MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 131542 bp
Accession: NZ_CP084385 Location: 1..131542 Organism: Lactobacillus helsingborgensis strain IBH003 Replicon: plasmid pIBH003-1
Accession: NZ_CP084385 Location: 1..131542 Organism: Lactobacillus helsingborgensis strain IBH003 Replicon: plasmid pIBH003-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDX52_RS09110 (LDX52_09105) | 808..1494 | + | 687 | WP_052724692.1 | hypothetical protein | - |
| LDX52_RS09115 (LDX52_09110) | 2035..2505 | + | 471 | WP_046325845.1 | hypothetical protein | - |
| LDX52_RS09120 (LDX52_09115) | 2527..3273 | + | 747 | WP_046325844.1 | hypothetical protein | - |
| LDX52_RS09125 (LDX52_09120) | 3320..3820 | + | 501 | WP_046325843.1 | hypothetical protein | - |
| LDX52_RS09130 (LDX52_09125) | 4329..5246 | + | 918 | WP_244885274.1 | ThiF family adenylyltransferase | - |
| LDX52_RS09135 (LDX52_09130) | 5239..6420 | + | 1182 | WP_052724690.1 | hypothetical protein | - |
| LDX52_RS09140 (LDX52_09135) | 6421..8007 | + | 1587 | WP_046325842.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LDX52_RS09145 (LDX52_09140) | 8313..8966 | + | 654 | WP_143435150.1 | hypothetical protein | - |
| LDX52_RS09150 (LDX52_09145) | 9039..9764 | + | 726 | WP_267271864.1 | SAM-dependent DNA methyltransferase | - |
| LDX52_RS09155 (LDX52_09150) | 10014..10385 | + | 372 | WP_267271865.1 | hypothetical protein | - |
| LDX52_RS09160 (LDX52_09155) | 10403..10708 | + | 306 | WP_267271866.1 | hypothetical protein | - |
| LDX52_RS09165 (LDX52_09160) | 10907..11353 | + | 447 | WP_267271867.1 | hypothetical protein | - |
| LDX52_RS09170 (LDX52_09165) | 11374..11598 | + | 225 | WP_267271868.1 | hypothetical protein | - |
| LDX52_RS09175 (LDX52_09170) | 12459..13247 | - | 789 | WP_267271869.1 | hypothetical protein | - |
| LDX52_RS09180 (LDX52_09175) | 13244..13618 | - | 375 | WP_267271870.1 | hypothetical protein | - |
| LDX52_RS09185 (LDX52_09180) | 13819..14871 | - | 1053 | WP_267271902.1 | tyrosine recombinase XerS | - |
| LDX52_RS09190 (LDX52_09185) | 15047..15676 | - | 630 | WP_267271871.1 | LysM peptidoglycan-binding domain-containing protein | - |
| LDX52_RS09195 (LDX52_09190) | 16168..16431 | + | 264 | WP_046325828.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| LDX52_RS09200 (LDX52_09195) | 16454..16843 | + | 390 | WP_046325827.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LDX52_RS09205 (LDX52_09200) | 17200..17811 | + | 612 | WP_046325826.1 | tyrosine-type recombinase/integrase | - |
| LDX52_RS09210 (LDX52_09205) | 17978..18217 | + | 240 | WP_267271872.1 | hypothetical protein | - |
| LDX52_RS09215 (LDX52_09210) | 18218..18592 | + | 375 | WP_046325824.1 | hypothetical protein | - |
| LDX52_RS09220 (LDX52_09215) | 18909..21206 | + | 2298 | WP_267271873.1 | P-loop NTPase fold protein | - |
| LDX52_RS09225 (LDX52_09220) | 21283..23607 | + | 2325 | WP_267271874.1 | P-loop NTPase fold protein | - |
| LDX52_RS09230 (LDX52_09225) | 24214..25005 | - | 792 | WP_267271875.1 | hypothetical protein | - |
| LDX52_RS09235 (LDX52_09230) | 25011..26099 | - | 1089 | WP_267271876.1 | P-loop NTPase fold protein | - |
| LDX52_RS09240 (LDX52_09235) | 26112..28370 | - | 2259 | WP_267271877.1 | D-alanyl-lipoteichoic acid biosynthesis protein DltD | - |
| LDX52_RS09245 (LDX52_09240) | 28363..28602 | - | 240 | WP_038524744.1 | D-alanine--poly(phosphoribitol) ligase subunit 2 | VF |
