MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 135813 bp
Accession: NZ_CP084398 Location: 1450428..1586240 Organism: Sphingobium sp. CFD-1 Replicon: chromosome
Accession: NZ_CP084398 Location: 1450428..1586240 Organism: Sphingobium sp. CFD-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB26_RS07500 | 1445543..1445998 | + | 456 | WP_257541471.1 | MaoC family dehydratase | - |
| LDB26_RS07505 | 1446367..1447134 | - | 768 | WP_213500153.1 | IS21-like element helper ATPase IstB | - |
| LDB26_RS07510 | 1447131..1448624 | - | 1494 | WP_257541944.1 | IS21 family transposase | - |
| LDB26_RS07515 | 1448670..1448879 | + | 210 | WP_257541473.1 | hypothetical protein | - |
| LDB26_RS07520 | 1449054..1450037 | + | 984 | WP_257541475.1 | rod shape-determining protein | - |
| LDB26_RS07525 | 1450193..1450894 | + | 702 | WP_257541477.1 | VIT family protein | - |
| LDB26_RS07530 | 1451111..1453699 | + | 2589 | WP_257541479.1 | Potassium-transporting ATPase ATP-binding subunit | VF |
| LDB26_RS07535 | 1453996..1455465 | + | 1470 | Protein_1479 | hypothetical protein | VF |
| LDB26_RS07540 | 1455547..1456206 | + | 660 | WP_257541481.1 | NAD(P)H-dependent oxidoreductase | - |
| LDB26_RS07545 | 1456358..1456957 | - | 600 | WP_257541483.1 | NAD(P)H:quinone oxidoreductase | - |
| LDB26_RS07550 | 1456954..1457766 | - | 813 | WP_257541485.1 | class III extradiol ring-cleavage dioxygenase | - |
| LDB26_RS07555 | 1457772..1458179 | - | 408 | WP_257542018.1 | DoxX family protein | - |
| LDB26_RS07560 | 1458283..1459155 | + | 873 | WP_257541487.1 | LysR family transcriptional regulator | - |
| LDB26_RS07565 | 1459556..1460935 | + | 1380 | WP_226949049.1 | hypothetical protein ; Integrase | Integrase |
| LDB26_RS07570 | 1461347..1461649 | - | 303 | WP_142634134.1 | PIN domain-containing protein | - |
| LDB26_RS07575 | 1462145..1462702 | - | 558 | WP_142634132.1 | 3'-5' exonuclease | - |
| LDB26_RS07580 | 1462699..1463865 | - | 1167 | WP_142634130.1 | hypothetical protein | - |
| LDB26_RS07585 | 1463865..1464761 | - | 897 | WP_142634128.1 | ATP-binding protein | - |
| LDB26_RS07590 | 1464758..1465252 | - | 495 | WP_185928742.1 | hypothetical protein | - |
| LDB26_RS07595 | 1465255..1466199 | - | 945 | WP_257541489.1 | CBASS oligonucleotide cyclase | - |
| LDB26_RS07600 | 1466402..1467466 | + | 1065 | WP_142634124.1 | XRE family transcriptional regulator | - |
| LDB26_RS07605 | 1467470..1467961 | + | 492 | WP_142634122.1 | hypothetical protein | - |
| LDB26_RS07610 | 1468480..1471125 | + | 2646 | WP_257541491.1 | TerB N-terminal domain-containing protein | - |
| LDB26_RS07615 | 1471125..1472429 | + | 1305 | WP_142634120.1 | ATP-binding protein | - |
| LDB26_RS07620 | 1472426..1474594 | + | 2169 | WP_142634118.1 | DEAD/DEAH box helicase | - |
| LDB26_RS07625 | 1474758..1475828 | - | 1071 | WP_257541493.1 | WYL domain-containing protein | - |
| LDB26_RS07630 | 1475878..1476090 | + | 213 | WP_257541496.1 | hypothetical protein | - |
| LDB26_RS07635 | 1476216..1479542 | + | 3327 | WP_257541498.1 | TM0106 family RecB-like putative nuclease | - |
| LDB26_RS07640 | 1479592..1479879 | + | 288 | WP_257541500.1 | hypothetical protein | - |
| LDB26_RS07645 | 1480069..1481793 | + | 1725 | WP_257541502.1 | DNA recombination protein RmuC | - |
| LDB26_RS07650 | 1481908..1482852 | - | 945 | WP_257541504.1 | hypothetical protein | - |
| LDB26_RS07655 | 1482816..1483625 | + | 810 | WP_257541507.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LDB26_RS07660 | 1484213..1484731 | + | 519 | WP_142634106.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| LDB26_RS07665 | 1484962..1485252 | - | 291 | WP_142634104.1 | DUF2285 domain-containing protein | - |
| LDB26_RS07670 | 1485283..1485621 | - | 339 | WP_142634102.1 | hypothetical protein | - |
