helix-helix protein | - |
| LDB26_RS19375 | 9340..9678 | - | 339 | WP_257542319.1 | hypothetical protein | - |
| LDB26_RS19380 | 10155..10547 | + | 393 | WP_257542321.1 | DUF3768 domain-containing protein | - |
| LDB26_RS19385 | 10611..12053 | + | 1443 | WP_257542323.1 | DUF4942 domain-containing protein | - |
| LDB26_RS19390 | 12249..12437 | + | 189 | WP_257542325.1 | hypothetical protein | - |
| LDB26_RS19395 | 12625..12924 | - | 300 | WP_257542327.1 | DUF721 domain-containing protein | - |
| LDB26_RS19400 | 13185..13433 | + | 249 | WP_257542329.1 | hypothetical protein | - |
| LDB26_RS19405 | 13433..13603 | + | 171 | WP_257542331.1 | hypothetical protein | - |
| LDB26_RS19410 | 13632..14396 | + | 765 | WP_257542333.1 | ParA family protein | - |
| LDB26_RS19415 | 14396..15361 | + | 966 | WP_257542335.1 | ParB/RepB/Spo0J family partition protein | - |
| LDB26_RS19420 | 15574..16113 | + | 540 | WP_257542337.1 | mobilization protein | - |
| LDB26_RS19425 | 16100..17227 | + | 1128 | WP_257542339.1 | T-DNA border endonuclease VirD2 | Relaxase |
| LDB26_RS19430 | 17288..17686 | - | 399 | WP_257542341.1 | hypothetical protein | - |
| LDB26_RS19435 | 17780..18115 | - | 336 | WP_257542343.1 | hypothetical protein | - |
| LDB26_RS19440 | 18448..19788 | - | 1341 | WP_257542345.1 | sensor histidine kinase N-terminal domain-containing protein | - |
| LDB26_RS19445 | 19785..20444 | - | 660 | WP_257542347.1 | Transcriptional regulatory protein BasR | VF |
| LDB26_RS19450 | 20523..21338 | + | 816 | WP_257542349.1 | TlpA disulfide reductase family protein | - |
| LDB26_RS19455 | 21335..22036 | + | 702 | WP_257542351.1 | DsbA family protein | - |
| LDB26_RS19460 | 22060..23478 | - | 1419 | WP_257542353.1 | Outer membrane protein OprM | VF |
| LDB26_RS19465 | 23465..24628 | - | 1164 | WP_257542355.1 | efflux RND transporter periplasmic adaptor subunit | - |
| LDB26_RS19470 | 24621..27803 | - | 3183 | WP_257542357.1 | efflux RND transporter permease subunit | - |
| LDB26_RS19475 | 27958..28440 | - | 483 | WP_257542359.1 | hypothetical protein | VF |
| LDB26_RS19480 | 28567..29334 | + | 768 | WP_257542361.1 | Levodione reductase | VF |
| LDB26_RS19485 | 29439..30545 | - | 1107 | WP_257542363.1 | FAD-dependent oxidoreductase | - |
| LDB26_RS19490 | 30617..30961 | - | 345 | WP_257542430.1 | carboxymuconolactone decarboxylase family protein | - |
| LDB26_RS19495 | 31009..31692 | - | 684 | WP_257542365.1 | cupin domain-containing protein | - |
| LDB26_RS19500 | 31696..32439 | - | 744 | WP_257542367.1 | 3-alpha-hydroxycholanate dehydrogenase (NADP(+)) | VF |
| LDB26_RS19505 | 32564..33487 | + | 924 | WP_257542432.1 | LysR substrate-binding domain-containing protein | - |
| LDB26_RS19510 | 33535..34053 | - | 519 | WP_257542370.1 | carboxymuconolactone decarboxylase family protein | - |
| LDB26_RS19515 | 34077..34571 | - | 495 | WP_257542372.1 | DUF2938 domain-containing protein | - |
| LDB26_RS19520 | 34568..35809 | - | 1242 | WP_257542374.1 | MFS transporter | - |
| LDB26_RS19525 | 35812..37131 | - | 1320 | WP_257542376.1 | tetratricopeptide repeat protein | - |
| LDB26_RS19530 | 37267..38052 | + | 786 | WP_257542434.1 | helix-turn-helix transcriptional regulator | - |
