MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 68337 bp
Accession: NZ_CP084341 Location: 1..68337 Organism: Yersinia pestis strain 94 Replicon: plasmid unnamed2
Accession: NZ_CP084341 Location: 1..68337 Organism: Yersinia pestis strain 94 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDH63_RS21430 (LDH63_21405) | 502..1757 | + | 1256 | Protein_1 | SctD family type III secretion system inner membrane ring subunit YscD | - |
| LDH63_RS21435 (LDH63_21410) | 1754..1953 | + | 200 | Protein_2 | Putative Yop proteins translocation protein E | VF |
| LDH63_RS21440 (LDH63_21415) | 1954..2217 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| LDH63_RS21445 (LDH63_21420) | 2219..2565 | + | 347 | Protein_4 | Putative Yop proteins translocation protein G | VF |
| LDH63_RS21450 (LDH63_21425) | 2562..3059 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| LDH63_RS21455 (LDH63_21430) | 3060..3407 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| LDH63_RS21460 (LDH63_21435) | 3414..4148 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| LDH63_RS21465 (LDH63_21440) | 4148..4777 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| LDH63_RS21470 (LDH63_21445) | 4723..5388 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| LDH63_RS21475 (LDH63_21450) | 5613..5960 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| LDH63_RS21480 (LDH63_21455) | 6508..7537 | + | 1030 | Protein_11 | IS3 family transposase | - |
| LDH63_RS21485 (LDH63_21460) | 7556..7828 | + | 273 | Protein_12 | transposase | - |
| LDH63_RS21490 (LDH63_21465) | 8049..9455 | - | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| LDH63_RS21495 (LDH63_21470) | 9738..9971 | - | 234 | Protein_14 | transposase domain-containing protein | - |
| LDH63_RS21500 (LDH63_21475) | 9974..10552 | + | 579 | Protein_15 | IS3 family transposase ISYpe1 | Transposase |
| LDH63_RS21505 (LDH63_21480) | 10817..10921 | - | 105 | Protein_16 | GNAT family N-acetyltransferase | - |
| LDH63_RS21510 (LDH63_21485) | 11138..12004 | - | 867 | WP_002225474.1 | Effector protein YopJ | VF |
| LDH63_RS21515 (LDH63_21490) | 12400..14598 | - | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| LDH63_RS21520 (LDH63_21495) | 14606..15055 | - | 450 | WP_002229809.1 | hypothetical protein | VF |
| LDH63_RS21525 (LDH63_21500) | 15311..15620 | - | 310 | Protein_20 | IS3 family transposase ISKpn37 | Transposase |
| LDH63_RS21530 (LDH63_21505) | 15629..15807 | - | 179 | Protein_21 | IS66 family insertion sequence element accessory protein TnpB | - |
| LDH63_RS21535 (LDH63_21510) | 15801..16040 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| LDH63_RS21540 (LDH63_21515) | 17213..18091 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| LDH63_RS21545 (LDH63_21520) | 18072..18146 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| LDH63_RS21555 (LDH63_21530) | 18388..18642 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| LDH63_RS21560 (LDH63_21535) | 18780..19028 | - | 249 | Protein_26 | Phospholipase D | VF |
| LDH63_RS21565 (LDH63_21540) | 19048..19228 | - | 181 | Protein_27 | Phospholipase D | VF |
| LDH63_RS21570 (LDH63_21545) | 19154..19462 | + | 309 | Protein_28 | DDE-type integrase/transposase/recombinase | - |
| LDH63_RS21575 (LDH63_21550) | 19457..20193 | - | 737 | Protein_29 | IS3 family transposase ISKpn37 | Transposase |
| LDH63_RS21580 (LDH63_21555) | 20365..20823 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| LDH63_RS21585 (LDH63_21560) | 20892..21268 | + | 377 | Protein_31 | transposase | - |
| LDH63_RS21590 | 21226..21342 | - | 117 | WP_002213250.1 | hypothetical protein | - |
| LDH63_RS21595 (LDH63_21570) | 21487..22587 | - | 1101 | WP_231847522.1 | Adhesin YadA | VF |
| LDH63_RS21600 (LDH63_21575) | 22539..22790 | - | 252 | WP_002356450.1 | Adhesin YadA | VF |
| LDH63_RS21605 (LDH63_21580) | 23402..23734 | + | 333 | Protein_35 | IS3 family transposase IS1351 | Transposase |
| LDH63_RS21610 (LDH63_21585) | 23773..26088 | - | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| LDH63_RS21615 (LDH63_21590) | 26252..26803 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| LDH63_RS21620 (LDH63_21595) | 26822..27286 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| LDH63_RS21625 (LDH63_21600) | 27425..27754 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| LDH63_RS21630 (LDH63_21605) | 27854..28953 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| LDH63_RS21635 (LDH63_21610) | 29101..29526 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| LDH63_RS21640 (LDH63_21615) | 29903..30301 | - | 399 | Protein_42 | IS21 family transposase IS21 | Transposase |
| LDH63_RS21645 (LDH63_21620) | 30301..31473 | - | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| LDH63_RS21650 (LDH63_21625) | 31576..32220 | + | 645 | Protein_44 | IS3 family transposase ISYen3 | Transposase |