| LDX52_RS09250 (LDX52_09245) | 28631..29875 | - | 1245 | WP_267271878.1 | D-alanyl-lipoteichoic acid biosynthesis protein DltB | - |
| LDX52_RS09255 (LDX52_09250) | 29875..31389 | - | 1515 | WP_267271879.1 | D-alanine--poly(phosphoribitol) ligase subunit DltA | - |
| LDX52_RS09260 (LDX52_09255) | 31724..32575 | + | 852 | WP_267271880.1 | DUF4097 family beta strand repeat-containing protein | - |
| LDX52_RS09265 (LDX52_09260) | 32619..33470 | + | 852 | WP_267271881.1 | DUF4097 family beta strand repeat-containing protein | - |
| LDX52_RS09270 | 33628..33750 | - | 123 | WP_267271882.1 | hypothetical protein | - |
| LDX52_RS09275 | 33807..33932 | - | 126 | WP_267271883.1 | hypothetical protein | - |
| LDX52_RS09280 (LDX52_09265) | 34021..36651 | - | 2631 | WP_267271884.1 | class III lanthionine synthetase LanKC | - |
| LDX52_RS09285 (LDX52_09270) | 36641..37096 | - | 456 | WP_267271885.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LDX52_RS09290 (LDX52_09275) | 37295..38569 | + | 1275 | WP_267270848.1 | ISL3 family transposase ISLhe2 | Transposase |
| LDX52_RS09295 (LDX52_09280) | 38580..39803 | - | 1224 | WP_267271903.1 | ABC transporter ATP-binding protein | - |
| LDX52_RS09300 (LDX52_09285) | 40276..40593 | - | 318 | WP_267271886.1 | phage holin, LLH family | - |
| LDX52_RS09305 (LDX52_09290) | 40590..40847 | - | 258 | WP_267271887.1 | hypothetical protein | - |
| LDX52_RS09310 (LDX52_09295) | 41140..41865 | + | 726 | WP_267271888.1 | helveticin J family class III bacteriocin | - |
| LDX52_RS09315 (LDX52_09300) | 41989..43119 | + | 1131 | WP_267271889.1 | SLAP domain-containing protein | - |
| LDX52_RS09320 (LDX52_09305) | 43383..44360 | + | 978 | WP_267271890.1 | helveticin J family class III bacteriocin | - |
| LDX52_RS09325 (LDX52_09310) | 45119..45532 | - | 414 | WP_267271891.1 | hypothetical protein | - |
| LDX52_RS09330 (LDX52_09315) | 45513..46799 | - | 1287 | WP_267271892.1 | preprotein translocase subunit SecY | - |
| LDX52_RS09335 (LDX52_09320) | 46803..49259 | - | 2457 | WP_267271893.1 | preprotein translocase subunit SecA | - |
| LDX52_RS09340 (LDX52_09325) | 49298..49459 | - | 162 | WP_167334252.1 | hypothetical protein | - |
| LDX52_RS09345 (LDX52_09330) | 49472..50320 | - | 849 | WP_267271894.1 | hypothetical protein | - |
| LDX52_RS09350 (LDX52_09335) | 50274..50849 | - | 576 | WP_046325811.1 | hypothetical protein | - |
| LDX52_RS09355 (LDX52_09340) | 51574..52410 | + | 837 | WP_052724686.1 | hypothetical protein | VF |
| LDX52_RS09360 (LDX52_09345) | 52482..53357 | - | 876 | WP_267271904.1 | IS3 family transposase ISLsa2 | Transposase |
| LDX52_RS09365 (LDX52_09350) | 53345..53878 | - | 534 | WP_267271895.1 | IS3 family transposase ISBce19 | Transposase |
| LDX52_RS09370 (LDX52_09355) | 54019..54705 | - | 687 | WP_046325810.1 | hypothetical protein | - |
| LDX52_RS09375 (LDX52_09360) | 54794..55162 | - | 369 | WP_046325809.1 | hypothetical protein | - |
| LDX52_RS09380 (LDX52_09365) | 55174..55566 | - | 393 | WP_046325808.1 | hypothetical protein | - |
| LDX52_RS09385 (LDX52_09370) | 55570..55905 | - | 336 | WP_267271896.1 | hypothetical protein | - |
| LDX52_RS09390 (LDX52_09375) | 56009..57322 | - | 1314 | WP_267271897.1 | hypothetical protein | - |
| LDX52_RS09395 (LDX52_09380) | 57432..57899 | - | 468 | WP_046327888.1 | hypothetical protein | - |