| LDB26_RS19535 | 38302..39279 | - | 978 | WP_257542378.1 | SLAC1 anion channel family protein | - |
| LDB26_RS19540 | 39400..39594 | - | 195 | WP_257542381.1 | heavy-metal-associated domain-containing protein | - |
| LDB26_RS19545 | 39752..42256 | + | 2505 | WP_257542383.1 | Copper-transporting P-type ATPase | VF |
| LDB26_RS19550 | 42253..42705 | + | 453 | WP_257542385.1 | Cu(I)-responsive transcriptional regulator | - |
| LDB26_RS19555 | 42715..43896 | - | 1182 | WP_257542387.1 | alpha/beta fold hydrolase | - |
| LDB26_RS19560 | 43912..46095 | - | 2184 | WP_257542389.1 | protein-disulfide reductase DsbD family protein | - |
| LDB26_RS19565 | 46260..48536 | - | 2277 | WP_257542391.1 | putative TonB-dependent receptor | VF |
| LDB26_RS19570 | 48734..49306 | - | 573 | WP_257542393.1 | DsrE family protein | - |
| LDB26_RS19575 | 49358..49492 | - | 135 | WP_257542395.1 | DUF2474 domain-containing protein | - |
| LDB26_RS19580 | 49473..50486 | - | 1014 | WP_257542397.1 | cytochrome d ubiquinol oxidase subunit II | - |
| LDB26_RS19585 | 50483..51889 | - | 1407 | WP_257542399.1 | cytochrome ubiquinol oxidase subunit I | - |
| LDB26_RS19590 | 51953..52744 | - | 792 | WP_257542401.1 | sulfite exporter TauE/SafE family protein | - |
| LDB26_RS19595 | 52741..54321 | - | 1581 | WP_257542404.1 | bifunctional protein tyrosine phosphatase family protein/NAD(P)/FAD-dependent oxidoreductase | - |
| LDB26_RS19600 | 54341..54754 | - | 414 | WP_257542406.1 | YeeE/YedE family protein | - |
| LDB26_RS19605 | 54756..55190 | - | 435 | WP_257542408.1 | YeeE/YedE thiosulfate transporter family protein | - |
| LDB26_RS19610 | 55187..56101 | - | 915 | WP_257542410.1 | MBL fold metallo-hydrolase | - |
| LDB26_RS19615 | 56190..56804 | + | 615 | WP_257542412.1 | peroxiredoxin | - |
| LDB26_RS19620 | 56801..57190 | + | 390 | WP_257542414.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LDB26_RS19625 | 57228..58814 | - | 1587 | WP_257542417.1 | apolipoprotein N-acyltransferase | - |
| LDB26_RS19630 | 58994..59629 | + | 636 | WP_257542419.1 | DsbA family protein | - |
| LDB26_RS19635 | 59719..60753 | + | 1035 | WP_257542421.1 | site-specific integrase | - |
| LDB26_RS19640 | 60806..61159 | - | 354 | WP_257542423.1 | hypothetical protein | - |
| LDB26_RS19645 | 61187..62593 | - | 1407 | WP_257542425.1 | hypothetical protein | - |
| LDB26_RS19650 | 62607..64016 | - | 1410 | WP_257542427.1 | Protein VirD4 | VF |
| LDB26_RS19655 | 64023..64991 | - | 969 | WP_225870698.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| LDB26_RS19660 | 65032..65532 | - | 501 | Protein_74 | Tn3 family transposase TnpA_ISYps3 | Transposase |
| LDB26_RS19665 | 65593..66357 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| LDB26_RS19670 | 66414..67535 | + | 1122 | Protein_76 | MFS transporter | - |
| LDB26_RS19675 | 67546..68112 | + | 567 | WP_008786762.1 | TetR/AcrR family transcriptional regulator | - |
| LDB26_RS19680 | 68255..70708 | + | 2454 | WP_257542281.1 | Tn3 family transposase TnpA_ISYps3 | Transposase |
| LDB26_RS19685 | 70727..71491 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| LDB26_RS19690 | 71618..72055 | + | 438 | WP_007683347.1 | DUF411 domain-containing protein | - |