| LDB26_RS07675 | 1486166..1486723 | + | 558 | Protein_1507 | toprim domain-containing protein | - |
| LDB26_RS07680 | 1486922..1488559 | + | 1638 | WP_142637664.1 | PRTRC system ParB family protein | - |
| LDB26_RS07685 | 1488597..1489031 | + | 435 | WP_142634100.1 | PRTRC system protein E | - |
| LDB26_RS07690 | 1489075..1489281 | + | 207 | WP_142634098.1 | PRTRC system protein C | - |
| LDB26_RS07695 | 1489412..1490446 | + | 1035 | WP_257541509.1 | hypothetical protein | - |
| LDB26_RS07700 | 1490455..1491273 | + | 819 | WP_142634094.1 | PRTRC system protein B | - |
| LDB26_RS07705 | 1491270..1491932 | + | 663 | WP_142634092.1 | PRTRC system protein A | - |
| LDB26_RS07710 | 1491922..1492680 | + | 759 | WP_142634090.1 | PRTRC system ThiF family protein | - |
| LDB26_RS07715 | 1492795..1493070 | + | 276 | WP_142634088.1 | hypothetical protein | - |
| LDB26_RS07720 | 1493067..1493351 | + | 285 | WP_142634086.1 | hypothetical protein | - |
| LDB26_RS07725 | 1493411..1493887 | + | 477 | WP_142634085.1 | hypothetical protein | - |
| LDB26_RS07730 | 1493909..1495147 | + | 1239 | WP_257541511.1 | hypothetical protein | - |
| LDB26_RS07735 | 1495268..1500412 | + | 5145 | WP_257541513.1 | lactate dehydrogenase | - |
| LDB26_RS07740 | 1500484..1501179 | + | 696 | WP_257541515.1 | hypothetical protein | - |
| LDB26_RS07745 | 1501401..1502522 | + | 1122 | WP_257541518.1 | hypothetical protein | - |
| LDB26_RS07750 | 1502615..1503262 | + | 648 | WP_021243927.1 | hypothetical protein | - |
| LDB26_RS07755 | 1503274..1503735 | + | 462 | WP_021243928.1 | hypothetical protein | - |
| LDB26_RS07760 | 1503782..1504510 | + | 729 | WP_021243929.1 | hypothetical protein | - |
| LDB26_RS07765 | 1504514..1504762 | + | 249 | WP_021243930.1 | hypothetical protein | - |
| LDB26_RS07770 | 1504842..1505321 | + | 480 | WP_021243931.1 | hypothetical protein | - |
| LDB26_RS07775 | 1505416..1505817 | + | 402 | WP_021243932.1 | hypothetical protein | - |
| LDB26_RS07780 | 1505974..1506168 | + | 195 | WP_021243933.1 | hypothetical protein | - |
| LDB26_RS07785 | 1506299..1507783 | + | 1485 | WP_257541520.1 | DUF3560 domain-containing protein | - |
| LDB26_RS07790 | 1507780..1508298 | + | 519 | WP_021243935.1 | hypothetical protein | - |
| LDB26_RS07795 | 1508301..1508741 | + | 441 | WP_021243936.1 | hypothetical protein | - |
| LDB26_RS07800 | 1508892..1509791 | + | 900 | WP_257541523.1 | hypothetical protein | - |
| LDB26_RS07805 | 1509821..1510018 | + | 198 | WP_257541525.1 | hypothetical protein | - |
| LDB26_RS07810 | 1510211..1510585 | + | 375 | WP_257541527.1 | hypothetical protein | - |
| LDB26_RS07815 | 1510662..1510805 | + | 144 | WP_021243937.1 | DUF1419 domain-containing protein | - |
| LDB26_RS07820 | 1511051..1511239 | + | 189 | WP_059140294.1 | hypothetical protein | - |
| LDB26_RS07825 | 1511271..1511465 | + | 195 | WP_021243939.1 | hypothetical protein | - |
| LDB26_RS07830 | 1511462..1512010 | + | 549 | WP_021243940.1 | hypothetical protein | - |
| LDB26_RS07835 | 1512145..1512639 | + | 495 | WP_142634079.1 | hypothetical protein | - |
| LDB26_RS07840 | 1512740..1513141 | + | 402 | WP_021243942.1 | hypothetical protein | - |
| LDB26_RS07845 | 1513211..1513714 | + | 504 | WP_031290664.1 | hypothetical protein | - |
| LDB26_RS07850 | 1513802..1514071 | + | 270 | WP_051187071.1 | hypothetical protein | - |
| LDB26_RS07855 | 1514068..1514523 | + | 456 | WP_021243945.1 | PIN domain-containing protein | - |
| LDB26_RS07860 | 1514544..1514693 | - | 150 | WP_021243946.1 | hypothetical protein | - |
| LDB26_RS07865 | 1514987..1515382 | - | 396 | WP_021243947.1 | hypothetical protein | - |
| LDB26_RS07870 | 1515526..1515723 | + | 198 | WP_142634077.1 | DUF5818 domain-containing protein | - |
