MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 86126 bp
Accession: NZ_CP084398 Location: 1673111..1759236 Organism: Sphingobium sp. CFD-1 Replicon: chromosome
Accession: NZ_CP084398 Location: 1673111..1759236 Organism: Sphingobium sp. CFD-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB26_RS08550 | 1670031..1670477 | + | 447 | WP_257542024.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| LDB26_RS08555 | 1670474..1671460 | + | 987 | WP_257542026.1 | phosphotransferase | - |
| LDB26_RS08560 | 1671457..1672167 | + | 711 | WP_062065687.1 | nucleotidyltransferase family protein | - |
| LDB26_RS08565 | 1672160..1675135 | + | 2976 | WP_257541618.1 | double-strand break repair protein AddB | - |
| LDB26_RS08570 | 1675116..1678526 | + | 3411 | WP_257541620.1 | double-strand break repair helicase AddA | - |
| LDB26_RS08575 | 1678592..1678912 | + | 321 | WP_062065695.1 | thioredoxin TrxA | - |
| LDB26_RS08580 | 1678993..1679790 | - | 798 | WP_257541622.1 | inositol monophosphatase family protein | - |
| LDB26_RS08585 | 1679790..1681016 | - | 1227 | WP_257541624.1 | bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ | - |
| LDB26_RS08590 | 1681225..1683960 | + | 2736 | WP_062065708.1 | preprotein translocase subunit SecA | - |
| LDB26_RS08595 | 1684384..1684752 | + | 369 | WP_257541627.1 | hypothetical protein | - |
| LDB26_RS08600 | 1684749..1686032 | + | 1284 | WP_257541629.1 | relaxase | - |
| LDB26_RS08605 | 1686290..1686460 | + | 171 | WP_257541631.1 | hypothetical protein | - |
| LDB26_RS08610 | 1686477..1686683 | - | 207 | WP_257541633.1 | hypothetical protein | - |
| LDB26_RS08615 | 1687006..1687143 | + | 138 | WP_157081375.1 | hypothetical protein | - |
| LDB26_RS08620 | 1687204..1687878 | - | 675 | WP_257541635.1 | hypothetical protein | - |
| LDB26_RS08625 | 1688050..1688961 | - | 912 | WP_257541637.1 | zincin-like metallopeptidase domain-containing protein | - |
| LDB26_RS08630 | 1689235..1691574 | - | 2340 | WP_257541639.1 | hypothetical protein | - |
| LDB26_RS08635 | 1691571..1693133 | - | 1563 | WP_257541641.1 | hypothetical protein | - |
| LDB26_RS08640 | 1693126..1695132 | - | 2007 | WP_257541643.1 | ATP-binding protein | - |
| LDB26_RS08645 | 1695129..1696358 | - | 1230 | WP_257541645.1 | GIY-YIG nuclease family protein | - |
| LDB26_RS08650 | 1696339..1698399 | - | 2061 | WP_257541648.1 | DEAD/DEAH box helicase | - |
| LDB26_RS08655 | 1698396..1698572 | - | 177 | WP_257541650.1 | hypothetical protein | - |
| LDB26_RS08660 | 1698692..1700050 | - | 1359 | WP_197672717.1 | transposase | - |
| LDB26_RS08665 | 1700115..1702625 | - | 2511 | WP_257541652.1 | lactate dehydrogenase | - |
| LDB26_RS08670 | 1703204..1703401 | + | 198 | WP_257541654.1 | hypothetical protein | - |
| LDB26_RS08675 | 1703455..1704675 | - | 1221 | WP_257541656.1 | hypothetical protein | - |
| LDB26_RS08680 | 1704867..1705208 | + | 342 | WP_257541658.1 | hypothetical protein | - |
| LDB26_RS08685 | 1705289..1706062 | + | 774 | WP_257541660.1 | hypothetical protein | - |
| LDB26_RS08690 | 1706103..1707593 | + | 1491 | WP_257541662.1 | type IV secretory system conjugative DNA transfer family protein | - |
