MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 68335 bp
Accession: NZ_CP084338 Location: 1..68335 Organism: Yersinia pestis strain R Replicon: plasmid unnamed2
Accession: NZ_CP084338 Location: 1..68335 Organism: Yersinia pestis strain R Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDH64_RS21600 (LDH64_21580) | 125..581 | - | 457 | Protein_0 | conjugal transfer protein TraI | - |
| LDH64_RS21605 (LDH64_21585) | 650..1026 | + | 377 | Protein_1 | transposase | - |
| LDH64_RS21610 (LDH64_21590) | 984..1100 | - | 117 | WP_002213250.1 | hypothetical protein | - |
| LDH64_RS22120 | 1234..1629 | - | 396 | WP_284438439.1 | Adhesin YadA | VF |
| LDH64_RS21620 (LDH64_21600) | 1686..2546 | - | 861 | WP_256516945.1 | Adhesin YadA | VF |
| LDH64_RS21625 (LDH64_21605) | 3156..3487 | + | 332 | Protein_5 | IS3 family transposase IS1351 | Transposase |
| LDH64_RS21630 | 3527..3718 | - | 192 | WP_080093990.1 | Tn3 family transposase ISEc63 | Transposase |
| LDH64_RS21635 | 3747..3881 | - | 135 | WP_256516962.1 | Tn3 family transposase ISEc63 | Transposase |
| LDH64_RS21640 | 3916..4344 | - | 429 | WP_256516964.1 | Tn3 family transposase ISEc63 | Transposase |
| LDH64_RS21645 | 4272..4514 | - | 243 | WP_256516966.1 | Tn3 family transposase | - |
| LDH64_RS21650 | 4528..4785 | - | 258 | WP_256516946.1 | Tn3 family transposase | - |
| LDH64_RS21655 (LDH64_21615) | 4788..5120 | - | 333 | WP_256516947.1 | Tn3 family transposase ISEc63 | Transposase |
| LDH64_RS21660 (LDH64_21620) | 5117..5842 | - | 726 | WP_256516948.1 | Tn3 family transposase ISEc63 | Transposase |
| LDH64_RS21665 (LDH64_21625) | 6006..6557 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| LDH64_RS21670 (LDH64_21630) | 6576..7040 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| LDH64_RS21675 (LDH64_21635) | 7179..7508 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| LDH64_RS21680 (LDH64_21640) | 7608..8707 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| LDH64_RS21685 (LDH64_21645) | 8855..9280 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| LDH64_RS21690 (LDH64_21650) | 9657..10055 | - | 399 | Protein_18 | IS21 family transposase IS21 | Transposase |
| LDH64_RS21695 (LDH64_21655) | 10055..11227 | - | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| LDH64_RS21700 (LDH64_21660) | 11330..11974 | + | 645 | Protein_20 | IS3 family transposase ISYen3 | Transposase |
| LDH64_RS21705 (LDH64_21665) | 12037..12429 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| LDH64_RS21710 (LDH64_21670) | 12623..13282 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| LDH64_RS21715 (LDH64_21675) | 13422..13721 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LDH64_RS21720 (LDH64_21680) | 13714..13956 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| LDH64_RS21725 (LDH64_21685) | 14122..14414 | - | 293 | Protein_25 | IS6 family transposase ISEas1 | Transposase |
| LDH64_RS21730 (LDH64_21690) | 14500..14673 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| LDH64_RS21735 (LDH64_21695) | 14822..15058 | - | 237 | WP_154020274.1 | hypothetical protein | - |
| LDH64_RS21740 (LDH64_21700) | 15218..16183 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| LDH64_RS21745 (LDH64_21705) | 16180..17346 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| LDH64_RS21750 (LDH64_21710) | 17814..18027 | + | 214 | Protein_30 | IS481 family transposase | - |
| LDH64_RS21755 (LDH64_21715) | 18106..19251 | - | 1146 | Protein_31 | IS3 family transposase | - |
| LDH64_RS21760 (LDH64_21720) | 19358..20096 | - | 739 | Protein_32 | conjugal transfer complement resistance protein TraT | - |
| LDH64_RS21770 (LDH64_21730) | 20136..20426 | - | 291 | Protein_33 | IS3 family transposase | - |
| LDH64_RS21775 (LDH64_21735) | 20585..21133 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| LDH64_RS21780 (LDH64_21740) | 21633..22601 | + | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| LDH64_RS21785 (LDH64_21745) | 22601..22999 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| LDH64_RS21790 (LDH64_21750) | 23405..23686 | + | 282 | Protein_37 | DDE-type integrase/transposase/recombinase | - |
| LDH64_RS21795 (LDH64_21755) | 23773..24123 | + | 351 | WP_002393889.1 | hypothetical protein | - |
| LDH64_RS21800 (LDH64_21760) | 24651..24869 | - | 219 | Protein_39 | DDE-type integrase/transposase/recombinase | - |
| LDH64_RS21805 (LDH64_21770) | 24999..25316 | + | 318 | Protein_40 | IS256 family transposase ISSod4 | Transposase |
| LDH64_RS21810 (LDH64_21775) | 25359..26588 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| LDH64_RS21815 (LDH64_21780) | 26982..27191 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| LDH64_RS21820 (LDH64_21785) | 27212..27849 | + | 638 | Protein_43 | IS6 family transposase | - |