| LDX52_RS09400 (LDX52_09385) | 57935..58759 | + | 825 | WP_046325804.1 | site-specific integrase | - |
| LDX52_RS09405 (LDX52_09390) | 58782..60419 | - | 1638 | WP_052727803.1 | hypothetical protein | - |
| LDX52_RS09410 (LDX52_09395) | 60431..61909 | - | 1479 | WP_267271898.1 | hypothetical protein | - |
| LDX52_RS09415 (LDX52_09400) | 61949..62956 | - | 1008 | WP_052727802.1 | hypothetical protein | - |
| LDX52_RS09420 (LDX52_09405) | 63116..63973 | - | 858 | WP_267271899.1 | hypothetical protein | - |
| LDX52_RS09425 (LDX52_09410) | 64236..64811 | - | 576 | WP_267271900.1 | hypothetical protein | - |
| LDX52_RS09430 (LDX52_09415) | 64895..65644 | - | 750 | WP_267271901.1 | hypothetical protein | - |
| LDX52_RS09435 (LDX52_09420) | 65894..68566 | + | 2673 | WP_267271827.1 | hypothetical protein | Relaxase |
| LDX52_RS09440 (LDX52_09425) | 69058..70347 | + | 1290 | WP_046325791.1 | hypothetical protein | - |
| LDX52_RS09445 (LDX52_09430) | 70580..71857 | + | 1278 | WP_267271905.1 | IS3 family transposase ISL6 | Transposase |
| LDX52_RS09450 (LDX52_09435) | 71994..72458 | - | 465 | WP_267271828.1 | hypothetical protein | - |
| LDX52_RS09455 (LDX52_09440) | 72738..74147 | - | 1410 | WP_046325788.1 | replication initiation protein | - |
| LDX52_RS09460 (LDX52_09445) | 76166..76549 | + | 384 | WP_046325889.1 | HU family DNA-binding protein | - |
| LDX52_RS09465 (LDX52_09450) | 76659..77261 | - | 603 | WP_267271829.1 | signal peptidase I | - |
| LDX52_RS09470 (LDX52_09455) | 77536..77976 | + | 441 | WP_267271830.1 | hypothetical protein | - |
| LDX52_RS09475 (LDX52_09460) | 78123..78425 | - | 303 | WP_046325886.1 | hypothetical protein | - |
| LDX52_RS09480 (LDX52_09465) | 78597..81680 | + | 3084 | WP_267271831.1 | MucBP domain-containing protein | - |
| LDX52_RS09485 (LDX52_09470) | 81811..82572 | + | 762 | WP_267271832.1 | hypothetical protein | - |
| LDX52_RS09490 (LDX52_09475) | 82689..83915 | + | 1227 | WP_267271833.1 | phage tail tip lysozyme | - |
| LDX52_RS09495 (LDX52_09480) | 83926..84636 | + | 711 | WP_267271834.1 | hypothetical protein | - |
| LDX52_RS09500 (LDX52_09485) | 84629..85243 | + | 615 | WP_267271835.1 | hypothetical protein | - |
| LDX52_RS09505 (LDX52_09490) | 85255..85917 | + | 663 | WP_267271836.1 | hypothetical protein | - |
| LDX52_RS09510 (LDX52_09495) | 86122..87294 | + | 1173 | WP_267271837.1 | hypothetical protein | - |
| LDX52_RS09515 (LDX52_09500) | 87378..87833 | + | 456 | WP_267271838.1 | hypothetical protein | - |
| LDX52_RS09520 (LDX52_09505) | 88684..89697 | - | 1014 | WP_267271839.1 | helveticin J family class III bacteriocin | - |
| LDX52_RS09525 (LDX52_09510) | 89840..90928 | - | 1089 | WP_267271840.1 | SLAP domain-containing protein | - |
| LDX52_RS09530 (LDX52_09515) | 91271..94429 | + | 3159 | WP_267271841.1 | TraM recognition domain-containing protein | - |
| LDX52_RS09535 (LDX52_09520) | 94435..95712 | + | 1278 | WP_267271842.1 | hypothetical protein | - |
| LDX52_RS09540 (LDX52_09525) | 95767..96492 | - | 726 | WP_267271843.1 | hypothetical protein | - |
| LDX52_RS09545 (LDX52_09530) | 96629..96931 | + | 303 | WP_046325872.1 | hypothetical protein | - |
| LDX52_RS09550 (LDX52_09535) | 97287..98090 | + | 804 | WP_267271844.1 | hypothetical protein | VF |
| LDX52_RS09555 (LDX52_09540) | 98303..98557 | + | 255 | WP_046325870.1 | hypothetical protein | - |