| LDB26_RS08695 | 1707719..1707982 | + | 264 | WP_257541665.1 | hypothetical protein | - |
| LDB26_RS08700 | 1708245..1708544 | + | 300 | WP_257541667.1 | hypothetical protein | - |
| LDB26_RS08705 | 1708541..1710082 | + | 1542 | WP_257541669.1 | hypothetical protein ; Integrase | Integrase |
| LDB26_RS08710 | 1710410..1710895 | - | 486 | WP_257541671.1 | GNAT family N-acetyltransferase | - |
| LDB26_RS08715 | 1711088..1711417 | + | 330 | WP_257541673.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LDB26_RS08720 | 1711431..1711859 | + | 429 | WP_257541675.1 | arsenate reductase (glutaredoxin) | - |
| LDB26_RS08725 | 1711863..1712921 | + | 1059 | WP_257541677.1 | ACR3 family arsenite efflux transporter | - |
| LDB26_RS08730 | 1712926..1713681 | + | 756 | WP_257541679.1 | arsenical resistance protein ArsH | - |
| LDB26_RS08735 | 1713836..1716178 | - | 2343 | WP_257541681.1 | DEAD/DEAH box helicase family protein | - |
| LDB26_RS08740 | 1716166..1718031 | - | 1866 | WP_257541683.1 | restriction endonuclease subunit S | - |
| LDB26_RS08745 | 1718028..1719479 | - | 1452 | WP_257541685.1 | class I SAM-dependent DNA methyltransferase | - |
| LDB26_RS08750 | 1720898..1721407 | - | 510 | WP_257541687.1 | hypothetical protein | - |
| LDB26_RS08755 | 1722002..1722931 | - | 930 | WP_257542029.1 | nucleotidyltransferase and HEPN domain-containing protein | - |
| LDB26_RS08760 | 1722984..1723232 | - | 249 | WP_257541689.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| LDB26_RS08765 | 1723229..1724329 | - | 1101 | WP_257541691.1 | hypothetical protein ; Integrase | Integrase |
| LDB26_RS08770 | 1724758..1725012 | + | 255 | WP_257541693.1 | plasmid stabilization protein | Antitoxin Detail |
| LDB26_RS08775 | 1725009..1725416 | + | 408 | WP_257541695.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LDB26_RS08780 | 1725472..1725762 | + | 291 | WP_257541697.1 | putative quinol monooxygenase | - |
| LDB26_RS08785 | 1726403..1727311 | + | 909 | WP_257542031.1 | diiron oxygenase | - |
| LDB26_RS08790 | 1727330..1727521 | + | 192 | WP_257541700.1 | rubredoxin | - |
| LDB26_RS08795 | 1727578..1728891 | - | 1314 | WP_257541702.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| LDB26_RS08800 | 1729072..1729821 | + | 750 | WP_257541704.1 | glutamine amidotransferase | - |
| LDB26_RS08805 | 1729859..1730095 | + | 237 | Protein_1730 | serine hydroxymethyltransferase | - |
| LDB26_RS08810 | 1730352..1731086 | + | 735 | WP_257541706.1 | hypothetical protein | - |
| LDB26_RS08815 | 1731110..1731736 | + | 627 | WP_257541708.1 | GTP cyclohydrolase I FolE | - |
| LDB26_RS08820 | 1731733..1732941 | + | 1209 | WP_257541710.1 | MFS transporter | - |
| LDB26_RS08825 | 1733023..1733976 | + | 954 | WP_257541712.1 | zincin-like metallopeptidase domain-containing protein | - |
| LDB26_RS08830 | 1733976..1734923 | + | 948 | WP_257541714.1 | hypothetical protein | - |
| LDB26_RS08835 | 1735083..1737212 | + | 2130 | WP_257541716.1 | ParB/RepB/Spo0J family partition protein | - |
| LDB26_RS08840 | 1737312..1737788 | + | 477 | WP_257541718.1 | hypothetical protein | - |
| LDB26_RS08845 | 1738013..1738174 | + | 162 | WP_257541720.1 | hypothetical protein | - |
