MGE detailed information
MGE type: Prophage MGE length: 41190 bp
Accession: NZ_CP084216 Location: 1933531..1974720 Organism: Salmonella sp. JXY0409-18 Replicon: chromosome
Accession: NZ_CP084216 Location: 1933531..1974720 Organism: Salmonella sp. JXY0409-18 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB27_RS09175 () | 1929804..1930445 | + | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LDB27_RS09180 () | 1930545..1931723 | - | 1179 | WP_000173436.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LDB27_RS09185 () | 1931854..1932144 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| LDB27_RS09190 () | 1932212..1932565 | + | 354 | WP_001042123.1 | protein YebF | - |
| LDB27_RS09195 () | 1932659..1933318 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| LDB27_RS09200 () | 1933531..1935582 | + | 2052 | WP_000936990.1 | oligopeptidase B | - |
| LDB27_RS09205 () | 1935619..1936317 | - | 699 | WP_000944280.1 | exodeoxyribonuclease X | - |
| LDB27_RS09210 () | 1936341..1936997 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| LDB27_RS09215 () | 1937105..1937335 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LDB27_RS09220 () | 1937473..1937847 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LDB27_RS09225 () | 1937848..1938723 | + | 876 | WP_000979695.1 | copper homeostasis membrane protein CopD | - |
| LDB27_RS09230 () | 1938740..1939093 | + | 354 | WP_225519938.1 | YebY family protein | - |
| - | 1939196..1939339 | - | 144 | - | - | Antitoxin Detail |
| - | 1939234..1939337 | + | 104 | - | - | Toxin Detail |
| LDB27_RS09235 () | 1939477..1940556 | - | 1080 | WP_022742740.1 | hypothetical protein ; Integrase | Integrase |
| LDB27_RS09240 () | 1940531..1940809 | - | 279 | WP_001575998.1 | excisionase | - |
| LDB27_RS09245 () | 1940870..1941298 | - | 429 | WP_057519946.1 | hypothetical protein | - |
| LDB27_RS09250 () | 1941397..1941582 | - | 186 | WP_000280163.1 | DUF1187 family protein | - |
| LDB27_RS09255 () | 1941629..1942459 | - | 831 | WP_079813120.1 | recombination protein RecT | - |
| LDB27_RS09260 () | 1942452..1943903 | - | 1452 | Protein_1806 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| LDB27_RS09265 () | 1944051..1944299 | + | 249 | Protein_1807 | glycoside hydrolase family 19 protein | - |
| LDB27_RS09270 () | 1944296..1944828 | + | 533 | Protein_1808 | DUF2514 domain-containing protein | - |
| LDB27_RS09275 () | 1945085..1945252 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| LDB27_RS09280 () | 1945555..1946046 | + | 492 | WP_000348547.1 | DUF1441 family protein | - |
| LDB27_RS09285 () | 1946033..1946600 | + | 568 | Protein_1811 | phage terminase large subunit family protein | - |
| LDB27_RS09290 () | 1946641..1947579 | + | 939 | Protein_1812 | tail fiber protein | - |
| LDB27_RS23830 () | 1947580..1947927 | + | 348 | Protein_1813 | tail assembly chaperone | - |
| LDB27_RS09295 () | 1948024..1948224 | - | 201 | WP_031615635.1 | PagK family vesicle-borne virulence factor | - |
| LDB27_RS09300 () | 1948614..1948794 | - | 181 | Protein_1815 | IS3 family transposase | - |
| LDB27_RS09305 () | 1948785..1948886 | + | 102 | Protein_1816 | arsenic transporter | - |
| LDB27_RS09310 () | 1949508..1949740 | + | 233 | Protein_1817 | helix-turn-helix domain-containing protein | - |
| LDB27_RS09315 () | 1950067..1950681 | - | 615 | WP_000848064.1 | disulfide bond formation protein B | - |
| LDB27_RS09320 () | 1950691..1950849 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| LDB27_RS09325 () | 1950982..1951896 | - | 915 | WP_046380654.1 | DMT family transporter | - |
| LDB27_RS09330 () | 1952687..1953250 | - | 564 | Protein_1821 | fimbrial protein | - |
| LDB27_RS09335 () | 1953402..1953754 | + | 353 | Protein_1822 | IS256 family transposase ISEc39 | Transposase |
| LDB27_RS09340 () | 1953900..1954040 | - | 141 | WP_001604859.1 | hypothetical protein | - |
| LDB27_RS09345 () | 1954206..1954475 | - | 270 | WP_077906414.1 | hypothetical protein | - |
| LDB27_RS09350 () | 1954515..1954715 | + | 201 | WP_000007801.1 | hypothetical protein | - |
| LDB27_RS09355 () | 1954844..1955263 | + | 420 | WP_000354406.1 | GNAT family N-acetyltransferase | - |
| LDB27_RS09360 () | 1955651..1956127 | - | 477 | WP_225519939.1 | hypothetical protein | - |
| LDB27_RS09365 () | 1956455..1956850 | - | 396 | WP_000422883.1 | DUF1398 domain-containing protein | - |
| LDB27_RS09370 () | 1957534..1958256 | + | 723 | WP_000182069.1 | Guanine nucleotide exchange factor sopE2 | VF |
| LDB27_RS09375 () | 1958541..1958705 | + | 165 | WP_001134850.1 | hypothetical protein | - |
| LDB27_RS09380 () | 1958930..1959580 | + | 651 | WP_000986166.1 | protein-serine/threonine phosphatase | - |
| LDB27_RS09385 () | 1959599..1959790 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| LDB27_RS09390 () | 1959901..1960137 | - | 237 | WP_024131167.1 | YebV family protein | - |
| LDB27_RS09395 () | 1960254..1961693 | - | 1440 | WP_001530936.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LDB27_RS09400 () | 1961771..1964404 | - | 2634 | WP_001530909.1 | hypothetical protein | VF |
| LDB27_RS09405 () | 1964373..1965656 | - | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| LDB27_RS09410 () | 1965785..1966282 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| LDB27_RS09415 () | 1966380..1967066 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| LDB27_RS09420 () | 1967086..1969134 | + | 2049 | WP_225519940.1 | carboxy terminal-processing peptidase | - |
| LDB27_RS09425 () | 1969327..1970208 | + | 882 | WP_000984498.1 | protease HtpX | - |
| LDB27_RS09430 () | 1970256..1971629 | - | 1374 | WP_000416144.1 | MFS transporter | - |
| LDB27_RS09435 () | 1971805..1972596 | + | 792 | WP_225519941.1 | DNA-binding transcriptional regulator KdgR | - |
| LDB27_RS09440 () | 1972808..1973047 | - | 240 | WP_001236778.1 | invasion protein YobH | - |
| LDB27_RS09445 () | 1973205..1973348 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| LDB27_RS09450 () | 1973419..1973706 | + | 288 | WP_001000660.1 | YebO family protein | - |
| LDB27_RS09455 () | 1974355..1974498 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| LDB27_RS09460 () | 1974511..1974720 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LDB27_RS09465 () | 1974940..1976685 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| LDB27_RS09470 () | 1976751..1977560 | + | 810 | WP_000010916.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LDB27_RS09475 () | 1977557..1978123 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| LDB27_RS09480 () | 1978533..1978991 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|