MGE detailed information
MGE type: Conjugative plasmid MGE length: 65095 bp
Accession: NZ_CP084278 Location: 1..65095 Organism: Caballeronia grimmiae strain Lep1A1 Replicon: plasmid p5
Accession: NZ_CP084278 Location: 1..65095 Organism: Caballeronia grimmiae strain Lep1A1 Replicon: plasmid p5
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDZ21_RS30820 | 197..2755 | - | 2559 | WP_011114047.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| LDZ21_RS30825 | 2752..3063 | - | 312 | WP_001207961.1 | conjugal transfer protein TrbD | - |
| LDZ21_RS30830 | 3067..3531 | - | 465 | WP_011114046.1 | conjugal transfer system pilin TrbC | - |
| LDZ21_RS30835 | 3548..4510 | - | 963 | WP_000132020.1 | Type IV secretion system protein PtlH | VF |
| LDZ21_RS30840 | 4820..5182 | - | 363 | WP_011114045.1 | transcriptional regulator | - |
| LDZ21_RS30845 | 5296..5637 | + | 342 | WP_000019167.1 | single-stranded DNA-binding protein | - |
| LDZ21_RS30850 | 5684..6904 | + | 1221 | WP_011114072.1 | plasmid replication initiator TrfA | - |
| LDZ21_RS30855 | 7017..7451 | - | 435 | WP_003131969.1 | mercury resistance transcriptional regulator MerR | - |
| LDZ21_RS30860 | 7523..7873 | + | 351 | WP_003131974.1 | mercuric ion transporter MerT | - |
| LDZ21_RS30865 | 7886..8161 | + | 276 | WP_003131987.1 | mercury resistance system periplasmic binding protein MerP | - |
| LDZ21_RS30870 | 8233..9918 | + | 1686 | WP_003158917.1 | mercury(II) reductase | - |
| LDZ21_RS30875 | 9936..10301 | + | 366 | WP_000995360.1 | mercury resistance co-regulator MerD | - |
| LDZ21_RS30880 | 10298..10534 | + | 237 | WP_003132004.1 | broad-spectrum mercury transporter MerE | - |
| LDZ21_RS30885 | 10531..11064 | + | 534 | Protein_14 | putative signaling protein | VF |
| LDZ21_RS30890 | 11211..14126 | + | 2916 | WP_003049965.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| LDZ21_RS30895 | 14270..14863 | + | 594 | Protein_16 | FAD-dependent oxidoreductase | - |
| LDZ21_RS30900 | 14972..16519 | + | 1548 | WP_011117152.1 | IS91 family transposase ISPps1 | Transposase |
| LDZ21_RS30905 | 16839..17318 | + | 480 | WP_232476759.1 | Periplasmic zinc-binding protein TroA | VF |
| LDZ21_RS30910 | 17469..18782 | + | 1314 | WP_087748615.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| LDZ21_RS30915 | 19334..20047 | + | 714 | WP_087748614.1 | ABC transporter substrate-binding protein | - |
| LDZ21_RS30920 | 19975..21342 | + | 1368 | Protein_21 | IS91 family transposase ISPps1 | Transposase |
| LDZ21_RS30925 | 21684..22559 | + | 876 | WP_047748381.1 | EamA family transporter | - |
| LDZ21_RS30930 | 22768..23946 | + | 1179 | WP_047748382.1 | acetate/propionate family kinase | - |
| LDZ21_RS30935 | 24155..25507 | + | 1353 | WP_186437271.1 | Cardiolipin synthase C | VF |
| LDZ21_RS30940 | 25748..27073 | - | 1326 | WP_047748383.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| LDZ21_RS30945 | 27149..29353 | - | 2205 | WP_047748384.1 | putative signaling protein | VF |
| LDZ21_RS30950 | 29430..30092 | + | 663 | Protein_27 | Tn3 family transposase TnpA_IS1071 | Transposase |
| LDZ21_RS30955 | 31214..31495 | - | 282 | WP_011114071.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| LDZ21_RS30960 | 31482..31745 | - | 264 | WP_011114070.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LDZ21_RS30965 | 31918..32346 | + | 429 | WP_011114069.1 | antirestriction protein | - |
