MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 124670 bp
Accession: NZ_CP084390 Location: 1..124670 Organism: Lactobacillus helsingborgensis strain IBH002 Replicon: plasmid pIBH002-1
Accession: NZ_CP084390 Location: 1..124670 Organism: Lactobacillus helsingborgensis strain IBH002 Replicon: plasmid pIBH002-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDX53_RS08865 (LDX53_08880) | 139..507 | + | 369 | WP_046327890.1 | hypothetical protein | - |
| LDX53_RS08870 (LDX53_08885) | 606..2066 | + | 1461 | WP_046327891.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| LDX53_RS08875 (LDX53_08890) | 2142..2981 | - | 840 | WP_052727804.1 | D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS | VF |
| LDX53_RS08880 (LDX53_08895) | 3722..4297 | + | 576 | WP_046325811.1 | hypothetical protein | - |
| LDX53_RS08885 (LDX53_08900) | 4284..5099 | + | 816 | WP_046325812.1 | preprotein translocase subunit SecG | - |
| LDX53_RS08890 (LDX53_08905) | 5112..5273 | + | 162 | WP_167334252.1 | hypothetical protein | - |
| LDX53_RS08895 (LDX53_08910) | 5312..7768 | + | 2457 | WP_046325813.1 | preprotein translocase subunit SecA | - |
| LDX53_RS08900 (LDX53_08915) | 7772..9058 | + | 1287 | WP_046325814.1 | preprotein translocase subunit SecY | - |
| LDX53_RS08905 (LDX53_08920) | 9721..10878 | - | 1158 | WP_046325815.1 | helveticin J family class III bacteriocin | - |
| LDX53_RS08910 (LDX53_08925) | 11068..12162 | - | 1095 | WP_046325816.1 | SLAP domain-containing protein | - |
| LDX53_RS08915 (LDX53_08930) | 12285..13010 | - | 726 | WP_046325817.1 | helveticin J family class III bacteriocin | - |
| LDX53_RS08920 (LDX53_08935) | 13302..13562 | + | 261 | WP_046325818.1 | hypothetical protein | - |
| LDX53_RS08925 (LDX53_08940) | 13555..13860 | + | 306 | WP_046325819.1 | phage holin, LLH family | - |
| LDX53_RS08930 (LDX53_08945) | 13965..14789 | - | 825 | WP_046325820.1 | helix-turn-helix transcriptional regulator | - |
| LDX53_RS08935 (LDX53_08950) | 15008..15646 | + | 639 | WP_052724688.1 | hypothetical protein | - |
| LDX53_RS08940 (LDX53_08955) | 15667..15912 | + | 246 | WP_046325821.1 | hypothetical protein | - |
| LDX53_RS08945 (LDX53_08960) | 16557..18884 | - | 2328 | WP_046325822.1 | P-loop NTPase fold protein | - |
| LDX53_RS08950 (LDX53_08965) | 18961..21252 | - | 2292 | WP_046325823.1 | P-loop NTPase fold protein | - |
| LDX53_RS08955 (LDX53_08970) | 21569..21943 | - | 375 | WP_046325824.1 | hypothetical protein | - |
| LDX53_RS08960 (LDX53_08975) | 21944..22183 | - | 240 | WP_046325825.1 | hypothetical protein | - |
| LDX53_RS08965 (LDX53_08980) | 22350..22961 | - | 612 | WP_046325826.1 | tyrosine-type recombinase/integrase | - |
| LDX53_RS08970 (LDX53_08985) | 23319..23708 | - | 390 | WP_046325827.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LDX53_RS08975 (LDX53_08990) | 23731..23994 | - | 264 | WP_046325828.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| LDX53_RS08980 (LDX53_08995) | 24485..25114 | + | 630 | WP_179853393.1 | LysM peptidoglycan-binding domain-containing protein | - |
