MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 74900 bp
Accession: NZ_CP084254 Location: 1..74900 Organism: Caballeronia sp. Sq4a Replicon: plasmid p2
Accession: NZ_CP084254 Location: 1..74900 Organism: Caballeronia sp. Sq4a Replicon: plasmid p2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDZ24_RS27580 | 250..858 | + | 609 | WP_248324878.1 | hypothetical protein | - |
| LDZ24_RS27585 | 851..2962 | + | 2112 | WP_248324880.1 | IS91 family transposase ISMno23 | Transposase |
| LDZ24_RS27590 | 3045..3257 | + | 213 | WP_248324881.1 | hypothetical protein | - |
| LDZ24_RS27595 | 3465..4643 | + | 1179 | WP_248324883.1 | XRE family transcriptional regulator | - |
| LDZ24_RS27600 | 4640..5164 | + | 525 | WP_248324885.1 | DUF4411 family protein | - |
| LDZ24_RS27605 | 5529..6107 | + | 579 | WP_248324887.1 | zinc ribbon domain-containing protein | - |
| LDZ24_RS27610 | 6267..7697 | + | 1431 | WP_248324889.1 | ATP-binding protein | - |
| LDZ24_RS27615 | 8774..9979 | - | 1206 | WP_248324891.1 | GAF domain-containing sensor histidine kinase | - |
| LDZ24_RS27620 | 10203..10432 | + | 230 | Protein_8 | integrase | - |
| LDZ24_RS27625 | 10498..11265 | - | 768 | WP_248324924.1 | IS21 family transposase ISCARN17 | Transposase |
| LDZ24_RS27630 | 11268..12844 | - | 1577 | Protein_10 | IS21 family transposase | - |
| LDZ24_RS27635 | 13126..14649 | + | 1524 | WP_087129150.1 | IS21 family transposase ISCARN16 | Transposase |
| LDZ24_RS27640 | 14642..15442 | + | 801 | WP_248324893.1 | IS21 family transposase ISCARN16 | Transposase |
| LDZ24_RS27645 | 15763..15915 | - | 153 | WP_248324894.1 | hypothetical protein | - |
| LDZ24_RS27650 | 15947..16123 | - | 177 | WP_248324896.1 | hypothetical protein | - |
| LDZ24_RS27655 | 16140..16541 | - | 402 | WP_248324898.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LDZ24_RS27660 | 16541..16777 | - | 237 | WP_248324899.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LDZ24_RS27665 | 17339..17511 | + | 173 | Protein_17 | DUF4148 domain-containing protein | - |
| LDZ24_RS27670 | 17636..18873 | + | 1238 | WP_248324902.1 | IS3 family transposase IS1416 | Transposase |
| LDZ24_RS27675 | 19311..21365 | - | 2055 | WP_248324904.1 | response regulator | - |
| LDZ24_RS27680 | 21373..22872 | - | 1500 | WP_248324906.1 | ATPase domain-containing protein | - |
| LDZ24_RS27685 | 22862..23224 | - | 363 | WP_248324908.1 | HigA family addiction module antitoxin | - |
| LDZ24_RS27690 | 23705..24454 | - | 750 | WP_248324910.1 | transglutaminase family protein | - |
| LDZ24_RS27695 | 24812..25051 | - | 240 | WP_014253392.1 | hypothetical protein | - |
| LDZ24_RS27700 | 25334..25549 | - | 216 | WP_035970473.1 | hypothetical protein | - |
| LDZ24_RS27705 | 25518..25928 | - | 411 | WP_248324912.1 | hypothetical protein | - |
| LDZ24_RS27710 | 26254..26496 | + | 243 | WP_248324914.1 | hypothetical protein | - |
| LDZ24_RS27715 | 26865..27614 | + | 750 | WP_248324926.1 | trypsin-like peptidase domain-containing protein | - |
| LDZ24_RS27720 | 28237..28434 | - | 198 | WP_033537232.1 | hypothetical protein | - |
| LDZ24_RS27725 | 28632..28787 | - | 156 | WP_160297420.1 | hypothetical protein | - |
| LDZ24_RS27730 | 29526..29729 | - | 204 | WP_008345092.1 | cold-shock protein | - |
| LDZ24_RS27735 | 31224..31652 | - | 429 | Protein_31 | IS3 family transposase ISBj3 | Transposase |
| LDZ24_RS27740 | 31902..32770 | + | 869 | Protein_32 | manganese catalase family protein | - |
| LDZ24_RS27745 | 33046..33201 | + | 156 | WP_248324916.1 | hypothetical protein | - |
| LDZ24_RS27750 | 33445..33783 | + | 339 | WP_087129147.1 | hypothetical protein | - |
| LDZ24_RS27755 | 34202..35322 | + | 1121 | WP_248324918.1 | IS3 family transposase ISDba1 | Transposase |
| LDZ24_RS27760 | 35753..36316 | + | 564 | Protein_36 | IS5 family transposase ISRso9 | Transposase |
| LDZ24_RS27765 | 36441..36803 | + | 363 | WP_248324920.1 | IS3 family transposase ISAcma13 | Transposase |