| LDZ21_RS30970 | 32391..32609 | + | 219 | WP_012478187.1 | hypothetical protein | - |
| LDZ21_RS30975 | 32621..33829 | + | 1209 | WP_011114068.1 | hypothetical protein | - |
| LDZ21_RS30980 | 33846..34103 | + | 258 | WP_011114067.1 | transcriptional repressor KorC | - |
| LDZ21_RS30985 | 34261..34497 | + | 237 | WP_011114066.1 | stable inheritance protein KleA | - |
| LDZ21_RS30990 | 34706..35032 | + | 327 | WP_011114065.1 | KleE stable inheritance protein | - |
| LDZ21_RS30995 | 35034..35363 | + | 330 | WP_011114064.1 | DUF2761 domain-containing protein | - |
| LDZ21_RS31000 | 35470..35778 | + | 309 | WP_011114062.1 | transcriptional regulator KorA | - |
| LDZ21_RS31005 | 35775..36539 | + | 765 | WP_011114061.1 | ParA family protein | - |
| LDZ21_RS31010 | 36536..37585 | + | 1050 | WP_011114060.1 | ParB/RepB/Spo0J family partition protein | - |
| LDZ21_RS31015 | 37764..38795 | + | 1032 | WP_011114059.1 | DNA-binding protein | - |
| LDZ21_RS31020 | 38966..39313 | + | 348 | WP_000664557.1 | hypothetical protein | - |
| LDZ21_RS31025 | 39342..39995 | + | 654 | WP_000826922.1 | hypothetical protein | - |
| LDZ21_RS31030 | 40198..40638 | - | 441 | WP_000718516.1 | conjugal transfer protein TraM | - |
| LDZ21_RS31035 | 40638..41363 | - | 726 | WP_011114058.1 | AAA family ATPase | - |
| LDZ21_RS31040 | 41363..41761 | - | 399 | WP_001127128.1 | TraK family protein | - |
| LDZ21_RS31045 | 42135..42509 | + | 375 | WP_000426567.1 | conjugal transfer transcriptional regulator TraJ | - |
| LDZ21_RS31050 | 42544..44784 | + | 2241 | WP_011114057.1 | Protein TraI | Relaxase |
| LDZ21_RS31055 | 44781..46694 | + | 1914 | WP_000694765.1 | Conjugal transfer protein TraG | VF |
| LDZ21_RS31060 | 46691..47227 | + | 537 | WP_006122512.1 | conjugative transfer signal peptidase TraF | - |
| LDZ21_RS31065 | 47239..49302 | + | 2064 | WP_011114056.1 | DNA topoisomerase III | - |
| LDZ21_RS31070 | 49324..49713 | + | 390 | WP_006122510.1 | protein TraD | - |
| LDZ21_RS31075 | 49717..54063 | + | 4347 | WP_011114055.1 | zincin-like metallopeptidase domain-containing protein | - |
| LDZ21_RS31080 | 54552..55403 | + | 852 | WP_011296189.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LDZ21_RS31085 | 55405..56079 | - | 675 | WP_011178411.1 | DNA methylase | - |
| LDZ21_RS31090 | 56234..56665 | - | 432 | WP_001665065.1 | Type IV secretion system putative outer membrane lipoprotein/BS1330_II0058 | VF |
| LDZ21_RS31095 | 56681..57379 | - | 699 | WP_011114053.1 | TraX family protein | - |
| LDZ21_RS31100 | 57379..57645 | - | 267 | WP_010890140.1 | hypothetical protein | - |
| LDZ21_RS31105 | 57674..58309 | - | 636 | WP_011114052.1 | hypothetical protein | VF |
| LDZ21_RS31110 | 58323..58910 | - | 588 | WP_010890138.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| LDZ21_RS31115 | 58928..60646 | - | 1719 | WP_011114051.1 | P-type conjugative transfer protein TrbL | - |
| LDZ21_RS31120 | 60657..60884 | - | 228 | WP_000644148.1 | entry exclusion lipoprotein TrbK | - |
| LDZ21_RS31125 | 60894..61658 | - | 765 | WP_010890135.1 | P-type conjugative transfer protein TrbJ | - |
| LDZ21_RS31130 | 61679..63100 | - | 1422 | WP_011114050.1 | Type IV secretion system protein virB10 | VF |
| LDZ21_RS31135 | 63105..63593 | - | 489 | WP_006122479.1 | conjugal transfer protein TrbH | - |
| LDZ21_RS31140 | 63596..64495 | - | 900 | WP_006122480.1 | P-type conjugative transfer protein TrbG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|