| LDB26_RS19695 | 72440..72703 | + | 264 | WP_004212689.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LDB26_RS19700 | 72690..72971 | + | 282 | WP_004212690.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| LDB26_RS19705 | 73319..73687 | + | 369 | WP_239659617.1 | CorA family divalent cation transporter | - |
| LDB26_RS19710 | 73750..74157 | - | 408 | WP_007683354.1 | Response regulator protein TodT | VF |
| LDB26_RS19715 | 74239..74862 | - | 624 | WP_007683357.1 | Transcriptional regulatory protein FixJ | VF |
| LDB26_RS19720 | 74852..76387 | - | 1536 | WP_007683359.1 | PAS domain S-box protein | - |
| LDB26_RS19725 | 76446..76919 | - | 474 | WP_007683361.1 | DUF305 domain-containing protein | - |
| LDB26_RS19730 | 77010..78158 | - | 1149 | WP_007683363.1 | copper resistance protein B | - |
| LDB26_RS19735 | 78158..80083 | - | 1926 | WP_007683365.1 | copper resistance system multicopper oxidase | - |
| LDB26_RS19740 | 80150..80716 | - | 567 | WP_007683367.1 | RNA polymerase sigma factor | - |
| LDB26_RS19745 | 80713..81153 | - | 441 | WP_007683368.1 | periplasmic heavy metal sensor | - |
| LDB26_RS19750 | 81153..81425 | - | 273 | WP_007683370.1 | hypothetical protein | - |
| LDB26_RS19755 | 81559..81936 | + | 378 | WP_007683372.1 | copper homeostasis periplasmic binding protein CopC | - |
| LDB26_RS19760 | 81941..82885 | + | 945 | WP_007683373.1 | copper homeostasis membrane protein CopD | - |
| LDB26_RS19765 | 83280..85637 | + | 2358 | WP_007683374.1 | heavy metal translocating P-type ATPase | - |
| LDB26_RS19770 | 85634..86032 | + | 399 | WP_004212744.1 | Cu(I)-responsive transcriptional regulator | - |
| LDB26_RS19775 | 86059..86694 | - | 636 | WP_007683376.1 | Transcriptional regulatory protein FixJ | VF |
| LDB26_RS19780 | 86947..87134 | - | 188 | Protein_98 | hypothetical protein | - |
| LDB26_RS19785 | 87257..88165 | - | 909 | WP_009823969.1 | ribose-phosphate pyrophosphokinase | - |
| LDB26_RS19790 | 88162..89700 | - | 1539 | WP_007683378.1 | thymidine phosphorylase family protein | - |
| LDB26_RS19795 | 89697..91145 | - | 1449 | WP_013849921.1 | MBL fold/beta-CASP domain-containing RNA metallo-hydrolase | - |
| LDB26_RS19800 | 91398..91661 | + | 264 | WP_007683380.1 | DUF2933 domain-containing protein | - |
| LDB26_RS19805 | 91658..92512 | + | 855 | WP_007683381.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| LDB26_RS19810 | 92447..93016 | - | 570 | WP_013039076.1 | hypothetical protein | - |
| LDB26_RS19815 | 93238..93999 | + | 762 | WP_007683383.1 | LuxR family transcriptional regulator | - |
| LDB26_RS19820 | 94115..94288 | + | 174 | Protein_106 | autoinducer binding domain-containing protein | - |
| LDB26_RS19825 | 94350..94889 | + | 540 | Protein_107 | ATP-dependent helicase | - |
| LDB26_RS19830 | 95014..95172 | + | 159 | WP_007683426.1 | hypothetical protein | - |
| LDB26_RS19835 | 95221..95424 | - | 204 | WP_007683427.1 | hypothetical protein | - |
| LDB26_RS19840 | 95688..96086 | - | 399 | WP_009823951.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| LDB26_RS19845 | 96083..96736 | - | 654 | WP_009823950.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| LDB26_RS19850 | 96729..97337 | - | 609 | WP_007688042.1 | DUF6088 family protein | - |