| LDZ24_RS27770 | 36800..37600 | + | 801 | WP_248324922.1 | IS3 family transposase ISMco1 | Transposase |
| LDZ24_RS27775 | 37672..37833 | + | 162 | Protein_39 | alpha,alpha-trehalose-phosphate synthase | - |
| LDZ24_RS27780 | 38004..38204 | + | 201 | WP_248324831.1 | DUF2934 domain-containing protein | - |
| LDZ24_RS27785 | 38236..38484 | + | 249 | WP_248324832.1 | hypothetical protein | - |
| LDZ24_RS27790 | 38737..39153 | + | 417 | WP_248324834.1 | Response regulator MprA | VF |
| LDZ24_RS27795 | 39352..40227 | - | 876 | WP_248324836.1 | manganese catalase family protein | - |
| LDZ24_RS27800 | 40500..40649 | - | 150 | WP_248324838.1 | hypothetical protein | - |
| LDZ24_RS27805 | 40711..41613 | - | 903 | WP_248324840.1 | YsnF/AvaK domain-containing protein | - |
| LDZ24_RS27810 | 41681..42142 | - | 462 | WP_248324842.1 | YsnF/AvaK domain-containing protein | - |
| LDZ24_RS27815 | 42176..42892 | - | 717 | WP_248324844.1 | hypothetical protein | - |
| LDZ24_RS27820 | 43284..43850 | - | 567 | WP_143754727.1 | TIGR01841 family phasin | - |
| LDZ24_RS27825 | 44113..45153 | - | 1041 | WP_248324846.1 | PHB depolymerase family esterase | - |
| LDZ24_RS27830 | 46164..46346 | + | 183 | Protein_50 | ATP-binding protein | - |
| LDZ24_RS27835 | 47742..48014 | + | 273 | WP_248324848.1 | hypothetical protein | - |
| LDZ24_RS27840 | 48792..49058 | + | 267 | WP_248324850.1 | hypothetical protein | - |
| LDZ24_RS27845 | 49703..50908 | - | 1206 | Protein_53 | fatty acid desaturase | - |
| LDZ24_RS27850 | 51353..51739 | - | 387 | WP_087128447.1 | hypothetical protein | - |
| LDZ24_RS27855 | 51817..52083 | - | 267 | WP_143754646.1 | hypothetical protein | - |
| LDZ24_RS27860 | 52167..52571 | - | 405 | WP_087128633.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| LDZ24_RS27865 | 53350..54445 | - | 1096 | Protein_57 | IS3 family transposase ISNeu4 | Transposase |
| LDZ24_RS27870 | 54497..55443 | + | 947 | Protein_58 | IS3 family transposase ISMex33 | Transposase |
| LDZ24_RS27875 | 55513..56151 | + | 639 | Protein_59 | IS30 family transposase ISPa37 | Transposase |
| LDZ24_RS27880 | 57958..58218 | + | 261 | WP_248324852.1 | hypothetical protein | - |
| LDZ24_RS27885 | 58342..58689 | - | 348 | WP_248324854.1 | transcriptional regulator | - |
| LDZ24_RS27890 | 58686..58972 | - | 287 | Protein_62 | DUF6516 family protein | - |
| LDZ24_RS27895 | 60067..61301 | + | 1235 | WP_248324856.1 | IS3 family transposase ISButh1 | Transposase |
| LDZ24_RS27900 | 62149..62292 | + | 144 | Protein_64 | transcriptional regulator | - |
| LDZ24_RS27905 | 62740..62910 | + | 171 | WP_256465448.1 | Rv2175c family DNA-binding protein | - |
| LDZ24_RS27910 | 63372..63779 | + | 408 | WP_248324858.1 | hypothetical protein | - |
| LDZ24_RS27915 | 64008..64451 | - | 444 | WP_248324860.1 | ribbon-helix-helix domain-containing protein | - |
| LDZ24_RS27920 | 65019..65426 | + | 408 | WP_248324862.1 | hypothetical protein | - |
| LDZ24_RS27925 | 65438..66208 | + | 771 | WP_248324864.1 | hypothetical protein | - |
| LDZ24_RS27930 | 66853..67230 | - | 378 | WP_248324866.1 | hypothetical protein | - |
| LDZ24_RS27935 | 67292..67573 | + | 282 | WP_248324868.1 | helix-turn-helix transcriptional regulator | - |
| LDZ24_RS27940 | 68530..69507 | - | 978 | WP_248324870.1 | plasmid replication initiator TrfA | - |
| LDZ24_RS27945 | 69592..70758 | + | 1167 | WP_248324872.1 | AAA family ATPase | - |
| LDZ24_RS27950 | 70771..71730 | + | 960 | WP_248324874.1 | ParB/RepB/Spo0J family partition protein | - |
| LDZ24_RS27955 | 71788..72157 | - | 370 | Protein_75 | integrase core domain-containing protein | - |
| LDZ24_RS27960 | 72187..73773 | - | 1587 | WP_248324876.1 | ISNCY family transposase ISBj12 | Transposase |
| LDZ24_RS27965 | 73873..74012 | - | 140 | Protein_77 | IS3 family transposase IS1087B | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|