| LDB26_RS07875 | 1516296..1516772 | + | 477 | WP_021243949.1 | DUF736 family protein | - |
| LDB26_RS07880 | 1516855..1517877 | + | 1023 | WP_031290669.1 | SLOG family protein | - |
| LDB26_RS07885 | 1518043..1518372 | - | 330 | WP_021243951.1 | hypothetical protein | - |
| LDB26_RS07890 | 1518841..1519140 | + | 300 | WP_048575782.1 | CopG family transcriptional regulator | - |
| LDB26_RS07895 | 1519313..1521451 | + | 2139 | WP_048575781.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LDB26_RS07900 | 1521448..1524414 | + | 2967 | WP_257541529.1 | MobF family relaxase | - |
| LDB26_RS07905 | 1524426..1525013 | + | 588 | WP_048575779.1 | restriction endonuclease | - |
| LDB26_RS07910 | 1525010..1525567 | + | 558 | WP_048575778.1 | hypothetical protein | VF |
| LDB26_RS07915 | 1525786..1526019 | - | 234 | WP_066519830.1 | hypothetical protein | - |
| LDB26_RS07920 | 1526301..1526837 | + | 537 | WP_257541531.1 | hypothetical protein | - |
| LDB26_RS07925 | 1526811..1528022 | - | 1212 | WP_011950834.1 | IS256 family transposase ISSpma2 | Transposase |
| LDB26_RS07930 | 1528528..1529646 | + | 1119 | WP_082166040.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| LDB26_RS07940 | 1531174..1531551 | - | 378 | WP_082166039.1 | sulfite exporter TauE/SafE family protein | - |
| LDB26_RS07945 | 1531649..1532539 | + | 891 | WP_048575776.1 | LysR family transcriptional regulator | - |
| LDB26_RS07950 | 1532560..1533213 | - | 654 | WP_048575775.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| LDB26_RS07955 | 1533227..1534150 | - | 924 | WP_048575774.1 | alpha/beta fold hydrolase | - |
| LDB26_RS07960 | 1534212..1534781 | + | 570 | WP_048575773.1 | HTH-type transcriptional regulator BetI | VF |
| LDB26_RS07965 | 1534778..1535371 | - | 594 | WP_020820686.1 | ABC-type transport auxiliary lipoprotein family protein | - |
| LDB26_RS07970 | 1535404..1536339 | - | 936 | WP_037444199.1 | MlaD family protein | - |
| LDB26_RS07975 | 1536339..1537115 | - | 777 | WP_226949045.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LDB26_RS07980 | 1537124..1538191 | - | 1068 | WP_257541533.1 | ABC transporter permease | - |
| LDB26_RS07985 | 1538230..1539447 | - | 1218 | WP_037444207.1 | phospholipase A | - |
| LDB26_RS07990 | 1539444..1540217 | - | 774 | WP_037444209.1 | hypothetical protein | VF |
| LDB26_RS07995 | 1540214..1541404 | - | 1191 | WP_037444212.1 | acetate/propionate family kinase | - |
| LDB26_RS08000 | 1541401..1542822 | - | 1422 | WP_037444215.1 | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase | - |
| LDB26_RS08005 | 1542826..1544583 | - | 1758 | WP_048575771.1 | alpha/beta fold hydrolase | - |
| LDB26_RS08010 | 1544609..1544935 | - | 327 | WP_245843010.1 | oleate hydratase | - |
| LDB26_RS08015 | 1545173..1546528 | - | 1356 | WP_003168745.1 | IS1380 family transposase ISKpn23 | Transposase |
| LDB26_RS08020 | 1546643..1547500 | - | 858 | WP_233423697.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LDB26_RS08025 | 1547532..1548716 | - | 1185 | WP_037444218.1 | acetyl-CoA C-acetyltransferase | - |
| LDB26_RS08030 | 1548740..1549462 | - | 723 | WP_037444222.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| LDB26_RS08035 | 1550030..1550614 | - | 585 | WP_257541536.1 | TetR/AcrR family transcriptional regulator | - |
| LDB26_RS08040 | 1550876..1551604 | + | 729 | WP_020817741.1 | hypothetical protein | VF |
| LDB26_RS08045 | 1551688..1552131 | + | 444 | WP_037444229.1 | hypothetical protein | - |
| LDB26_RS08050 | 1552306..1553712 | + | 1407 | WP_048578300.1 | hypothetical protein | VF |
| LDB26_RS08055 | 1553709..1554785 | + | 1077 | WP_037444232.1 | efflux RND transporter periplasmic adaptor subunit | - |