| LDX53_RS08985 (LDX53_09000) | 25291..26343 | + | 1053 | WP_046325829.1 | tyrosine recombinase XerS | - |
| LDX53_RS08990 (LDX53_09005) | 27680..27787 | + | 108 | Protein_26 | hypothetical protein | - |
| LDX53_RS08995 (LDX53_09010) | 27981..29564 | - | 1584 | WP_046325831.1 | Protein glycosylation K | VF |
| LDX53_RS09000 (LDX53_09015) | 29554..31134 | - | 1581 | WP_046325832.1 | Protein glycosylation K | VF |
| LDX53_RS09005 (LDX53_09020) | 31196..32746 | - | 1551 | WP_046325833.1 | ATP-binding cassette domain-containing protein | - |
| LDX53_RS09010 (LDX53_09025) | 32766..34043 | - | 1278 | WP_046325834.1 | lanthionine synthetase LanC family protein | - |
| LDX53_RS09015 (LDX53_09030) | 34046..37030 | - | 2985 | WP_046325835.1 | lantibiotic dehydratase | - |
| LDX53_RS09020 | 37110..37238 | - | 129 | WP_257011527.1 | hypothetical protein | - |
| LDX53_RS09025 (LDX53_09035) | 37753..37977 | - | 225 | WP_046325836.1 | hypothetical protein | - |
| LDX53_RS09030 (LDX53_09040) | 38129..38524 | - | 396 | WP_046325837.1 | hypothetical protein | - |
| LDX53_RS09035 (LDX53_09045) | 38538..38951 | - | 414 | WP_046325838.1 | hypothetical protein | - |
| LDX53_RS09040 (LDX53_09050) | 38969..39340 | - | 372 | WP_046325839.1 | hypothetical protein | - |
| LDX53_RS09045 (LDX53_09055) | 39601..40317 | - | 717 | WP_046325840.1 | hypothetical protein | - |
| LDX53_RS09050 (LDX53_09060) | 40399..41052 | - | 654 | WP_143435150.1 | hypothetical protein | - |
| LDX53_RS09055 (LDX53_09065) | 41358..42944 | - | 1587 | WP_046325842.1 | putative ABC transporter ATP-binding protein | VF |
| LDX53_RS09060 (LDX53_09070) | 42945..44126 | - | 1182 | WP_052724690.1 | hypothetical protein | - |
| LDX53_RS09065 (LDX53_09075) | 44119..45036 | - | 918 | WP_244885274.1 | ThiF family adenylyltransferase | - |
| LDX53_RS09070 (LDX53_09080) | 45545..46045 | - | 501 | WP_046325843.1 | hypothetical protein | - |
| LDX53_RS09075 (LDX53_09085) | 46092..46838 | - | 747 | WP_046325844.1 | hypothetical protein | - |
| LDX53_RS09080 (LDX53_09090) | 46860..47330 | - | 471 | WP_046325845.1 | hypothetical protein | - |
| LDX53_RS09085 (LDX53_09095) | 47871..48557 | - | 687 | WP_052724692.1 | hypothetical protein | - |
| LDX53_RS09090 (LDX53_09100) | 48573..53204 | - | 4632 | WP_046325846.1 | hypothetical protein | - |
| LDX53_RS09095 (LDX53_09105) | 53216..55477 | - | 2262 | WP_046325847.1 | hypothetical protein | - |
| LDX53_RS09100 (LDX53_09110) | 55497..56576 | - | 1080 | WP_244885272.1 | hypothetical protein | - |
| LDX53_RS09105 (LDX53_09115) | 56641..56934 | - | 294 | WP_046325848.1 | hypothetical protein | - |
| LDX53_RS09110 (LDX53_09120) | 56951..57355 | - | 405 | WP_046325849.1 | hypothetical protein | - |
| LDX53_RS09115 (LDX53_09125) | 57396..57815 | - | 420 | WP_052724693.1 | hypothetical protein | - |
| LDX53_RS09120 (LDX53_09130) | 58053..58295 | - | 243 | WP_046325850.1 | hypothetical protein | - |
| LDX53_RS09125 (LDX53_09135) | 59311..59400 | - | 90 | WP_244885273.1 | putative holin-like toxin | - |
| LDX53_RS09130 (LDX53_09140) | 60057..60926 | - | 870 | WP_046327892.1 | hypothetical protein | - |