| LDH63_RS21655 (LDH63_21630) | 32283..32675 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| LDH63_RS21660 (LDH63_21635) | 32869..33528 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| LDH63_RS21665 (LDH63_21640) | 33668..33967 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LDH63_RS21670 (LDH63_21645) | 33960..34202 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| LDH63_RS21675 (LDH63_21650) | 34368..34660 | - | 293 | Protein_49 | IS6 family transposase ISEas1 | Transposase |
| LDH63_RS21680 (LDH63_21655) | 34746..34919 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| LDH63_RS21685 (LDH63_21660) | 35068..35304 | - | 237 | WP_154020274.1 | hypothetical protein | - |
| LDH63_RS21690 (LDH63_21665) | 35464..36429 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| LDH63_RS21695 (LDH63_21670) | 36426..37592 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| LDH63_RS21700 (LDH63_21675) | 38060..38273 | + | 214 | Protein_54 | IS481 family transposase | - |
| LDH63_RS21705 (LDH63_21680) | 38352..39497 | - | 1146 | Protein_55 | IS3 family transposase | - |
| LDH63_RS21710 (LDH63_21685) | 39604..40342 | - | 739 | Protein_56 | conjugal transfer complement resistance protein TraT | - |
| LDH63_RS21720 (LDH63_21695) | 40382..40672 | - | 291 | Protein_57 | IS3 family transposase | - |
| LDH63_RS21725 (LDH63_21700) | 40831..41379 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| LDH63_RS21730 (LDH63_21705) | 41879..42847 | + | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| LDH63_RS21735 (LDH63_21710) | 42847..43245 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| LDH63_RS21740 (LDH63_21715) | 43651..43932 | + | 282 | Protein_61 | DDE-type integrase/transposase/recombinase | - |
| LDH63_RS21745 (LDH63_21720) | 44019..44369 | + | 351 | WP_002393889.1 | hypothetical protein | - |
| LDH63_RS21750 (LDH63_21725) | 44897..45115 | - | 219 | Protein_63 | DDE-type integrase/transposase/recombinase | - |
| LDH63_RS21755 (LDH63_21735) | 45245..45562 | + | 318 | Protein_64 | IS256 family transposase ISSod4 | Transposase |
| LDH63_RS21760 (LDH63_21740) | 45605..46834 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| LDH63_RS21765 (LDH63_21745) | 47228..47437 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| LDH63_RS21770 (LDH63_21750) | 47458..48095 | + | 638 | Protein_67 | IS6 family transposase | - |
| LDH63_RS21775 (LDH63_21755) | 48563..49483 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| LDH63_RS21780 (LDH63_21760) | 49502..50707 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| LDH63_RS21785 (LDH63_21765) | 50685..51191 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| LDH63_RS21790 (LDH63_21770) | 51204..52184 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| LDH63_RS21795 (LDH63_21775) | 52186..52473 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| LDH63_RS21800 (LDH63_21780) | 52515..52955 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| LDH63_RS21805 (LDH63_21785) | 52952..55066 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| LDH63_RS21810 (LDH63_21790) | 55053..55397 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| LDH63_RS21815 (LDH63_21795) | 55394..55762 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| LDH63_RS21820 (LDH63_21800) | 55759..56130 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| LDH63_RS21825 (LDH63_21805) | 56117..56395 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| LDH63_RS21830 (LDH63_21810) | 56376..57257 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| LDH63_RS21835 (LDH63_21815) | 57455..58774 | + | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| LDH63_RS21840 (LDH63_21820) | 58771..59235 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| LDH63_RS21845 (LDH63_21825) | 59235..60602 | + | 1368 | WP_002212950.1 | hypothetical protein | VF |
| LDH63_RS21850 (LDH63_21830) | 60599..61522 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| LDH63_RS21855 (LDH63_21835) | 61519..62172 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| LDH63_RS21860 (LDH63_21840) | 62174..62440 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| LDH63_RS21865 (LDH63_21845) | 62437..63222 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| LDH63_RS21870 (LDH63_21850) | 63222..64286 | + | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| LDH63_RS21875 (LDH63_21855) | 64862..65257 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| LDH63_RS21880 (LDH63_21860) | 65381..66196 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| LDH63_RS21885 (LDH63_21865) | 66275..66373 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| LDH63_RS21890 (LDH63_21870) | 66599..67012 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|