| LDB26_RS19855 | 97506..98627 | - | 1122 | WP_007688043.1 | T-DNA border endonuclease VirD2 | Relaxase |
| LDB26_RS19860 | 98620..99156 | - | 537 | WP_031295761.1 | hypothetical protein | Relaxase |
| LDB26_RS19865 | 99387..100334 | - | 948 | WP_007688045.1 | ParB/RepB/Spo0J family partition protein | - |
| LDB26_RS19870 | 100334..101098 | - | 765 | WP_007688046.1 | ParA family protein | - |
| LDB26_RS19875 | 101111..101287 | - | 177 | WP_013039042.1 | hypothetical protein | - |
| LDB26_RS19880 | 101479..101871 | - | 393 | WP_007688057.1 | DUF3768 domain-containing protein | - |
| LDB26_RS19885 | 102131..102481 | + | 351 | WP_066564291.1 | hypothetical protein | - |
| LDB26_RS19890 | 102620..103141 | - | 522 | WP_031295760.1 | hypothetical protein | - |
| LDB26_RS19895 | 103249..103413 | - | 165 | WP_007688065.1 | hypothetical protein | - |
| LDB26_RS19900 | 103719..104153 | + | 435 | WP_007688066.1 | hypothetical protein | - |
| LDB26_RS19905 | 104229..104636 | - | 408 | WP_007688067.1 | single-stranded DNA-binding protein | - |
| LDB26_RS19910 | 105044..105712 | - | 669 | WP_007688068.1 | hypothetical protein | - |
| LDB26_RS19915 | 105825..106766 | - | 942 | WP_007688069.1 | DUF2493 domain-containing protein | - |
| LDB26_RS19920 | 107114..107797 | - | 684 | WP_223810982.1 | arsenical resistance protein ArsH | - |
| LDB26_RS19925 | 107854..108285 | - | 432 | WP_007688071.1 | arsenic resistance N-acetyltransferase ArsN2 | - |
| LDB26_RS19930 | 108282..109349 | - | 1068 | WP_007688072.1 | ACR3 family arsenite efflux transporter | - |
| LDB26_RS19935 | 109346..109786 | - | 441 | WP_007688073.1 | arsenate reductase (glutaredoxin) | - |
| LDB26_RS19940 | 109783..110319 | - | 537 | WP_007688074.1 | arsenate reductase ArsC | - |
| LDB26_RS19945 | 110332..110670 | - | 339 | WP_013849891.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LDB26_RS19950 | 110723..110884 | - | 162 | Protein_132 | zincin-like metallopeptidase domain-containing protein | - |
| LDB26_RS19955 | 111054..113030 | - | 1977 | WP_009823943.1 | strawberry notch C-terminal domain-containing protein | - |
| LDB26_RS19960 | 113214..114218 | - | 1005 | WP_009823939.1 | Tyrosine recombinase XerC | VF |
| LDB26_RS19965 | 114215..115570 | - | 1356 | WP_009823940.1 | tyrosine-type recombinase/integrase | - |
| LDB26_RS19970 | 115567..116799 | - | 1233 | WP_007015824.1 | site-specific integrase | - |
| LDB26_RS19975 | 116890..119085 | - | 2196 | WP_257542273.1 | strawberry notch family protein | - |
| LDB26_RS19980 | 119152..120018 | - | 867 | WP_007688081.1 | toprim domain-containing protein | - |
| LDB26_RS19985 | 120080..120406 | - | 327 | WP_007688082.1 | single-stranded DNA-binding protein | - |
| LDB26_RS19990 | 120486..120686 | + | 201 | WP_013041755.1 | hypothetical protein | - |
| LDB26_RS19995 | 121073..122161 | + | 1089 | WP_007688083.1 | replication initiation protein | - |
| LDB26_RS20000 | 122357..123559 | + | 1203 | WP_007688084.1 | Chromosome-partitioning ATPase Soj | VF |
| LDB26_RS20005 | 123607..124620 | + | 1014 | WP_013849890.1 | ParB/RepB/Spo0J family partition protein | - |
| LDB26_RS20010 | 124685..125035 | + | 351 | WP_007688086.1 | hypothetical protein | - |