| LDX53_RS09135 (LDX53_09145) | 60984..61841 | - | 858 | WP_046327893.1 | hypothetical protein | - |
| LDX53_RS09140 (LDX53_09150) | 61831..62406 | - | 576 | WP_052727806.1 | JAB domain-containing protein | - |
| LDX53_RS09145 (LDX53_09155) | 62433..62648 | - | 216 | WP_046325853.1 | hypothetical protein | - |
| LDX53_RS09150 (LDX53_09160) | 62663..62980 | - | 318 | WP_046325854.1 | hypothetical protein | - |
| LDX53_RS09155 (LDX53_09165) | 62994..63515 | - | 522 | WP_046325855.1 | hypothetical protein | - |
| LDX53_RS09160 (LDX53_09170) | 63595..63858 | - | 264 | WP_046325856.1 | hypothetical protein | Antitoxin Detail |
| LDX53_RS09165 (LDX53_09175) | 63855..64106 | - | 252 | WP_046325857.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| LDX53_RS09170 (LDX53_09180) | 64103..65638 | - | 1536 | WP_046325858.1 | DUF3854 domain-containing protein | - |
| LDX53_RS09175 (LDX53_09185) | 65976..66923 | - | 948 | WP_257011528.1 | class A sortase | - |
| LDX53_RS09180 (LDX53_09190) | 66886..67212 | - | 327 | WP_046325860.1 | hypothetical protein | - |
| LDX53_RS09185 (LDX53_09195) | 67436..68002 | - | 567 | WP_046327894.1 | hypothetical protein | - |
| LDX53_RS09190 (LDX53_09200) | 67999..69378 | - | 1380 | WP_046325862.1 | hypothetical protein | - |
| LDX53_RS09195 (LDX53_09205) | 69419..69877 | - | 459 | WP_143435154.1 | hypothetical protein | - |
| LDX53_RS09200 (LDX53_09210) | 70085..71380 | - | 1296 | WP_046325864.1 | hypothetical protein | - |
| LDX53_RS09205 (LDX53_09215) | 71370..72467 | - | 1098 | WP_052724695.1 | hypothetical protein | - |
| LDX53_RS09210 (LDX53_09220) | 72471..73727 | - | 1257 | WP_046325865.1 | hypothetical protein | - |
| LDX53_RS09215 (LDX53_09225) | 74202..77225 | - | 3024 | WP_046325866.1 | VaFE repeat-containing surface-anchored protein | - |
| LDX53_RS09220 (LDX53_09230) | 77445..78431 | + | 987 | WP_046325867.1 | SLAP domain-containing protein | - |
| LDX53_RS09225 (LDX53_09235) | 78462..78722 | - | 261 | WP_052724696.1 | IS3 family transposase ISL6 | Transposase |
| LDX53_RS09230 (LDX53_09240) | 78929..79099 | - | 171 | WP_084608724.1 | IS3 family transposase IS1221A | Transposase |
| LDX53_RS09235 (LDX53_09245) | 79657..80160 | + | 504 | WP_046325868.1 | hypothetical protein | - |
| LDX53_RS09240 (LDX53_09250) | 80185..80424 | + | 240 | WP_046325869.1 | hypothetical protein | - |
| LDX53_RS09245 (LDX53_09255) | 80822..81076 | - | 255 | WP_046325870.1 | hypothetical protein | - |
| LDX53_RS09250 (LDX53_09260) | 81289..82092 | - | 804 | WP_046325871.1 | hypothetical protein | VF |
| LDX53_RS09255 (LDX53_09265) | 82448..82750 | - | 303 | WP_046325872.1 | hypothetical protein | - |
| LDX53_RS09260 (LDX53_09270) | 82887..83612 | + | 726 | WP_046325873.1 | hypothetical protein | - |
| LDX53_RS09265 (LDX53_09275) | 83667..84944 | - | 1278 | WP_046325874.1 | hypothetical protein | - |
| LDX53_RS09270 (LDX53_09280) | 84950..88108 | - | 3159 | WP_046325875.1 | TraM recognition domain-containing protein | - |
| LDX53_RS09275 (LDX53_09285) | 88294..89754 | + | 1461 | WP_046325876.1 | SLAP domain-containing protein | - |