| LDB26_RS08850 | 1738593..1738757 | + | 165 | WP_257541723.1 | hypothetical protein | - |
| LDB26_RS08855 | 1738958..1739506 | + | 549 | WP_257541725.1 | hypothetical protein | - |
| LDB26_RS08860 | 1739572..1739988 | + | 417 | WP_257541727.1 | hypothetical protein | - |
| LDB26_RS08865 | 1739981..1740625 | + | 645 | WP_257541729.1 | antitoxin of toxin-antitoxin stability system | - |
| LDB26_RS08870 | 1740632..1741021 | - | 390 | WP_257541732.1 | type II toxin-antitoxin system VapC family toxin | - |
| LDB26_RS08875 | 1741008..1741283 | - | 276 | WP_257541734.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| LDB26_RS08880 | 1741450..1743693 | + | 2244 | Protein_1745 | strawberry notch family protein | - |
| LDB26_RS08885 | 1743801..1744805 | - | 1005 | WP_009823939.1 | Tyrosine recombinase XerC | VF |
| LDB26_RS08890 | 1744802..1746157 | - | 1356 | WP_009823940.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| LDB26_RS08895 | 1746154..1747386 | - | 1233 | WP_007015824.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LDB26_RS08900 | 1747547..1747846 | + | 300 | WP_257541736.1 | hypothetical protein | - |
| LDB26_RS08905 | 1747992..1749539 | + | 1548 | WP_030540400.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LDB26_RS08910 | 1749533..1750447 | + | 915 | WP_030540399.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LDB26_RS08915 | 1750444..1751448 | + | 1005 | WP_030540398.1 | Tyrosine recombinase XerC | VF |
| LDB26_RS08920 | 1751539..1753356 | + | 1818 | Protein_1753 | strawberry notch C-terminal domain-containing protein | - |
| LDB26_RS08925 | 1753357..1754394 | + | 1038 | WP_257541738.1 | toprim domain-containing protein | - |
| LDB26_RS08930 | 1754727..1755659 | + | 933 | WP_257542033.1 | DUF2493 domain-containing protein | - |
| LDB26_RS08935 | 1755825..1756241 | + | 417 | WP_257541741.1 | hypothetical protein | - |
| LDB26_RS08940 | 1756968..1757369 | + | 402 | WP_257541743.1 | single-stranded DNA-binding protein | - |
| LDB26_RS08945 | 1757619..1757834 | + | 216 | WP_257541745.1 | DUF6499 domain-containing protein | - |
| LDB26_RS08950 | 1757881..1758402 | + | 522 | WP_257541747.1 | DUF2285 domain-containing protein | - |
| LDB26_RS08955 | 1758442..1758735 | - | 294 | WP_257541749.1 | DUF2285 domain-containing protein | - |
| LDB26_RS08960 | 1759204..1759470 | + | 267 | WP_257542035.1 | helix-turn-helix domain-containing protein | - |
| LDB26_RS08965 | 1759471..1760511 | + | 1041 | WP_257541751.1 | replication initiator protein A | - |
| LDB26_RS08970 | 1760508..1761161 | + | 654 | WP_257541753.1 | ParA family partition ATPase | - |
| LDB26_RS08975 | 1761158..1761412 | + | 255 | WP_257541755.1 | hypothetical protein | - |
| LDB26_RS08980 | 1761409..1761927 | + | 519 | WP_257541757.1 | DUF2840 domain-containing protein | - |
| LDB26_RS08985 | 1761924..1762469 | + | 546 | WP_257541760.1 | S26 family signal peptidase | - |
| LDB26_RS08990 | 1762537..1762884 | + | 348 | WP_257541762.1 | DUF736 domain-containing protein | - |
| LDB26_RS08995 | 1762881..1763813 | + | 933 | WP_257541764.1 | lytic transglycosylase domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|