| LDX52_RS09560 (LDX52_09545) | 98956..99195 | - | 240 | WP_046325869.1 | hypothetical protein | - |
| LDX52_RS09565 (LDX52_09550) | 99220..99723 | - | 504 | WP_267271845.1 | hypothetical protein | - |
| LDX52_RS09570 (LDX52_09555) | 100234..100407 | + | 174 | Protein_93 | IS3 family transposase ISL6 | Transposase |
| LDX52_RS09575 (LDX52_09560) | 100447..101433 | - | 987 | WP_267271846.1 | SLAP domain-containing protein | - |
| LDX52_RS09580 (LDX52_09565) | 101787..104675 | + | 2889 | WP_267271847.1 | VaFE repeat-containing surface-anchored protein | - |
| LDX52_RS09585 (LDX52_09570) | 105562..105723 | + | 162 | WP_267271848.1 | hypothetical protein | - |
| LDX52_RS09590 (LDX52_09575) | 106007..106534 | + | 528 | WP_267271849.1 | hypothetical protein | - |
| LDX52_RS09595 (LDX52_09580) | 106572..106838 | + | 267 | WP_267271850.1 | hypothetical protein | - |
| LDX52_RS09600 (LDX52_09585) | 107244..108437 | + | 1194 | WP_267271851.1 | hypothetical protein | - |
| LDX52_RS09605 (LDX52_09590) | 108441..109511 | + | 1071 | WP_267271852.1 | hypothetical protein | - |
| LDX52_RS09610 (LDX52_09595) | 109501..110796 | + | 1296 | WP_267271853.1 | hypothetical protein | - |
| LDX52_RS09615 (LDX52_09600) | 111004..111462 | + | 459 | WP_267271854.1 | hypothetical protein | - |
| LDX52_RS09620 (LDX52_09605) | 111502..112881 | + | 1380 | WP_267271855.1 | hypothetical protein | - |
| LDX52_RS09625 (LDX52_09610) | 112878..113444 | + | 567 | WP_267271856.1 | hypothetical protein | - |
| LDX52_RS09630 (LDX52_09615) | 113668..113994 | + | 327 | WP_267271857.1 | hypothetical protein | - |
| LDX52_RS09635 (LDX52_09620) | 114032..114904 | + | 873 | WP_267271906.1 | class A sortase | - |
| LDX52_RS09640 (LDX52_09625) | 115242..116777 | + | 1536 | WP_267271858.1 | DUF3854 domain-containing protein | - |
| LDX52_RS09645 (LDX52_09630) | 116774..117025 | + | 252 | WP_267271859.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| LDX52_RS09650 (LDX52_09635) | 117022..117285 | + | 264 | WP_046325856.1 | hypothetical protein | Antitoxin Detail |
| LDX52_RS09655 (LDX52_09640) | 117365..117886 | + | 522 | WP_267271860.1 | hypothetical protein | - |
| LDX52_RS09660 (LDX52_09645) | 117900..118217 | + | 318 | WP_267271861.1 | hypothetical protein | - |
| LDX52_RS09665 (LDX52_09650) | 118232..118447 | + | 216 | WP_267271862.1 | hypothetical protein | - |
| LDX52_RS09670 (LDX52_09655) | 118474..119049 | + | 576 | WP_052724694.1 | JAB domain-containing protein | - |
| LDX52_RS09675 (LDX52_09660) | 119039..119923 | + | 885 | WP_046325852.1 | hypothetical protein | - |
| LDX52_RS09680 (LDX52_09665) | 119981..120850 | + | 870 | WP_046325851.1 | hypothetical protein | - |
| LDX52_RS09685 (LDX52_09670) | 121507..121596 | + | 90 | WP_244885273.1 | putative holin-like toxin | - |
| LDX52_RS09690 (LDX52_09675) | 122612..122854 | + | 243 | WP_046325850.1 | hypothetical protein | - |
| LDX52_RS09695 (LDX52_09680) | 123092..123511 | + | 420 | WP_052724693.1 | hypothetical protein | - |
| LDX52_RS09700 (LDX52_09685) | 123552..123956 | + | 405 | WP_046325849.1 | hypothetical protein | - |
| LDX52_RS09705 (LDX52_09690) | 123973..124266 | + | 294 | WP_046325848.1 | hypothetical protein | - |
| LDX52_RS09710 (LDX52_09695) | 124331..125410 | + | 1080 | WP_244885272.1 | hypothetical protein | - |
| LDX52_RS09715 (LDX52_09700) | 125430..127691 | + | 2262 | WP_046325847.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|