MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 54338 bp
Accession: NZ_CP084215 Location: 1..54338 Organism: Pseudomonas amygdali strain 35-1 Replicon: plasmid p3
Accession: NZ_CP084215 Location: 1..54338 Organism: Pseudomonas amygdali strain 35-1 Replicon: plasmid p3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCH33_RS29440 (LCH33_005861) | 1..1314 | + | 1314 | WP_054987846.1 | replication initiation protein | - |
| LCH33_RS29445 (LCH33_005862) | 1540..1827 | + | 288 | WP_044311061.1 | HU family DNA-binding protein | - |
| LCH33_RS29450 (LCH33_005863) | 2067..2765 | + | 699 | WP_054987847.1 | GNAT family N-acetyltransferase | - |
| LCH33_RS29455 (LCH33_005864) | 3517..4098 | + | 582 | WP_005734896.1 | hypothetical protein | - |
| LCH33_RS29460 (LCH33_005865) | 4101..5015 | + | 915 | WP_054071525.1 | DUF4868 domain-containing protein | - |
| LCH33_RS29465 (LCH33_005866) | 5076..6005 | - | 930 | WP_054987848.1 | DUF4928 family protein | - |
| LCH33_RS29470 (LCH33_005867) | 6005..7153 | - | 1149 | WP_225231728.1 | DNA cytosine methyltransferase | - |
| LCH33_RS29475 (LCH33_005868) | 7580..7942 | + | 363 | WP_007247606.1 | hypothetical protein | - |
| LCH33_RS29480 (LCH33_005869) | 7945..8172 | + | 228 | WP_004642455.1 | hypothetical protein | - |
| LCH33_RS29485 (LCH33_005870) | 8248..8880 | - | 633 | WP_054987853.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LCH33_RS29490 (LCH33_005871) | 8987..9244 | + | 258 | WP_003381346.1 | Arc family DNA-binding protein | Antitoxin Detail |
| LCH33_RS29495 (LCH33_005872) | 9241..9660 | + | 420 | WP_017684243.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LCH33_RS29500 (LCH33_005873) | 9701..10310 | + | 610 | Protein_12 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LCH33_RS29505 (LCH33_005874) | 10609..11544 | + | 936 | WP_225231729.1 | AvrD family protein | - |
| LCH33_RS29510 (LCH33_005875) | 11885..12532 | + | 648 | WP_005746177.1 | histidine phosphatase family protein | - |
| LCH33_RS29515 (LCH33_005876) | 12771..13598 | + | 828 | WP_054987851.1 | TauD/TfdA family dioxygenase | - |
| LCH33_RS29520 (LCH33_005877) | 13616..14650 | + | 1035 | WP_054987854.1 | sulfotransferase | - |
| LCH33_RS29525 (LCH33_005878) | 14691..15893 | + | 1203 | WP_017684239.1 | aspartate aminotransferase family protein | - |
| LCH33_RS29530 (LCH33_005879) | 15930..16586 | + | 657 | WP_032609899.1 | 2OG-Fe(II) oxygenase family protein | - |
| LCH33_RS29535 (LCH33_005880) | 16586..17164 | + | 579 | WP_054987852.1 | AAA family ATPase | - |
| LCH33_RS29540 (LCH33_005881) | 17366..17602 | + | 237 | WP_017684237.1 | carbon storage regulator | - |
| LCH33_RS29545 (LCH33_005882) | 17671..18501 | - | 831 | Protein_21 | IS3 family transposase ISPsy24 | Transposase |
| LCH33_RS29550 (LCH33_005883) | 19211..19861 | + | 651 | WP_003344252.1 | ParA family protein | - |
| LCH33_RS29555 (LCH33_005884) | 19942..20232 | + | 291 | WP_003344250.1 | hypothetical protein | - |
| LCH33_RS29560 (LCH33_005885) | 20726..21427 | + | 702 | WP_054987658.1 | FadR/GntR family transcriptional regulator | - |
| LCH33_RS29565 (LCH33_005886) | 21503..22699 | + | 1197 | WP_225231730.1 | L-2-hydroxyglutarate oxidase | - |
| LCH33_RS29570 (LCH33_005887) | 22741..24087 | + | 1347 | WP_082441235.1 | MFS transporter | - |
| LCH33_RS29575 (LCH33_005888) | 24145..24330 | + | 186 | WP_054987661.1 | hypothetical protein | - |
| LCH33_RS29580 (LCH33_005889) | 24344..24700 | - | 357 | WP_054987667.1 | helix-turn-helix transcriptional regulator | - |
| LCH33_RS29585 (LCH33_005890) | 24946..25458 | + | 513 | WP_054987662.1 | transcription termination/antitermination NusG family protein | - |