| LDB26_RS20015 | 125080..125763 | - | 684 | WP_013041559.1 | RES family NAD+ phosphorylase | - |
| LDB26_RS20020 | 125763..126161 | - | 399 | WP_007686501.1 | DUF2384 domain-containing protein | - |
| LDB26_RS20025 | 126258..127424 | - | 1167 | WP_007686500.1 | hypothetical protein | - |
| LDB26_RS20030 | 127571..128809 | + | 1239 | WP_013039113.1 | integrase | - |
| LDB26_RS20035 | 129124..130002 | - | 879 | WP_009824028.1 | AAA family ATPase | - |
| LDB26_RS20040 | 129929..131329 | - | 1401 | WP_257542275.1 | IS481 family transposase ISGur11 | Transposase |
| LDB26_RS20045 | 131521..132093 | + | 573 | WP_009824027.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| LDB26_RS20050 | 132383..133585 | + | 1203 | WP_013039112.1 | aspartyl protease family protein | - |
| LDB26_RS20055 | 133579..133998 | - | 420 | WP_007406847.1 | helix-turn-helix domain-containing protein | - |
| LDB26_RS20060 | 134074..134700 | + | 627 | WP_257542277.1 | cation transporter | - |
| LDB26_RS20065 | 134700..136667 | + | 1968 | WP_004212871.1 | cytochrome c/FTR1 family iron permease | - |
| LDB26_RS20070 | 136708..137037 | + | 330 | WP_004212873.1 | hypothetical protein | - |
| LDB26_RS20075 | 137098..138375 | + | 1278 | WP_013039111.1 | TolC family protein | - |
| LDB26_RS20080 | 138375..139553 | + | 1179 | WP_004212877.1 | efflux RND transporter periplasmic adaptor subunit | - |
| LDB26_RS20085 | 139557..142802 | + | 3246 | WP_004212878.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| LDB26_RS20090 | 142856..143344 | + | 489 | WP_257542279.1 | SRPBCC domain-containing protein | - |
| LDB26_RS20095 | 143341..143718 | + | 378 | WP_009824022.1 | hypothetical protein | - |
| LDB26_RS20100 | 143766..144179 | + | 414 | WP_004212881.1 | hypothetical protein | - |
| LDB26_RS20105 | 144183..144869 | + | 687 | WP_004212882.1 | hypothetical protein | - |
| LDB26_RS20110 | 144866..145474 | + | 609 | WP_004212885.1 | cation transporter | - |
| LDB26_RS20115 | 145471..147972 | + | 2502 | WP_004212886.1 | heavy metal translocating P-type ATPase | - |
| LDB26_RS20120 | 147969..148718 | + | 750 | WP_004212890.1 | HAD-IIB family hydrolase | - |
| LDB26_RS20125 | 148915..151806 | - | 2892 | WP_013849879.1 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| LDB26_RS20130 | 151932..152552 | + | 621 | WP_008832583.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| LDB26_RS20135 | 152549..153079 | + | 531 | WP_007686150.1 | GNAT family N-acetyltransferase | - |
| LDB26_RS20140 | 153146..153301 | - | 156 | WP_257542436.1 | hypothetical protein | - |
| LDB26_RS20145 | 153331..154299 | - | 969 | WP_225870698.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| LDB26_RS20150 | 154340..154840 | - | 501 | Protein_172 | Tn3 family transposase TnpA_ISYps3 | Transposase |
| LDB26_RS20155 | 154901..155665 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| LDB26_RS20160 | 155722..156843 | + | 1122 | Protein_174 | MFS transporter | - |
| LDB26_RS20165 | 156854..157420 | + | 567 | WP_008786762.1 | TetR/AcrR family transcriptional regulator | - |
| LDB26_RS20170 | 157563..160016 | + | 2454 | WP_257542281.1 | Tn3 family transposase TnpA_ISYps3 | Transposase |
| LDB26_RS20175 | 160035..160799 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|