| LDB26_RS08060 | 1554790..1557555 | + | 2766 | WP_089220944.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LDB26_RS08065 | 1557557..1558687 | + | 1131 | WP_088137969.1 | ABC transporter permease | - |
| LDB26_RS08070 | 1558735..1559139 | + | 405 | WP_245843016.1 | phasin family protein | - |
| LDB26_RS08075 | 1559199..1560689 | + | 1491 | WP_081261070.1 | IS21 family transposase ISSsp5 | Transposase |
| LDB26_RS08080 | 1560686..1561453 | + | 768 | WP_063976957.1 | IS21 family transposase ISSsp5 | Transposase |
| LDB26_RS08085 | 1561579..1562175 | - | 597 | Protein_1589 | MBL fold metallo-hydrolase | - |
| LDB26_RS08090 | 1562409..1563341 | + | 933 | WP_048578303.1 | 1-phosphofructokinase family hexose kinase | - |
| LDB26_RS08095 | 1563533..1563691 | + | 159 | WP_158500997.1 | hypothetical protein | - |
| LDB26_RS08100 | 1563809..1564687 | + | 879 | WP_202408155.1 | LuxR family transcriptional regulator | - |
| LDB26_RS08105 | 1564955..1565200 | + | 246 | WP_237449632.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| LDB26_RS08110 | 1565197..1565724 | + | 528 | WP_048577672.1 | hypothetical protein | Toxin Detail |
| LDB26_RS08115 | 1565968..1566423 | + | 456 | WP_048577673.1 | hypothetical protein | - |
| LDB26_RS08120 | 1566410..1570180 | - | 3771 | WP_048577674.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LDB26_RS08125 | 1570195..1571619 | - | 1425 | WP_048577675.1 | conjugal transfer protein TraH | - |
| LDB26_RS08130 | 1571665..1572249 | - | 585 | WP_048577676.1 | hypothetical protein | - |
| LDB26_RS08135 | 1572246..1573118 | - | 873 | WP_231923301.1 | conjugal transfer protein TraF | - |
| LDB26_RS08140 | 1573115..1573711 | - | 597 | WP_048577677.1 | S26 family signal peptidase | - |
| LDB26_RS08145 | 1573683..1574561 | - | 879 | WP_048577678.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LDB26_RS08150 | 1574533..1575648 | - | 1116 | WP_160985500.1 | conjugal transfer protein TraN | - |
| LDB26_RS08155 | 1575645..1577534 | - | 1890 | WP_254908045.1 | hypothetical protein | - |
| LDB26_RS08160 | 1577902..1578918 | - | 1017 | WP_086485618.1 | TraU family protein | - |
| LDB26_RS08165 | 1578915..1579574 | - | 660 | WP_254908046.1 | conjugal transfer protein TraW | - |
| LDB26_RS08170 | 1579564..1579800 | - | 237 | WP_086485949.1 | hypothetical protein | - |
| LDB26_RS08175 | 1579797..1580204 | - | 408 | WP_086485619.1 | hypothetical protein | - |
| LDB26_RS08180 | 1580201..1580527 | - | 327 | WP_086485620.1 | hypothetical protein | - |
| LDB26_RS08185 | 1580524..1583046 | - | 2523 | WP_086485621.1 | TraC family protein | - |
| LDB26_RS08190 | 1583043..1583636 | - | 594 | WP_086485622.1 | TraV family lipoprotein | - |
| LDB26_RS08195 | 1583672..1584997 | - | 1326 | WP_086485623.1 | TraB/VirB10 family protein | - |
| LDB26_RS08200 | 1584994..1585752 | - | 759 | WP_086485624.1 | type-F conjugative transfer system secretin TraK | - |
| LDB26_RS08205 | 1585736..1586374 | - | 639 | WP_086485625.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| LDB26_RS08210 | 1586384..1586650 | - | 267 | WP_086485626.1 | type IV conjugative transfer system protein TraL | - |
| LDB26_RS08215 | 1586784..1587101 | - | 318 | WP_086485627.1 | hypothetical protein | - |
| LDB26_RS08220 | 1587258..1588040 | - | 783 | WP_160985502.1 | DsbC family protein | - |
| LDB26_RS08225 | 1588027..1588335 | - | 309 | WP_086485629.1 | hypothetical protein | - |
| LDB26_RS08230 | 1588783..1589199 | + | 417 | WP_086485630.1 | helix-turn-helix transcriptional regulator | - |
| LDB26_RS08235 | 1589331..1590335 | - | 1005 | WP_257541538.1 | CDF family Co(II)/Ni(II) efflux transporter DmeF | - |
| LDB26_RS08240 | 1590332..1590607 | - | 276 | WP_086485632.1 | metal/formaldehyde-sensitive transcriptional repressor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|