| LCH33_RS29590 (LCH33_005891) | 25547..25789 | + | 243 | WP_225231731.1 | hypothetical protein | - |
| LCH33_RS29595 (LCH33_005892) | 25802..26509 | + | 708 | WP_225231732.1 | Type IV secretion system protein virB1 | VF |
| LCH33_RS29600 (LCH33_005893) | 26506..26844 | + | 339 | WP_225231733.1 | conjugal transfer protein | - |
| LCH33_RS29605 (LCH33_005894) | 26857..27345 | + | 489 | WP_058886708.1 | VirB3 family type IV secretion system protein | - |
| LCH33_RS29610 (LCH33_005895) | 27248..29746 | + | 2499 | WP_225231724.1 | conjugal transfer protein | - |
| LCH33_RS29615 (LCH33_005896) | 29743..30429 | + | 687 | WP_225231725.1 | P-type DNA transfer protein VirB5 | - |
| LCH33_RS29620 (LCH33_005897) | 30462..30815 | + | 354 | WP_053481558.1 | hypothetical protein | - |
| LCH33_RS29625 (LCH33_005898) | 30826..31758 | + | 933 | WP_122391519.1 | type IV secretion system protein | - |
| LCH33_RS29630 (LCH33_005899) | 32171..32959 | + | 789 | WP_225231726.1 | Type IV secretion system protein virB8 | VF |
| LCH33_RS29635 (LCH33_005900) | 32949..33758 | + | 810 | WP_225231727.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LCH33_RS29640 (LCH33_005901) | 33745..35103 | + | 1359 | WP_074910395.1 | Type IV secretion system protein virB10 | VF |
| LCH33_RS29645 (LCH33_005902) | 35113..36171 | + | 1059 | WP_074910398.1 | Type IV secretion system protein VirB11 | VF |
| LCH33_RS29650 (LCH33_005903) | 36181..36567 | + | 387 | WP_054984668.1 | hypothetical protein | - |
| LCH33_RS29655 (LCH33_005904) | 36552..36908 | + | 357 | WP_054984669.1 | hypothetical protein | - |
| LCH33_RS29660 (LCH33_005905) | 37184..37807 | + | 624 | WP_054984670.1 | glycoside hydrolase family 25 protein | - |
| LCH33_RS29665 (LCH33_005906) | 38143..40551 | + | 2409 | WP_074910401.1 | ATP-binding protein | - |
| LCH33_RS29670 (LCH33_005907) | 40673..40903 | + | 231 | WP_054986452.1 | hypothetical protein | - |
| LCH33_RS29675 (LCH33_005908) | 40903..41112 | + | 210 | WP_054986453.1 | hypothetical protein | VF |
| LCH33_RS29680 (LCH33_005909) | 41109..41342 | + | 234 | WP_054986454.1 | hypothetical protein | - |
| LCH33_RS29685 (LCH33_005910) | 41342..42994 | + | 1653 | WP_054986455.1 | Conjugal transfer protein TraG | VF |
| LCH33_RS29690 (LCH33_005911) | 43035..43397 | + | 363 | WP_054986456.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| LCH33_RS29695 (LCH33_005912) | 43425..45590 | + | 2166 | WP_074910404.1 | type IA DNA topoisomerase | - |
| LCH33_RS29700 (LCH33_005913) | 45617..45901 | + | 285 | WP_054987147.1 | hypothetical protein | - |
| LCH33_RS29705 (LCH33_005914) | 45928..46533 | + | 606 | WP_054987146.1 | single-stranded DNA-binding protein | - |
| LCH33_RS29710 (LCH33_005915) | 46574..46858 | + | 285 | WP_054987145.1 | hypothetical protein | - |
| LCH33_RS29715 (LCH33_005916) | 47159..47893 | + | 735 | WP_074910406.1 | StbB family protein | - |
| LCH33_RS29720 (LCH33_005917) | 47890..48462 | + | 573 | WP_074910409.1 | hypothetical protein | - |
| LCH33_RS29725 (LCH33_005918) | 48489..49028 | - | 540 | WP_074910411.1 | hypothetical protein | - |
| LCH33_RS29730 (LCH33_005919) | 49244..49591 | + | 348 | WP_054988011.1 | hypothetical protein | Relaxase |
| LCH33_RS29735 (LCH33_005920) | 50575..50994 | + | 420 | WP_054988013.1 | hypothetical protein | - |
| LCH33_RS29740 (LCH33_005921) | 51333..53375 | + | 2043 | WP_054988015.1 | hypothetical protein | - |
| LCH33_RS29745 (LCH33_005922) | 53501..53929 | + | 429 | WP_054988014.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|