| LDX53_RS09280 (LDX53_09290) | 90010..90984 | + | 975 | WP_046325877.1 | helveticin J family class III bacteriocin | - |
| LDX53_RS09285 (LDX53_09295) | 91219..91917 | + | 699 | WP_046325878.1 | hypothetical protein | - |
| LDX53_RS09290 (LDX53_09300) | 92027..92482 | - | 456 | WP_046325879.1 | hypothetical protein | - |
| LDX53_RS09295 (LDX53_09305) | 92590..93858 | - | 1269 | WP_046325880.1 | hypothetical protein | - |
| LDX53_RS09300 (LDX53_09310) | 94063..94725 | - | 663 | WP_046325881.1 | hypothetical protein | - |
| LDX53_RS09305 (LDX53_09315) | 94737..95351 | - | 615 | WP_046325882.1 | hypothetical protein | - |
| LDX53_RS09310 (LDX53_09320) | 95344..96054 | - | 711 | WP_046325883.1 | hypothetical protein | - |
| LDX53_RS09315 (LDX53_09325) | 96065..97291 | - | 1227 | WP_084608726.1 | phage tail tip lysozyme | - |
| LDX53_RS09320 (LDX53_09330) | 97408..98169 | - | 762 | WP_046325884.1 | hypothetical protein | - |
| LDX53_RS09325 (LDX53_09335) | 98300..101371 | - | 3072 | WP_046325885.1 | MucBP domain-containing protein | - |
| LDX53_RS09330 (LDX53_09340) | 101543..101845 | + | 303 | WP_046325886.1 | hypothetical protein | - |
| LDX53_RS09335 (LDX53_09345) | 101992..102432 | - | 441 | WP_046325887.1 | hypothetical protein | - |
| LDX53_RS09340 (LDX53_09350) | 102707..103309 | + | 603 | WP_046325888.1 | signal peptidase I | - |
| LDX53_RS09345 (LDX53_09355) | 103419..103727 | - | 309 | WP_257011533.1 | HU family DNA-binding protein | - |
| LDX53_RS09350 (LDX53_09360) | 105823..107232 | + | 1410 | WP_046325788.1 | replication initiation protein | - |
| LDX53_RS09355 (LDX53_09365) | 107500..107976 | + | 477 | WP_179853392.1 | hypothetical protein | - |
| LDX53_RS09360 (LDX53_09370) | 108113..109390 | - | 1278 | WP_084619636.1 | IS3 family transposase ISL6 | Transposase |
| LDX53_RS09365 (LDX53_09375) | 109623..110912 | - | 1290 | WP_046325791.1 | hypothetical protein | - |
| LDX53_RS09370 (LDX53_09380) | 111404..114049 | - | 2646 | WP_143435140.1 | hypothetical protein | Relaxase |
| LDX53_RS09375 (LDX53_09385) | 114326..115075 | + | 750 | WP_046325793.1 | hypothetical protein | - |
| LDX53_RS09380 (LDX53_09390) | 115159..115734 | + | 576 | WP_046325794.1 | hypothetical protein | - |
| LDX53_RS09385 (LDX53_09395) | 115997..116854 | + | 858 | WP_143435142.1 | hypothetical protein | - |
| LDX53_RS09390 (LDX53_09400) | 117014..118021 | + | 1008 | WP_052727802.1 | hypothetical protein | - |
| LDX53_RS09395 (LDX53_09405) | 118061..119539 | + | 1479 | WP_143435144.1 | hypothetical protein | - |
| LDX53_RS09400 (LDX53_09410) | 119551..121188 | + | 1638 | WP_052727803.1 | hypothetical protein | - |
| LDX53_RS09405 (LDX53_09415) | 121211..122035 | - | 825 | WP_046325804.1 | site-specific integrase | - |
| LDX53_RS09410 (LDX53_09420) | 122071..122538 | + | 468 | WP_046327888.1 | hypothetical protein | - |
| LDX53_RS09415 (LDX53_09425) | 122648..123961 | + | 1314 | WP_046325806.1 | hypothetical protein | - |
| LDX53_RS09420 (LDX53_09430) | 124066..124401 | + | 336 | WP_267271896.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|