| LDH64_RS21825 (LDH64_21790) | 28317..29237 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| LDH64_RS21830 (LDH64_21795) | 29256..30461 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| LDH64_RS21835 (LDH64_21800) | 30439..30945 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| LDH64_RS21840 (LDH64_21805) | 30958..31938 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| LDH64_RS21845 (LDH64_21810) | 31940..32227 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| LDH64_RS21850 (LDH64_21815) | 32269..32709 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| LDH64_RS21855 (LDH64_21820) | 32706..34820 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| LDH64_RS21860 (LDH64_21825) | 34807..35151 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| LDH64_RS21865 (LDH64_21830) | 35148..35516 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| LDH64_RS21870 (LDH64_21835) | 35513..35884 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| LDH64_RS21875 (LDH64_21840) | 35871..36149 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| LDH64_RS21880 (LDH64_21845) | 36130..37011 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| LDH64_RS21885 (LDH64_21850) | 37209..38528 | + | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| LDH64_RS21890 (LDH64_21855) | 38525..38989 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| LDH64_RS21895 (LDH64_21860) | 38989..40356 | + | 1368 | WP_002212950.1 | hypothetical protein | VF |
| LDH64_RS21900 (LDH64_21865) | 40353..41276 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| LDH64_RS21905 (LDH64_21870) | 41273..41926 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| LDH64_RS21910 (LDH64_21875) | 41928..42194 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| LDH64_RS21915 (LDH64_21880) | 42191..42976 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| LDH64_RS21920 (LDH64_21885) | 42976..44040 | + | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| LDH64_RS21925 (LDH64_21890) | 44616..45011 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| LDH64_RS21930 (LDH64_21895) | 45135..45950 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| LDH64_RS21935 (LDH64_21900) | 46029..46127 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| LDH64_RS21940 (LDH64_21905) | 46353..46766 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| LDH64_RS21945 (LDH64_21910) | 46772..48595 | + | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| LDH64_RS21950 (LDH64_21915) | 48592..49851 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| LDH64_RS21955 (LDH64_21920) | 49848..50048 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| LDH64_RS21960 (LDH64_21925) | 50049..50312 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| LDH64_RS21965 (LDH64_21930) | 50314..50661 | + | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| LDH64_RS21970 (LDH64_21935) | 50658..51155 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| LDH64_RS21975 (LDH64_21940) | 51156..51503 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| LDH64_RS21980 (LDH64_21945) | 51510..52244 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| LDH64_RS21985 (LDH64_21950) | 52244..52873 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| LDH64_RS21990 (LDH64_21955) | 52819..53484 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| LDH64_RS21995 (LDH64_21960) | 53709..54056 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| LDH64_RS22000 (LDH64_21965) | 54604..55633 | + | 1030 | Protein_79 | IS3 family transposase | - |
| LDH64_RS22005 (LDH64_21970) | 55652..55924 | + | 273 | Protein_80 | transposase | - |
| LDH64_RS22010 (LDH64_21975) | 56145..57551 | - | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| LDH64_RS22015 (LDH64_21980) | 57834..58067 | - | 234 | Protein_82 | transposase domain-containing protein | - |
| LDH64_RS22020 (LDH64_21985) | 58070..58648 | + | 579 | Protein_83 | IS3 family transposase ISYpe1 | Transposase |
| LDH64_RS22025 (LDH64_21990) | 58913..59017 | - | 105 | Protein_84 | GNAT family N-acetyltransferase | - |
| LDH64_RS22030 (LDH64_21995) | 59234..60100 | - | 867 | WP_002225474.1 | Effector protein YopJ | VF |
| LDH64_RS22035 (LDH64_22000) | 60496..62694 | - | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| LDH64_RS22040 (LDH64_22005) | 62702..63151 | - | 450 | WP_002229809.1 | hypothetical protein | VF |
| LDH64_RS22045 (LDH64_22010) | 63407..63716 | - | 310 | Protein_88 | IS3 family transposase ISKpn37 | Transposase |
| LDH64_RS22050 (LDH64_22015) | 63725..63903 | - | 179 | Protein_89 | IS66 family insertion sequence element accessory protein TnpB | - |
| LDH64_RS22055 (LDH64_22020) | 63897..64136 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| LDH64_RS22060 (LDH64_22025) | 65309..66187 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| LDH64_RS22065 (LDH64_22030) | 66168..66242 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| LDH64_RS22075 (LDH64_22040) | 66484..66738 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| LDH64_RS22080 (LDH64_22045) | 66876..67124 | - | 249 | Protein_94 | Phospholipase D | VF |
| LDH64_RS22085 (LDH64_22050) | 67144..67324 | - | 181 | Protein_95 | Phospholipase D | VF |
| LDH64_RS22090 (LDH64_22055) | 67250..67558 | + | 309 | Protein_96 | DDE-type integrase/transposase/recombinase | - |
| LDH64_RS22095 (LDH64_22060) | 67553..68289 | - | 737 | Protein_97 | IS3 family transposase ISKpn37 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|